Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002960.1

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Forward (+)

6741 .. 11321

Gene Structure 4581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002960.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atgagtccttgctccgatttttttgggaagtggcactttgccttctcttcccccaaatttccacacactcaaaatctactacgattccgagtcactgtccagtccccaagctcctccttccccgccaaatctcagctctccgactccaacgacgatggggaggaagacgagttcgaagaggatgacgacgaagacgtcgcgaccgatgagtacgatgacatttccggcgatatgttagacgggctcgaacaaagcgacgatgaaattgaaatggaggactccatggccggtgcagagccaccggcgattcgcaacgaggagttcaggtggaagagagtggagaagctctgcgaagatgtgaaacagttcggcgaggaaatgattgacgacgccaagggaagaagattgttctacacaactccgcttaaggccttattgaatcagaagtttcgcgaattttggttttgcaactgttttgtttgtattcctgatgccaatggttttaacagttttaaggagttagctggaaatcagcctctctcagaattgagaactgctgaagaagctgctgctgctgcagcagcagcaagtgccacttcagaggatggtgtacaagcaaacgggatgaaggaaacgaggggaagaagaagggatgatttgtatctggataatgaaatgaccgaaatacccatctttgccttagagatggggcccacaggagctgacatggcatgcgatgtcagcaagttaatagctacagttgacggaggaatgacggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

260

Amino Acids

29.07

Weight (kDa)

4.23

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	194
AatII	GACGTC	1 cut(s)	198
AccII	CGCG	2 cut(s)	200, 453
AciI	CCGC	2 cut(s)	123, 422
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	56, 455
AcuI	CTGAAG	2 cut(s)	579, 582
AcyI	GRCGYC	2 cut(s)	195, 390
AfaI	GTAC	2 cut(s)	212, 612
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	269, 439
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	7 cut(s)	111, 136, 346, 524, 566, 722, 755
AluI	AGCT	7 cut(s)	111, 136, 346, 524, 566, 722, 755
AlwNI	CAGNNNCTG	1 cut(s)	722
AoxI	GGCC	3 cut(s)	285, 429, 710
ApaI	GGGCCC	1 cut(s)	714
ApeKI	GCWGC	7 cut(s)	566, 569, 572, 575, 578, 581, 584
ApoI	RAATTY	2 cut(s)	56, 455
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	2 cut(s)	710, 711
AsuII	TTCGAA	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	714
BanII	GRGCYC	2 cut(s)	246, 714
BbsI	GAAGAC	2 cut(s)	171, 198
BbvI	GCAGC	7 cut(s)	553, 556, 559, 562, 590, 593, 596
BccI	CCATC	4 cut(s)	149, 599, 698, 700
BfmI	CTRYAG	2 cut(s)	576, 756
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	7 cut(s)	567, 570, 573, 576, 579, 582, 585
BlsI	GCNGC	7 cut(s)	568, 571, 574, 577, 580, 583, 586
BmgT120I	GGNCC	2 cut(s)	710, 711
BmiI	GGNNCC	2 cut(s)	711, 712
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	2 cut(s)	171, 198
Bpu14I	TTCGAA	1 cut(s)	174
BsaBI	GATNNNNATC	1 cut(s)	660
BsaHI	GRCGYC	2 cut(s)	195, 390
BsaJI	CCNNGG	2 cut(s)	282, 393
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bse118I	RCCGGY	2 cut(s)	287, 301
Bse1I	ACTGG	1 cut(s)	100
Bse8I	GATNNNNATC	1 cut(s)	660
BseDI	CCNNGG	2 cut(s)	282, 393
BseGI	GGATG	4 cut(s)	187, 610, 630, 658
BseJI	GATNNNNATC	1 cut(s)	660
BseMII	CTCAG	2 cut(s)	146, 555
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	103, 332
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	7 cut(s)	553, 556, 559, 562, 590, 593, 596
BsgI	GTGCAG	1 cut(s)	312
Bsh1236I	CGCG	2 cut(s)	200, 453
Bsh1285I	CGRYCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	287, 431, 712
BsiEI	CGRYCG	1 cut(s)	204
BsiSI	CCGG	3 cut(s)	225, 288, 302
BslFI	GGGAC	1 cut(s)	88
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	287, 431, 712
Bsp119I	TTCGAA	1 cut(s)	174
Bsp120I	GGGCCC	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	246, 714
Bsp1407I	TGTACA	1 cut(s)	610
Bsp19I	CCATGG	1 cut(s)	282
Bsp68I	TCGCGA	2 cut(s)	200, 453
BspACI	CCGC	2 cut(s)	123, 422
BspANI	GGCC	3 cut(s)	287, 431, 712
BspCNI	CTCAG	2 cut(s)	145, 554
BspFNI	CGCG	2 cut(s)	200, 453
BspLI	GGNNCC	2 cut(s)	711, 712
BspMAI	CTGCAG	1 cut(s)	580
BspT104I	TTCGAA	1 cut(s)	174
BspTI	CTTAAG	1 cut(s)	425
BsrFI	RCCGGY	2 cut(s)	287, 301
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	1 cut(s)	100
BssAI	RCCGGY	2 cut(s)	287, 301
BssECI	CCNNGG	2 cut(s)	282, 393
BssNI	GRCGYC	2 cut(s)	195, 390
BssT1I	CCWWGG	2 cut(s)	282, 393
Bst4CI	ACNGT	5 cut(s)	97, 366, 473, 509, 760
Bst6I	CTCTTC	3 cut(s)	52, 171, 326
BstACI	GRCGYC	2 cut(s)	195, 390
BstAFI	CTTAAG	1 cut(s)	425
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstAUI	TGTACA	1 cut(s)	610
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	3 cut(s)	132, 541, 700
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	4 cut(s)	187, 610, 630, 658
BstFNI	CGCG	2 cut(s)	200, 453
BstMCI	CGRYCG	1 cut(s)	204
BstMWI	GCNNNNNNNGC	9 cut(s)	563, 572, 575, 578, 581, 584, 590, 728, 741
BstNSI	RCATGY	1 cut(s)	735
BstSFI	CTRYAG	2 cut(s)	576, 756
BstSLI	GKGCMC	1 cut(s)	714
BstUI	CGCG	2 cut(s)	200, 453
BstV1I	GCAGC	7 cut(s)	553, 556, 559, 562, 590, 593, 596
BstV2I	GAAGAC	2 cut(s)	171, 198
BsuRI	GGCC	3 cut(s)	287, 431, 712
BtgI	CCRYGG	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	750
BtsCI	GGATG	4 cut(s)	187, 610, 630, 658
BtsIMutI	CAGTG	1 cut(s)	93
BtuMI	TCGCGA	2 cut(s)	200, 453
Cac8I	GCNNGC	1 cut(s)	733
CaiI	CAGNNNCTG	1 cut(s)	722
Cfr10I	RCCGGY	2 cut(s)	287, 301
Cfr13I	GGNCC	2 cut(s)	710, 711
CseI	GACGC	1 cut(s)	398
Csp6I	GTAC	2 cut(s)	211, 611
CviAII	CATG	3 cut(s)	283, 727, 732
CviQI	GTAC	2 cut(s)	211, 611
DdeI	CTNAG	3 cut(s)	132, 541, 700
DrdI	GACNNNNNNGTC	1 cut(s)	194
DseDI	GACNNNNNNGTC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	3 cut(s)	52, 171, 326
EarI	CTCTTC	3 cut(s)	52, 171, 326
Eco130I	CCWWGG	2 cut(s)	282, 393
Eco147I	AGGCCT	1 cut(s)	431
Eco24I	GRGCYC	2 cut(s)	246, 714
Eco57I	CTGAAG	2 cut(s)	579, 582
EcoO109I	RGGNCCY	1 cut(s)	710
EcoT14I	CCWWGG	2 cut(s)	282, 393
EcoT38I	GRGCYC	2 cut(s)	246, 714
ErhI	CCWWGG	2 cut(s)	282, 393
FaeI	CATG	3 cut(s)	286, 730, 735
FaiI	YATR	4 cut(s)	233, 284, 728, 733
FalI	AAGNNNNNCTT	4 cut(s)	20, 52, 580, 612
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	3 cut(s)	282, 726, 731
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	7 cut(s)	567, 570, 573, 576, 579, 582, 585
FokI	GGATG	4 cut(s)	194, 617, 637, 665
FriOI	GRGCYC	2 cut(s)	246, 714
Fsp4HI	GCNGC	7 cut(s)	567, 570, 573, 576, 579, 582, 585
GluI	GCNGC	7 cut(s)	567, 570, 573, 576, 579, 582, 585
HaeIII	GGCC	3 cut(s)	287, 431, 712
HapII	CCGG	3 cut(s)	225, 288, 302
HgaI	GACGC	1 cut(s)	398
Hin1I	GRCGYC	2 cut(s)	195, 390
Hin1II	CATG	3 cut(s)	286, 730, 735
HincII	GTYRAC	1 cut(s)	763
HindII	GTYRAC	1 cut(s)	763
HinfI	GANTC	7 cut(s)	4, 84, 90, 143, 278, 307, 439
HpaII	CCGG	3 cut(s)	225, 288, 302
Hpy166II	GTNNAC	2 cut(s)	611, 763
Hpy188I	TCNGA	6 cut(s)	16, 89, 142, 444, 544, 601
Hpy188III	TCNNGA	4 cut(s)	199, 452, 488, 665
Hpy8I	GTNNAC	2 cut(s)	611, 763
Hpy99I	CGWCG	5 cut(s)	155, 191, 200, 260, 392
HpyAV	CCTTC	4 cut(s)	52, 127, 622, 642
HpyCH4III	ACNGT	5 cut(s)	97, 366, 473, 509, 760
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	3 cut(s)	293, 468, 578
HpyF10VI	GCNNNNNNNGC	9 cut(s)	563, 572, 575, 578, 581, 584, 590, 728, 741
HpyF3I	CTNAG	3 cut(s)	132, 541, 700
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	195, 390
Hsp92II	CATG	3 cut(s)	286, 730, 735
LmnI	GCTCC	3 cut(s)	17, 116, 719
LpnPI	CCDG	9 cut(s)	113, 238, 301, 310, 315, 501, 510, 650, 702
Lsp1109I	GCAGC	7 cut(s)	553, 556, 559, 562, 590, 593, 596
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	246, 714
MluCI	AATT	4 cut(s)	56, 264, 455, 545
MlyI	GAGTC	4 cut(s)	13, 99, 137, 272
MmeI	TCCRAC	2 cut(s)	165, 171
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	4 cut(s)	426, 504, 513, 749
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	3 cut(s)	225, 288, 302
MvnI	CGCG	2 cut(s)	200, 453
MwoI	GCNNNNNNNGC	9 cut(s)	563, 572, 575, 578, 581, 584, 590, 728, 741
NcoI	CCATGG	1 cut(s)	282
NlaIII	CATG	3 cut(s)	286, 730, 735
NlaIV	GGNNCC	2 cut(s)	711, 712
NmuCI	GTSAC	1 cut(s)	91
NruI	TCGCGA	2 cut(s)	200, 453
NspI	RCATGY	1 cut(s)	735
NspV	TTCGAA	1 cut(s)	174
PaeI	GCATGC	1 cut(s)	735
PceI	AGGCCT	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 201, 252
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	3 cut(s)	84, 307, 439
PkrI	GCNGC	7 cut(s)	568, 571, 574, 577, 580, 583, 586
PleI	GAGTC	4 cut(s)	12, 98, 137, 272
PpsI	GAGTC	4 cut(s)	12, 98, 137, 272
PspN4I	GGNNCC	2 cut(s)	711, 712
PspOMI	GGGCCC	1 cut(s)	710
PspPI	GGNCC	2 cut(s)	710, 711
PstI	CTGCAG	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	722
RruI	TCGCGA	2 cut(s)	200, 453
RsaI	GTAC	2 cut(s)	212, 612
RsaNI	GTAC	2 cut(s)	211, 611
SaqAI	TTAA	4 cut(s)	426, 504, 513, 749
SatI	GCNGC	7 cut(s)	567, 570, 573, 576, 579, 582, 585
Sau96I	GGNCC	2 cut(s)	710, 711
SchI	GAGTC	4 cut(s)	13, 99, 137, 272
SduI	GDGCHC	2 cut(s)	246, 714
SetI	ASST	9 cut(s)	113, 138, 198, 329, 348, 526, 568, 724, 757
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	2 cut(s)	576, 756
SfuI	TTCGAA	1 cut(s)	174
SgrAI	CRCCGGYG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
SphI	GCATGC	1 cut(s)	735
Sse9I	AATT	4 cut(s)	56, 264, 455, 545
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	2 cut(s)	123, 422
StuI	AGGCCT	1 cut(s)	431
StyI	CCWWGG	2 cut(s)	282, 393
TaaI	ACNGT	5 cut(s)	97, 366, 473, 509, 760
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	174, 246
TaqII	GACCGA	2 cut(s)	218, 695
TasI	AATT	4 cut(s)	56, 264, 455, 545
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	3 cut(s)	84, 307, 439
Tru1I	TTAA	4 cut(s)	426, 504, 513, 749
Tru9I	TTAA	4 cut(s)	426, 504, 513, 749
TscAI	CASTG	1 cut(s)	100
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	7 cut(s)	566, 569, 572, 575, 578, 581, 584
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	276, 641, 687
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	1 cut(s)	100
Vha464I	CTTAAG	1 cut(s)	425
XapI	RAATTY	2 cut(s)	56, 455
XceI	RCATGY	1 cut(s)	735
XmnI	GAANNNNTTC	1 cut(s)	365
ZraI	GACGTC	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.