Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8257291.1

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Forward (+)

37 .. 711

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8257291.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atggacacattctctatcctctcctcctcaccctctcacaccttcttcacgcgcctcctctctctcaaaccctcacctcctcatcccttacttcaccacctcacccaaaccctagccttctcttcccccaaatttcgacacactcaaaatctactccgattccgagtcactgtccagtccccaagctccgccttccccgccaaatctcaactctccgacgccgacgacgatgaggaggaagacgagttcgaagaggacgacgacgaagacgtcgcggccgatgagtacgatgacatttccggcgatatgtcggacgggctcgaacaaagcgacgatgaaattgagatggaggactccatggccggtgcagagccgccggcgattcgcgacgaggagttccggtggaagagagtggagaagctctgcgaagatgtgaaacagttcggcgaggaaatgattgacgacggcgctctcgcctcaatctacgatttccgaatcgataaatttcaggtgtgctttgatttgtactacacacattttccgattttatgtatcaaaatggtgtatcatgtaccggttttgagttacgaatctattggttacttttggatagagattagctatacaagcattcttgagaggttcatcagtagttgtgtctgcgccgacgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

224

Amino Acids

25.78

Weight (kDa)

4.24

Isoelectric Point (pI)

66.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AatII	GACGTC	1 cut(s)	273
AccII	CGCG	3 cut(s)	52, 275, 387
AciI	CCGC	4 cut(s)	189, 198, 275, 374
AcoI	YGGCCR	2 cut(s)	276, 360
AcsI	RAATTY	2 cut(s)	131, 503
AcyI	GRCGYC	2 cut(s)	219, 270
AfaI	GTAC	3 cut(s)	287, 527, 573
AgeI	ACCGGT	1 cut(s)	574
AloI	GAACNNNNNNTCC	2 cut(s)	230, 262
AluBI	AGCT	3 cut(s)	186, 421, 621
AluI	AGCT	3 cut(s)	186, 421, 621
AoxI	GGCC	2 cut(s)	276, 360
ApoI	RAATTY	2 cut(s)	131, 503
AsiGI	ACCGGT	1 cut(s)	574
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	3 cut(s)	54, 470, 665
AsuHPI	GGTGA	4 cut(s)	21, 66, 86, 94
AsuII	TTCGAA	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	2 cut(s)	246, 273
BccI	CCATC	1 cut(s)	340
BceAI	ACGGC	1 cut(s)	481
BfaI	CTAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	471
BisI	GCNGC	2 cut(s)	276, 374
BlsI	GCNGC	2 cut(s)	277, 375
BpiI	GAAGAC	2 cut(s)	246, 273
Bpu14I	TTCGAA	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	656
Bsa29I	ATCGAT	1 cut(s)	498
BsaHI	GRCGYC	2 cut(s)	219, 270
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	2 cut(s)	399, 574
BsaXI	ACNNNNNCTCC	2 cut(s)	386, 416
Bse118I	RCCGGY	3 cut(s)	362, 376, 574
Bse1I	ACTGG	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	175
BseRI	GAGGAG	6 cut(s)	13, 16, 47, 69, 248, 407
BseX3I	CGGCCG	1 cut(s)	276
BsgI	GTGCAG	1 cut(s)	387
Bsh1236I	CGCG	3 cut(s)	52, 275, 387
Bsh1285I	CGRYCG	1 cut(s)	279
BshFI	GGCC	2 cut(s)	278, 362
BshTI	ACCGGT	1 cut(s)	574
BshVI	ATCGAT	1 cut(s)	498
BsiEI	CGRYCG	1 cut(s)	279
BsiSI	CCGG	5 cut(s)	300, 363, 377, 400, 575
BslFI	GGGAC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	278, 362
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	357
Bsp68I	TCGCGA	1 cut(s)	387
BspACI	CCGC	4 cut(s)	189, 198, 275, 374
BspANI	GGCC	2 cut(s)	278, 362
BspDI	ATCGAT	1 cut(s)	498
BspFNI	CGCG	3 cut(s)	52, 275, 387
BspT104I	TTCGAA	1 cut(s)	249
BsrFI	RCCGGY	3 cut(s)	362, 376, 574
BsrI	ACTGG	1 cut(s)	175
BssAI	RCCGGY	3 cut(s)	362, 376, 574
BssECI	CCNNGG	1 cut(s)	357
BssNI	GRCGYC	2 cut(s)	219, 270
BssT1I	CCWWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	172, 441
Bst6I	CTCTTC	3 cut(s)	127, 246, 401
BstACI	GRCGYC	2 cut(s)	219, 270
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	378
BstDSI	CCRYGG	1 cut(s)	357
BstF5I	GGATG	1 cut(s)	82
BstFNI	CGCG	3 cut(s)	52, 275, 387
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	3 cut(s)	54, 470, 665
BstMCI	CGRYCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 627
BstUI	CGCG	3 cut(s)	52, 275, 387
BstV2I	GAAGAC	2 cut(s)	246, 273
BstZI	CGGCCG	1 cut(s)	276
Bsu15I	ATCGAT	1 cut(s)	498
BsuRI	GGCC	2 cut(s)	278, 362
BsuTUI	ATCGAT	1 cut(s)	498
BtgI	CCRYGG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	168
BtuMI	TCGCGA	1 cut(s)	387
Cac8I	GCNNGC	1 cut(s)	378
CfoI	GCGC	3 cut(s)	54, 470, 665
Cfr10I	RCCGGY	3 cut(s)	362, 376, 574
ClaI	ATCGAT	1 cut(s)	498
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	3 cut(s)	286, 526, 572
CspAI	ACCGGT	1 cut(s)	574
CviAII	CATG	2 cut(s)	358, 569
CviJI	RGCY	8 cut(s)	116, 186, 278, 319, 362, 373, 421, 621
CviKI_1	RGCY	8 cut(s)	116, 186, 278, 319, 362, 373, 421, 621
CviQI	GTAC	3 cut(s)	286, 526, 572
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	2 cut(s)	276, 360
EagI	CGGCCG	1 cut(s)	276
Eam1104I	CTCTTC	3 cut(s)	127, 246, 401
EarI	CTCTTC	3 cut(s)	127, 246, 401
EciI	GGCGGA	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	276
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	361, 572
FaiI	YATR	5 cut(s)	308, 359, 550, 570, 624
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	2 cut(s)	357, 568
FauI	CCCGC	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	276, 374
FokI	GGATG	1 cut(s)	69
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	2 cut(s)	276, 374
FspBI	CTAG	1 cut(s)	113
GlaI	GCGC	3 cut(s)	53, 469, 664
GluI	GCNGC	2 cut(s)	276, 374
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	278, 362
HapII	CCGG	5 cut(s)	300, 363, 377, 400, 575
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	3 cut(s)	54, 470, 665
Hin1I	GRCGYC	2 cut(s)	219, 270
Hin1II	CATG	2 cut(s)	361, 572
Hin6I	GCGC	3 cut(s)	52, 468, 663
HinP1I	GCGC	3 cut(s)	52, 468, 663
HinfI	GANTC	6 cut(s)	159, 165, 353, 382, 495, 590
HpaII	CCGG	5 cut(s)	300, 363, 377, 400, 575
HphI	GGTGA	4 cut(s)	21, 66, 86, 94
Hpy188I	TCNGA	6 cut(s)	158, 164, 217, 313, 494, 543
Hpy188III	TCNNGA	2 cut(s)	386, 635
HpyAV	CCTTC	3 cut(s)	52, 127, 202
HpyCH4III	ACNGT	2 cut(s)	172, 441
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	1 cut(s)	368
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 627
HpySE526I	ACGT	1 cut(s)	270
Hsp92I	GRCGYC	2 cut(s)	219, 270
Hsp92II	CATG	2 cut(s)	361, 572
HspAI	GCGC	3 cut(s)	52, 468, 663
KroI	GCCGGC	1 cut(s)	376
KroNI	GCCGGC	1 cut(s)	378
LmnI	GCTCC	1 cut(s)	191
LpnPI	CCDG	7 cut(s)	188, 313, 376, 390, 413, 494, 588
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	166, 584, 599
MboII	GAAGA	7 cut(s)	37, 114, 251, 263, 278, 418, 440
MhlI	GDGCHC	1 cut(s)	321
MluCI	AATT	3 cut(s)	131, 339, 503
MlyI	GAGTC	2 cut(s)	174, 347
MmeI	TCCRAC	2 cut(s)	240, 291
MreI	CGCCGGCG	1 cut(s)	376
MroNI	GCCGGC	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	440
MspI	CCGG	5 cut(s)	300, 363, 377, 400, 575
Mva1269I	GAATGC	1 cut(s)	630
MvnI	CGCG	3 cut(s)	52, 275, 387
MwoI	GCNNNNNNNGC	2 cut(s)	197, 627
NaeI	GCCGGC	1 cut(s)	378
NcoI	CCATGG	1 cut(s)	357
NgoMIV	GCCGGC	1 cut(s)	376
NlaIII	CATG	2 cut(s)	361, 572
NmuCI	GTSAC	1 cut(s)	166
NruI	TCGCGA	1 cut(s)	387
NspV	TTCGAA	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	5 cut(s)	225, 255, 267, 276, 327
PctI	GAATGC	1 cut(s)	630
PdiI	GCCGGC	1 cut(s)	378
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	4 cut(s)	159, 382, 495, 590
PinAI	ACCGGT	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	277, 375
PleI	GAGTC	2 cut(s)	173, 347
PpsI	GAGTC	2 cut(s)	173, 347
RruI	TCGCGA	1 cut(s)	387
RsaI	GTAC	3 cut(s)	287, 527, 573
RsaNI	GTAC	3 cut(s)	286, 526, 572
SatI	GCNGC	2 cut(s)	276, 374
SchI	GAGTC	2 cut(s)	174, 347
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	9 cut(s)	44, 79, 102, 188, 273, 423, 513, 623, 644
SfuI	TTCGAA	1 cut(s)	249
SgrAI	CRCCGGYG	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
Sse9I	AATT	3 cut(s)	131, 339, 503
SsiI	CCGC	4 cut(s)	189, 198, 275, 374
SspMI	CTAG	1 cut(s)	113
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	2 cut(s)	172, 441
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	4 cut(s)	136, 249, 321, 498
TasI	AATT	3 cut(s)	131, 339, 503
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	2 cut(s)	278, 376
TfiI	GAWTC	4 cut(s)	159, 382, 495, 590
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	166
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	351, 634
TspRI	CASTG	1 cut(s)	175
XapI	RAATTY	2 cut(s)	131, 503
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	1 cut(s)	113
ZraI	GACGTC	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.