Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Reverse (-)

27182283 .. 27184757

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028731

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGCAAGGAAGATTCGAGCTTGAGCATGAAGCACCAGACCTCTCACCCTTCTTCTCATCTTCTCCTTCCCCAAGCTCCACCTTCCCTGCCAAATCTCAGCTCTCCGACTCCGACGACGATGAGGAGGAAGACGAGTTCGAAGAGGACGACGATGAAGAAGTCGCGGCCGATGAGTACAATGACATTTCCGGCGATATGTTAGACGGGCTCGAACAAAGCGACGATGAAATTGAAATGGAGGACTCCATGGCCGGTGCAGAGCCGCCGGCGATTCTCAACCAGGAGTTCCGGTGGAAGAGAGTGGAGAAGCTCTGCGAAGATGTGAAACAGTTCGGCGAGGAAATGATTGACGACGGCGCTCTCGCCTCAATCTACGATTTCCGAATTGATAAATTTCAGAGATTAGCTATACAAGCATTCTTGAGAGGTTCATCAGTAGTTGTGACTGCGCCGACGAGTAGCGGAAAGACTTTGATAGCAGAAGCTACTGCTGTAGCAACCGTAGCCAAGGGAAGAAGATTGTTCTACACAACTCTGCTTAAGGCCTTATTGAATCAGAAGTTTCGCGAATTTCGTGAAACTTTCGGTGAAAATAATGTTGGTCTTCTCACGGGAGATTCGGCAGTAAACGAAGATGCTCAGGTTTTTATTATGACCACAGAGATTTTGCGCAACATGTTGTATCAGAGAGTTGTTACTGTGGAAAAACTCAATTGGAAACTGATTAAGTGGTGGATCCCTGTTAATGTAATCTTCATCGACATATGCTTGTATCAGGCATGTATAGATCCTGATTTCCTATTTATGAAGACATCGCATCATGAAGAGTATCTCTGTGTCAAGGTAAGGGCTTTTTGGTTCAGAAATACCAATGGAATGAAGGCCAATGGAATGAAGGCTTTAAATAACAAACAGCTAATGTCCAAGTGGGCTGATGAAATGTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

317

Amino Acids

36.04

Weight (kDa)

4.44

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	131 - 237	2.8e-13	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	671
AccII	CGCG	2 cut(s)	164, 567
AciI	CCGC	3 cut(s)	164, 263, 462
AclWI	GGATC	3 cut(s)	730, 743, 782
AcoI	YGGCCR	2 cut(s)	165, 249
AcsI	RAATTY	2 cut(s)	392, 569
AfaI	GTAC	1 cut(s)	176
AflII	CTTAAG	1 cut(s)	539
AflIII	ACRYGT	1 cut(s)	675
AgsI	TTSAA	2 cut(s)	233, 553
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	582, 614
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	8 cut(s)	19, 75, 100, 310, 407, 485, 916, 948
AluI	AGCT	8 cut(s)	19, 75, 100, 310, 407, 485, 916, 948
AlwI	GGATC	3 cut(s)	730, 743, 782
AoxI	GGCC	4 cut(s)	165, 249, 543, 882
ApoI	RAATTY	2 cut(s)	392, 569
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	3 cut(s)	359, 451, 672
AsuHPI	GGTGA	2 cut(s)	36, 599
AsuII	TTCGAA	1 cut(s)	138
BamHI	GGATCC	1 cut(s)	735
BanII	GRGCYC	1 cut(s)	210
BbsI	GAAGAC	3 cut(s)	135, 596, 815
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	281
BfaI	CTAG	2 cut(s)	945, 949
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	360
BfrI	CTTAAG	1 cut(s)	539
BisI	GCNGC	2 cut(s)	165, 263
BlsI	GCNGC	2 cut(s)	166, 264
Bme1390I	CCNGG	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	625, 826
BpiI	GAAGAC	3 cut(s)	135, 596, 815
Bpu10I	CCTNAGC	1 cut(s)	639
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	2 cut(s)	41, 442
BsaJI	CCNNGG	2 cut(s)	246, 507
BsaWI	WCCGGW	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bse118I	RCCGGY	2 cut(s)	251, 265
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	246, 507
BseMII	CTCAG	2 cut(s)	110, 653
BseRI	GAGGAG	1 cut(s)	137
BseX3I	CGGCCG	1 cut(s)	165
BsgI	GTGCAG	1 cut(s)	276
Bsh1236I	CGCG	2 cut(s)	164, 567
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	4 cut(s)	167, 251, 545, 884
BsiEI	CGRYCG	1 cut(s)	168
BsiSI	CCGG	4 cut(s)	189, 252, 266, 289
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	4 cut(s)	167, 251, 545, 884
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	210
Bsp143I	GATC	2 cut(s)	735, 787
Bsp19I	CCATGG	1 cut(s)	246
Bsp68I	TCGCGA	1 cut(s)	567
BspACI	CCGC	3 cut(s)	164, 263, 462
BspANI	GGCC	4 cut(s)	167, 251, 545, 884
BspCNI	CTCAG	2 cut(s)	109, 652
BspFNI	CGCG	2 cut(s)	164, 567
BspHI	TCATGA	1 cut(s)	820
BspLI	GGNNCC	1 cut(s)	737
BspPI	GGATC	3 cut(s)	730, 743, 782
BspT104I	TTCGAA	1 cut(s)	138
BspTI	CTTAAG	1 cut(s)	539
BsrFI	RCCGGY	2 cut(s)	251, 265
BssAI	RCCGGY	2 cut(s)	251, 265
BssECI	CCNNGG	2 cut(s)	246, 507
BssMI	GATC	2 cut(s)	735, 787
BssT1I	CCWWGG	2 cut(s)	246, 507
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	3 cut(s)	330, 502, 700
Bst6I	CTCTTC	3 cut(s)	135, 290, 819
BstAFI	CTTAAG	1 cut(s)	539
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	2 cut(s)	96, 639
BstDSI	CCRYGG	1 cut(s)	246
BstFNI	CGCG	2 cut(s)	164, 567
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	3 cut(s)	359, 451, 672
BstKTI	GATC	2 cut(s)	738, 790
BstMBI	GATC	2 cut(s)	735, 787
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	413, 503
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	679, 783
BstSCI	CCNGG	1 cut(s)	279
BstSFI	CTRYAG	1 cut(s)	492
BstUI	CGCG	2 cut(s)	164, 567
BstV2I	GAAGAC	3 cut(s)	135, 596, 815
BstX2I	RGATCY	2 cut(s)	735, 787
BstYI	RGATCY	2 cut(s)	735, 787
BstZI	CGGCCG	1 cut(s)	165
BsuRI	GGCC	4 cut(s)	167, 251, 545, 884
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	798
BtuMI	TCGCGA	1 cut(s)	567
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	820
CfoI	GCGC	3 cut(s)	359, 451, 672
Cfr10I	RCCGGY	2 cut(s)	251, 265
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	5 cut(s)	26, 247, 676, 780, 821
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	96, 639
DpnI	GATC	2 cut(s)	737, 789
DpnII	GATC	2 cut(s)	735, 787
DraI	TTTAAA	1 cut(s)	903
EaeI	YGGCCR	2 cut(s)	165, 249
EagI	CGGCCG	1 cut(s)	165
Eam1104I	CTCTTC	3 cut(s)	135, 290, 819
EarI	CTCTTC	3 cut(s)	135, 290, 819
EclXI	CGGCCG	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	246, 507
Eco147I	AGGCCT	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	210
Eco52I	CGGCCG	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	246, 507
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	2 cut(s)	246, 507
FaeI	CATG	5 cut(s)	29, 250, 679, 783, 824
FatI	CATG	5 cut(s)	25, 246, 675, 779, 820
FauNDI	CATATG	1 cut(s)	764
Fnu4HI	GCNGC	2 cut(s)	165, 263
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	2 cut(s)	165, 263
FspBI	CTAG	2 cut(s)	945, 949
FspI	TGCGCA	1 cut(s)	671
GlaI	GCGC	3 cut(s)	358, 450, 671
GluI	GCNGC	2 cut(s)	165, 263
HaeII	RGCGCY	1 cut(s)	360
HaeIII	GGCC	4 cut(s)	167, 251, 545, 884
HapII	CCGG	4 cut(s)	189, 252, 266, 289
HhaI	GCGC	3 cut(s)	359, 451, 672
Hin1II	CATG	5 cut(s)	29, 250, 679, 783, 824
Hin6I	GCGC	3 cut(s)	357, 449, 670
HinP1I	GCGC	3 cut(s)	357, 449, 670
HinfI	GANTC	6 cut(s)	12, 107, 242, 271, 553, 617
HpaII	CCGG	4 cut(s)	189, 252, 266, 289
HphI	GGTGA	2 cut(s)	36, 599
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	7 cut(s)	106, 112, 383, 399, 558, 687, 863
Hpy188III	TCNNGA	5 cut(s)	421, 566, 575, 791, 821
Hpy8I	GTNNAC	1 cut(s)	628
Hpy99I	CGWCG	6 cut(s)	116, 119, 152, 224, 356, 457
HpyAV	CCTTC	5 cut(s)	58, 75, 91, 874, 889
HpyCH4III	ACNGT	3 cut(s)	330, 502, 700
HpyCH4V	TGCA	2 cut(s)	4, 257
HpyF10VI	GCNNNNNNNGC	2 cut(s)	413, 503
HpyF3I	CTNAG	2 cut(s)	96, 639
Hsp92II	CATG	5 cut(s)	29, 250, 679, 783, 824
HspAI	GCGC	3 cut(s)	357, 449, 670
KroI	GCCGGC	1 cut(s)	265
KroNI	GCCGGC	1 cut(s)	267
Kzo9I	GATC	2 cut(s)	735, 787
LmnI	GCTCC	1 cut(s)	80
LweI	GCATC	2 cut(s)	625, 826
MaeI	CTAG	2 cut(s)	945, 949
MaeIII	GTNAC	2 cut(s)	442, 694
MalI	GATC	2 cut(s)	737, 789
MboI	GATC	2 cut(s)	735, 787
MfeI	CAATTG	1 cut(s)	712
MflI	RGATCY	2 cut(s)	735, 787
MhlI	GDGCHC	1 cut(s)	210
MluCI	AATT	5 cut(s)	228, 384, 392, 569, 712
MlyI	GAGTC	2 cut(s)	101, 236
MmeI	TCCRAC	2 cut(s)	129, 135
MnlI	CCTC	8 cut(s)	50, 115, 118, 136, 232, 331, 376, 419
MreI	CGCCGGCG	1 cut(s)	265
MroNI	GCCGGC	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	329
MseI	TTAA	4 cut(s)	540, 726, 744, 902
MspCI	CTTAAG	1 cut(s)	539
MspI	CCGG	4 cut(s)	189, 252, 266, 289
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	712
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	2 cut(s)	164, 567
MwoI	GCNNNNNNNGC	2 cut(s)	413, 503
NaeI	GCCGGC	1 cut(s)	267
NcoI	CCATGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	764
NdeII	GATC	2 cut(s)	735, 787
NgoMIV	GCCGGC	1 cut(s)	265
NlaIII	CATG	5 cut(s)	29, 250, 679, 783, 824
NlaIV	GGNNCC	1 cut(s)	737
NmuCI	GTSAC	1 cut(s)	442
NruI	TCGCGA	1 cut(s)	567
NsbI	TGCGCA	1 cut(s)	671
NspI	RCATGY	2 cut(s)	679, 783
NspV	TTCGAA	1 cut(s)	138
PagI	TCATGA	1 cut(s)	820
PceI	AGGCCT	1 cut(s)	545
PciI	ACATGT	1 cut(s)	675
PcsI	WCGNNNNNNNCGW	3 cut(s)	144, 216, 571
PctI	GAATGC	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	267
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	4 cut(s)	12, 271, 553, 617
PkrI	GCNGC	2 cut(s)	166, 264
PleI	GAGTC	2 cut(s)	101, 236
PpsI	GAGTC	2 cut(s)	101, 236
PscI	ACATGT	1 cut(s)	675
Psp6I	CCWGG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	737
PsuI	RGATCY	2 cut(s)	735, 787
RruI	TCGCGA	1 cut(s)	567
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SaqAI	TTAA	4 cut(s)	540, 726, 744, 902
SatI	GCNGC	2 cut(s)	165, 263
Sau3AI	GATC	2 cut(s)	735, 787
SchI	GAGTC	2 cut(s)	101, 236
ScrFI	CCNGG	1 cut(s)	281
SduI	GDGCHC	1 cut(s)	210
SfaNI	GCATC	2 cut(s)	625, 826
SfcI	CTRYAG	1 cut(s)	492
SfuI	TTCGAA	1 cut(s)	138
SgrAI	CRCCGGYG	1 cut(s)	265
SmlI	CTYRAG	3 cut(s)	20, 421, 539
SmoI	CTYRAG	3 cut(s)	20, 421, 539
Sse9I	AATT	5 cut(s)	228, 384, 392, 569, 712
SseBI	AGGCCT	1 cut(s)	545
SsiI	CCGC	3 cut(s)	164, 263, 462
SspMI	CTAG	2 cut(s)	945, 949
StuI	AGGCCT	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	2 cut(s)	246, 507
TaaI	ACNGT	3 cut(s)	330, 502, 700
TaqI	TCGA	4 cut(s)	15, 138, 210, 759
TasI	AATT	5 cut(s)	228, 384, 392, 569, 712
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	2 cut(s)	167, 265
TfiI	GAWTC	4 cut(s)	12, 271, 553, 617
Tru1I	TTAA	4 cut(s)	540, 726, 744, 902
Tru9I	TTAA	4 cut(s)	540, 726, 744, 902
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
Vha464I	CTTAAG	1 cut(s)	539
XapI	RAATTY	2 cut(s)	392, 569
XceI	RCATGY	2 cut(s)	679, 783
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	2 cut(s)	945, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.