Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Reverse (-)

20692827 .. 20694204

Gene Structure 1378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG221500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTAGATGGGCTCGAACAAAGCGACGATGAAATTGAAATGGAGGACTCCATGGCCGGTGCAGAGCTGCCGGCGATTCGCAACGAGGAGTTCCGGTGGAAGAGAGTGGAGAAGCTCTGCGAAGATGTGAAACAGTTCGGCGAGGAAATGATTGACGACGGTACTCTCGACTCAATCTACGATTTCCGATCGATAAATTTCAGGGAAACTTTCAGTGAAAATAATGTTGGTCTTCTCACGGGAGATTCGGCAGTAAACGAAGATGCTCAGATCCTGATTTCCTATTTTATGAAGACATCGCATCATGAAGAGTATCTCTGTGTCAAGGTAAGGGCTTTTTGGTTCAGAAATACCAATGGAATGAAGGCTTTAAATAACAAACAGCTAATGTCCAAGTGGGCTGATGAAATGTCTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

139

Amino Acids

16.17

Weight (kDa)

4.45

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	38
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	4 cut(s)	67, 115, 385, 417
AluI	AGCT	4 cut(s)	67, 115, 385, 417
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	224, 299
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	2
BfaI	CTAG	2 cut(s)	414, 418
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmsI	GCATC	2 cut(s)	253, 310
BpiI	GAAGAC	2 cut(s)	224, 299
Bsa29I	ATCGAT	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	2 cut(s)	56, 70
BseCI	ATCGAT	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	57, 71, 94
BsnI	GGCC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	188, 270
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	304
BspPI	GGATC	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	56, 70
BssAI	RCCGGY	2 cut(s)	56, 70
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	188, 270
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	135, 161
Bst6I	CTCTTC	2 cut(s)	95, 303
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	51
BstKTI	GATC	2 cut(s)	191, 273
BstMBI	GATC	2 cut(s)	188, 270
BstMCI	CGRYCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	2 cut(s)	224, 299
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	56, 70
ClaI	ATCGAT	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	2 cut(s)	52, 305
CviJI	RGCY	9 cut(s)	13, 56, 67, 115, 335, 368, 385, 401, 417
CviKI_1	RGCY	9 cut(s)	13, 56, 67, 115, 335, 368, 385, 401, 417
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	2 cut(s)	190, 272
DpnII	GATC	2 cut(s)	188, 270
DraI	TTTAAA	1 cut(s)	372
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	95, 303
EarI	CTCTTC	2 cut(s)	95, 303
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	15
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	2 cut(s)	55, 308
FaiI	YATR	3 cut(s)	53, 290, 306
FatI	CATG	2 cut(s)	51, 304
Fnu4HI	GCNGC	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	2 cut(s)	414, 418
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	57, 71, 94
Hin1II	CATG	2 cut(s)	55, 308
HinfI	GANTC	4 cut(s)	47, 76, 170, 245
HpaII	CCGG	3 cut(s)	57, 71, 94
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	3 cut(s)	188, 270, 347
Hpy188III	TCNNGA	3 cut(s)	167, 274, 305
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	29, 161
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	135, 161
HpyCH4V	TGCA	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	2 cut(s)	55, 308
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	188, 270
LpnPI	CCDG	5 cut(s)	70, 84, 107, 187, 287
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	253, 310
MaeI	CTAG	2 cut(s)	414, 418
MalI	GATC	2 cut(s)	190, 272
MboI	GATC	2 cut(s)	188, 270
MboII	GAAGA	6 cut(s)	112, 134, 224, 272, 304, 320
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	2 cut(s)	33, 196
MlyI	GAGTC	2 cut(s)	41, 164
MnlI	CCTC	3 cut(s)	37, 79, 136
MroNI	GCCGGC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	371
MspI	CCGG	3 cut(s)	57, 71, 94
NaeI	GCCGGC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	188, 270
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	55, 308
PagI	TCATGA	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 165
PdiI	GCCGGC	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	76, 245
PkrI	GCNGC	1 cut(s)	69
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	2 cut(s)	41, 164
PpsI	GAGTC	2 cut(s)	41, 164
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	270
PvuI	CGATCG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	188, 270
SchI	GAGTC	2 cut(s)	41, 164
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	5 cut(s)	69, 117, 330, 387, 419
SfaNI	GCATC	2 cut(s)	253, 310
Sse9I	AATT	2 cut(s)	33, 196
SspMI	CTAG	2 cut(s)	414, 418
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	135, 161
TaqI	TCGA	3 cut(s)	15, 168, 191
TasI	AATT	2 cut(s)	33, 196
TfiI	GAWTC	2 cut(s)	76, 245
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	5 cut(s)	45, 305, 321, 377, 420
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	414, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.