Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001940

Physical Location & Seq

Genomic Coordinates Reverse (-)

80926415 .. 80929171

Gene Structure 2757 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG472000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCCACTGATGGGAATGCTATTATACCATCGTCGACACCGCTAGTAGAACCAAACCCGAGAGTGCCTGATGCTCTGATTGCACCTACAGCTCCGACAGCTGCTCGTCCTCCAAGACCACTAAGAAGCAAGAGGAAGAGGGCTGAGAAGAAGGCTGTCAAGCCACTGAAGATCACAACCAGGTCCAATGTCTGGGAACACTTTGAGAAGTTTGATAGGCCAATAGTGGAGGTTGTGGATGGAAAGAAGCAGGAAGTTGGACGTGAAGTAAGAGCAAAGTGCAGGGACAAGTGTGGAAGCCAATTAATGGATGGCTGCATTGCTGGTGAATTGCTGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.47

Weight (kDa)

9.67

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001940)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0054121 RchiOBHm_Chr5g0075631 RchiOBHm_Chr7g0218761
rosa_laevigata	RLG00000019954
rosa_multiflora	Rmu_co8337375.1_g000001 Rmu_sc0002724.1_g000041 Rmu_sc0003010.1_g000001 Rmu_ssc0000055.1_g000007
rosa_roxburghii	Rroxscaffold_2G00134930 Rroxscaffold_3G00245470
rosa_rugosa	Rorug02G0540100 Rorug04G0078000 Rorug07G0291900
rosa_samantha	Rh1AG017000 Rh1BG425200 Rh1CG073600 Rh1CG400600 Rh1DG047900 Rh1DG080500 Rh1DG458000 Rh2AG189900 Rh2DG158300 Rh2DG556600 Rh3AG195400 Rh3AG237500 Rh3BG189900 Rh3BG225600 Rh3BG288600 Rh3CG179800 Rh3CG220400 Rh3CG270300 Rh3DG221000 Rh4AG241700 Rh5AG065800 Rh5AG087600 Rh5AG472000 Rh5AG542700 Rh5BG423000 Rh5CG282600 Rh5DG082100 Rh6AG078100 Rh6BG094300 Rh6CG332600 Rh6DG209500 Rh7AG037100 Rh7DG465800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	192, 307
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	1 cut(s)	41
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	12, 192, 307
AjiI	CACGTC	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	2 cut(s)	92, 101
AluI	AGCT	2 cut(s)	92, 101
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	2 cut(s)	3, 218
ApeKI	GCWGC	2 cut(s)	101, 315
AseI	ATTAAT	1 cut(s)	305
AspS9I	GGNCC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	1 cut(s)	183
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	2 cut(s)	88, 302
BccI	CCATC	4 cut(s)	5, 37, 233, 305
BciT130I	CCWGG	1 cut(s)	181
BfaI	CTAG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	2 cut(s)	102, 316
BlsI	GCNGC	2 cut(s)	103, 317
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	183
BmeT110I	CYCGRG	1 cut(s)	58
BmgBI	CACGTC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	183
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 192, 307
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	181
BseGI	GGATG	2 cut(s)	244, 316
BseLI	CCNNNNNNNGG	3 cut(s)	12, 192, 307
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	88, 302
BsgI	GTGCAG	1 cut(s)	301
BshFI	GGCC	2 cut(s)	5, 220
BsiHKCI	CYCGRG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	3 cut(s)	12, 192, 307
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	22
BsnI	GGCC	2 cut(s)	5, 220
BsoBI	CYCGRG	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	171
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	2 cut(s)	5, 220
BspCNI	CTCAG	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	318
BssMI	GATC	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	1 cut(s)	131
BstDEI	CTNAG	2 cut(s)	122, 144
BstF5I	GGATG	2 cut(s)	244, 316
BstKTI	GATC	1 cut(s)	174
BstMBI	GATC	1 cut(s)	171
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 89, 98
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	2 cut(s)	88, 302
BsuRI	GGCC	2 cut(s)	5, 220
BtrI	CACGTC	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	244, 316
BtsIMutI	CAGTG	2 cut(s)	6, 164
Cfr13I	GGNCC	1 cut(s)	183
CsiI	ACCWGGT	1 cut(s)	179
CviJI	RGCY	9 cut(s)	5, 92, 101, 143, 155, 163, 220, 300, 315
CviKI_1	RGCY	9 cut(s)	5, 92, 101, 143, 155, 163, 220, 300, 315
DdeI	CTNAG	2 cut(s)	122, 144
DpnI	GATC	1 cut(s)	173
DpnII	GATC	1 cut(s)	171
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	183
Eco57I	CTGAAG	1 cut(s)	188
Eco88I	CYCGRG	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	179
FaiI	YATR	1 cut(s)	26
FaqI	GGGAC	1 cut(s)	299
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	2 cut(s)	102, 316
FokI	GGATG	2 cut(s)	251, 323
Fsp4HI	GCNGC	2 cut(s)	102, 316
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	2 cut(s)	102, 316
HaeIII	GGCC	2 cut(s)	5, 220
HincII	GTYRAC	1 cut(s)	36
HindII	GTYRAC	1 cut(s)	36
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	78, 96
Hpy8I	GTNNAC	1 cut(s)	36
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	3 cut(s)	83, 282, 318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 89, 98
HpyF3I	CTNAG	2 cut(s)	122, 144
HpySE526I	ACGT	1 cut(s)	262
Kzo9I	GATC	1 cut(s)	171
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	8 cut(s)	81, 166, 178, 193, 236, 268, 309, 320
Lsp1109I	GCAGC	2 cut(s)	88, 302
LweI	GCATC	1 cut(s)	61
MabI	ACCWGGT	1 cut(s)	179
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	262
MalI	GATC	1 cut(s)	173
MboI	GATC	1 cut(s)	171
MboII	GAAGA	3 cut(s)	148, 160, 181
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	302, 329
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	119, 238
MnlI	CCTC	4 cut(s)	120, 126, 132, 223
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	305
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	101
MspR9I	CCNGG	1 cut(s)	181
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	3 cut(s)	80, 89, 98
NdeII	GATC	1 cut(s)	171
PctI	GAATGC	1 cut(s)	22
PflMI	CCANNNNNTGG	2 cut(s)	192, 307
PkrI	GCNGC	2 cut(s)	103, 317
PshBI	ATTAAT	1 cut(s)	305
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	101
SalI	GTCGAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	305
SatI	GCNGC	2 cut(s)	102, 316
Sau3AI	GATC	1 cut(s)	171
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	6 cut(s)	88, 94, 103, 185, 234, 265
SexAI	ACCWGGT	1 cut(s)	179
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	87
SinI	GGWCC	1 cut(s)	183
Sse9I	AATT	2 cut(s)	302, 329
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	179
TaiI	ACGT	1 cut(s)	265
TaqI	TCGA	1 cut(s)	35
TasI	AATT	2 cut(s)	302, 329
Tru1I	TTAA	1 cut(s)	305
Tru9I	TTAA	1 cut(s)	305
TscAI	CASTG	2 cut(s)	13, 171
TseI	GCWGC	2 cut(s)	101, 315
TspRI	CASTG	2 cut(s)	13, 171
Van91I	CCANNNNNTGG	2 cut(s)	192, 307
VpaK11BI	GGWCC	1 cut(s)	183
VspI	ATTAAT	1 cut(s)	305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.