Rh5DG082100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
7197066 .. 7197350
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG082100.1

Sequence Viewer

Length: 285 bp
ATGGCCACTGATGATTCTAGGATGGGGAAAGAAATTGTGCCATCATCTGAAGGAGAAGGAAAAGAAGAAAAGAAGCCTTCAACATCACAGAAGATGAAGAGAAAGCGGGTAGAGAAGAAAAAAGTGAAGCCATTGAAGCCAAGTTCAAGGAGTTGGGTCTGGGAACACTTCGAAAAATTTGACAAGCCGATTTACAATACCGTTGATGGAAAGCAGGTAAAAGTTGGCCATGAAGTACGAGCTAAGTGTGTTTATTGCTTTACTGAACTTGCTGGGATTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.82

Weight (kDa)

9.52

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 205
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 2 cut(s) 3, 226
AcsI RAATTY 1 cut(s) 176
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 237
AgsI TTSAA 3 cut(s) 81, 136, 147
AluBI AGCT 1 cut(s) 242
AluI AGCT 1 cut(s) 242
AoxI GGCC 2 cut(s) 3, 226
ApoI RAATTY 1 cut(s) 176
AsuII TTCGAA 1 cut(s) 171
BalI TGGCCA 2 cut(s) 5, 228
BccI CCATC 3 cut(s) 16, 49, 200
BfaI CTAG 1 cut(s) 18
BfuAI ACCTGC 1 cut(s) 205
Bpu14I TTCGAA 1 cut(s) 171
BseGI GGATG 1 cut(s) 27
BseYI CCCAGC 1 cut(s) 272
BshFI GGCC 2 cut(s) 5, 228
BsnI GGCC 2 cut(s) 5, 228
Bsp119I TTCGAA 1 cut(s) 171
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 5, 228
BspMI ACCTGC 1 cut(s) 205
BspT104I TTCGAA 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 92
BstBI TTCGAA 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 27
BstMWI GCNNNNNNNGC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 5, 228
BtsCI GGATG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 6
BveI ACCTGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 236
CviAII CATG 1 cut(s) 230
CviJI RGCY 7 cut(s) 5, 76, 130, 139, 187, 228, 242
CviKI_1 RGCY 7 cut(s) 5, 76, 130, 139, 187, 228, 242
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 1 cut(s) 243
EaeI YGGCCR 2 cut(s) 3, 226
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 69
FaeI CATG 1 cut(s) 233
FaiI YATR 1 cut(s) 231
FatI CATG 1 cut(s) 229
FauI CCCGC 1 cut(s) 99
FokI GGATG 1 cut(s) 34
FspBI CTAG 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 276
HaeIII GGCC 2 cut(s) 5, 228
Hin1II CATG 1 cut(s) 233
HinfI GANTC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 44, 50, 87
HpyCH4III ACNGT 1 cut(s) 202
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 1 cut(s) 233
LpnPI CCDG 3 cut(s) 145, 200, 258
MaeI CTAG 1 cut(s) 18
MboII GAAGA 4 cut(s) 77, 103, 109, 127
MlsI TGGCCA 2 cut(s) 5, 228
MluCI AATT 2 cut(s) 33, 176
MluNI TGGCCA 2 cut(s) 5, 228
Mox20I TGGCCA 2 cut(s) 5, 228
MscI TGGCCA 2 cut(s) 5, 228
Msp20I TGGCCA 2 cut(s) 5, 228
MwoI GCNNNNNNNGC 1 cut(s) 136
NlaIII CATG 1 cut(s) 233
NspV TTCGAA 1 cut(s) 171
PfeI GAWTC 1 cut(s) 14
PspFI CCCAGC 1 cut(s) 272
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
SetI ASST 2 cut(s) 219, 244
SfuI TTCGAA 1 cut(s) 171
Sse9I AATT 2 cut(s) 33, 176
SsiI CCGC 1 cut(s) 106
SspMI CTAG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 202
TaqI TCGA 1 cut(s) 171
TasI AATT 2 cut(s) 33, 176
TfiI GAWTC 1 cut(s) 14
TscAI CASTG 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 110, 246
TspRI CASTG 1 cut(s) 13
XapI RAATTY 1 cut(s) 176
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.