Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

66275168 .. 66289228

Gene Structure 14061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG458000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTGTGCTTGTGGTCAAGAGGAAAAGAGGGAATTGGGTTACATACTCGATCTGAACCTTCAGCTAGCTTATTCGATCTGGGCAGGACTGGAGTCTTCCACCCGATCTCCGACTCTCACCCATCCGCCGCTTCTGAGCTCTTCACCCAGGGATCCTTCGACAGAATGGCCACCGATGGGAATGCTGTTGTACCATCGCCGAAAGCTCCAGCTGAACCAAACCCGGGAGCTCCTGAGGCTCCGCCTACGGCTCCAACATCTGCTTGTCCTCCTAGACCATCAATAAGGAAGAGAAAGCGGGCTGAAAAGAAGGCAGTGAAGCCACTGAAGGTCACAGCCAGTATTAATTTAATGTTTTTGAATGAAATGGCAGACTATGCGAAGGAGAAGGCTGCTGAACAAACAGCAAAAAAGGCTGCTTGTAGGGCTAAGAAATCGAAGATGGCTGCTGGGACAAGTGTGGAAGCCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.63

Weight (kDa)

9.71

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	126, 129, 242, 298
AclWI	GGATC	2 cut(s)	147, 160
AcoI	YGGCCR	1 cut(s)	168
AcuI	CTGAAG	2 cut(s)	45, 347
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	177, 224
AgsI	TTSAA	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	6 cut(s)	65, 69, 139, 206, 212, 230
AluI	AGCT	6 cut(s)	65, 69, 139, 206, 212, 230
Alw21I	GWGCWC	2 cut(s)	141, 232
AlwI	GGATC	2 cut(s)	147, 160
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	392, 416, 446
AseI	ATTAAT	1 cut(s)	345
AsuC2I	CCSGG	2 cut(s)	224, 225
AsuHPI	GGTGA	2 cut(s)	110, 136
AsuNHI	GCTAGC	1 cut(s)	65
AvaI	CYCGRG	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	234
BalI	TGGCCA	1 cut(s)	170
BamHI	GGATCC	1 cut(s)	152
BanII	GRGCYC	2 cut(s)	141, 232
BbsI	GAAGAC	1 cut(s)	88
Bbv12I	GWGCWC	2 cut(s)	141, 232
BbvI	GCAGC	3 cut(s)	379, 403, 433
BccI	CCATC	5 cut(s)	130, 170, 202, 286, 436
BceAI	ACGGC	1 cut(s)	264
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BciT130I	CCWGG	1 cut(s)	149
BcnI	CCSGG	2 cut(s)	224, 225
BfaI	CTAG	2 cut(s)	66, 273
BisI	GCNGC	4 cut(s)	129, 393, 417, 447
BlsI	GCNGC	4 cut(s)	130, 394, 418, 448
Bme1390I	CCNGG	3 cut(s)	149, 224, 225
BmeT110I	CYCGRG	1 cut(s)	223
BmiI	GGNNCC	3 cut(s)	154, 240, 252
BmrFI	CCNGG	3 cut(s)	149, 224, 225
BmtI	GCTAGC	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	2 cut(s)	111, 192
BpuMI	CCSGG	2 cut(s)	224, 225
BsaJI	CCNNGG	3 cut(s)	147, 148, 223
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 224
Bse1I	ACTGG	2 cut(s)	94, 339
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	3 cut(s)	147, 148, 223
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	177, 224
BseMII	CTCAG	2 cut(s)	126, 225
BseNI	ACTGG	2 cut(s)	94, 339
BseXI	GCAGC	3 cut(s)	379, 403, 433
BseYI	CCCAGC	1 cut(s)	449
BshFI	GGCC	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	141, 232
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	177, 224
BsmFI	GGGAC	1 cut(s)	466
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	141, 232
Bsp143I	GATC	4 cut(s)	50, 76, 105, 152
BspACI	CCGC	4 cut(s)	126, 129, 242, 298
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	2 cut(s)	127, 226
BspLI	GGNNCC	3 cut(s)	154, 240, 252
BspOI	GCTAGC	1 cut(s)	69
BspPI	GGATC	2 cut(s)	147, 160
BspQI	GCTCTTC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	94, 339
BssECI	CCNNGG	3 cut(s)	147, 148, 223
BssMI	GATC	4 cut(s)	50, 76, 105, 152
Bst2UI	CCWGG	1 cut(s)	149
Bst6I	CTCTTC	2 cut(s)	146, 284
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	67, 300
BstDEI	CTNAG	3 cut(s)	135, 234, 429
BstF5I	GGATG	1 cut(s)	122
BstKTI	GATC	4 cut(s)	53, 79, 108, 155
BstMBI	GATC	4 cut(s)	50, 76, 105, 152
BstMWI	GCNNNNNNNGC	4 cut(s)	236, 377, 413, 425
BstNI	CCWGG	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	92
BstSCI	CCNGG	3 cut(s)	147, 222, 223
BstV1I	GCAGC	3 cut(s)	379, 403, 433
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	152
BstYI	RGATCY	1 cut(s)	152
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	122
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 323
Cac8I	GCNNGC	2 cut(s)	67, 300
Cfr9I	CCCGGG	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	191
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	3 cut(s)	135, 234, 429
DpnI	GATC	4 cut(s)	52, 78, 107, 154
DpnII	GATC	4 cut(s)	50, 76, 105, 152
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	146, 284
EarI	CTCTTC	2 cut(s)	146, 284
EciI	GGCGGA	2 cut(s)	115, 231
Ecl136II	GAGCTC	2 cut(s)	139, 230
Eco24I	GRGCYC	2 cut(s)	141, 232
Eco53kI	GAGCTC	2 cut(s)	139, 230
Eco57I	CTGAAG	2 cut(s)	45, 347
Eco81I	CCTNAGG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	223
EcoICRI	GAGCTC	2 cut(s)	139, 230
EcoRII	CCWGG	1 cut(s)	147
EcoT38I	GRGCYC	2 cut(s)	141, 232
FaiI	YATR	2 cut(s)	45, 378
FaqI	GGGAC	1 cut(s)	466
FauI	CCCGC	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	129, 393, 417, 447
FokI	GGATG	1 cut(s)	109
FriOI	GRGCYC	2 cut(s)	141, 232
Fsp4HI	GCNGC	4 cut(s)	129, 393, 417, 447
FspBI	CTAG	2 cut(s)	66, 273
GluI	GCNGC	4 cut(s)	129, 393, 417, 447
GsaI	CCCAGC	1 cut(s)	453
GsuI	CTGGAG	2 cut(s)	111, 192
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	224
HinfI	GANTC	2 cut(s)	93, 113
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	2 cut(s)	110, 136
Hpy188I	TCNGA	3 cut(s)	55, 112, 136
Hpy188III	TCNNGA	2 cut(s)	18, 233
HpyAV	CCTTC	6 cut(s)	69, 166, 304, 322, 376, 382
HpyF10VI	GCNNNNNNNGC	4 cut(s)	236, 377, 413, 425
HpyF3I	CTNAG	3 cut(s)	135, 234, 429
Kzo9I	GATC	4 cut(s)	50, 76, 105, 152
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	5 cut(s)	211, 227, 235, 244, 256
Lsp1109I	GCAGC	3 cut(s)	379, 403, 433
MaeI	CTAG	2 cut(s)	66, 273
MaeIII	GTNAC	2 cut(s)	39, 331
MalI	GATC	4 cut(s)	52, 78, 107, 154
MboI	GATC	4 cut(s)	50, 76, 105, 152
MboII	GAAGA	4 cut(s)	88, 133, 301, 451
MflI	RGATCY	1 cut(s)	152
MhlI	GDGCHC	2 cut(s)	141, 232
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	3 cut(s)	33, 346, 469
MluNI	TGGCCA	1 cut(s)	170
MlyI	GAGTC	2 cut(s)	102, 107
MmeI	TCCRAC	2 cut(s)	135, 278
MnlI	CCTC	4 cut(s)	14, 22, 229, 279
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	3 cut(s)	345, 350, 472
Msp20I	TGGCCA	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	3 cut(s)	149, 224, 225
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	4 cut(s)	236, 377, 413, 425
NciI	CCSGG	2 cut(s)	224, 225
NdeII	GATC	4 cut(s)	50, 76, 105, 152
NheI	GCTAGC	1 cut(s)	65
NlaIV	GGNNCC	3 cut(s)	154, 240, 252
NmuCI	GTSAC	1 cut(s)	331
PasI	CCCWGGG	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	146
PctI	GAATGC	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	130, 394, 418, 448
PleI	GAGTC	2 cut(s)	101, 107
PpsI	GAGTC	2 cut(s)	101, 107
PshAI	GACNNNNGTC	1 cut(s)	92
PshBI	ATTAAT	1 cut(s)	345
Psp124BI	GAGCTC	2 cut(s)	141, 232
Psp6I	CCWGG	1 cut(s)	147
PspFI	CCCAGC	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	3 cut(s)	154, 240, 252
PsuI	RGATCY	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SacI	GAGCTC	2 cut(s)	141, 232
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	345, 350, 472
SatI	GCNGC	4 cut(s)	129, 393, 417, 447
Sau3AI	GATC	4 cut(s)	50, 76, 105, 152
SchI	GAGTC	2 cut(s)	102, 107
ScrFI	CCNGG	3 cut(s)	149, 224, 225
SduI	GDGCHC	2 cut(s)	141, 232
SetI	ASST	8 cut(s)	61, 67, 71, 141, 208, 214, 232, 333
SmaI	CCCGGG	1 cut(s)	225
Sse9I	AATT	3 cut(s)	33, 346, 469
SsiI	CCGC	4 cut(s)	126, 129, 242, 298
SspMI	CTAG	2 cut(s)	66, 273
SstI	GAGCTC	2 cut(s)	141, 232
StyD4I	CCNGG	3 cut(s)	147, 222, 223
TaqI	TCGA	4 cut(s)	49, 75, 159, 437
TasI	AATT	3 cut(s)	33, 346, 469
TauI	GCSGC	1 cut(s)	131
Tru1I	TTAA	3 cut(s)	345, 350, 472
Tru9I	TTAA	3 cut(s)	345, 350, 472
TscAI	CASTG	2 cut(s)	321, 330
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	392, 416, 446
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	378
TspMI	CCCGGG	1 cut(s)	223
TspRI	CASTG	2 cut(s)	321, 330
VspI	ATTAAT	1 cut(s)	345
XmaI	CCCGGG	1 cut(s)	223
XspI	CTAG	2 cut(s)	66, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.