Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Forward (+)

11921428 .. 11926403

Gene Structure 4976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0089600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGCCAAATGTGCCACACATCGCATGCATAATGAGAGTTAAAAAGGATCTTGAGGCTTTAGCTGATGTTCAACGAGTCATTGCGTCTTCTGGTGGGAGTGATGATGAGTATGCAAAGGAGAACGAGATACAAGCTAATTTGAATGATTCACTTCGGGCACAAGAGATTTTTTTCCGAGGAAAGTCAAGGTTGCGGTGGTTATCTGAGGGGGACCGGAATTCTTCTTTTTTCCATGCTATGTGTAGGACGCATCGAAATCGTTCTTCTATTACTGTACTAAGGGATGGTGATAAGATTCCGGTTGACATGGTGGTAAATTCAATTATTACAGCAATGGTAGTCAATGCAAATACATCTCGTAAAATAATTTACCATGTTGGAACCTCATTGCGGAATCCTCTTAAATTCTCTGATTTTAACAAATTTATGTTCCAATACTGCACAAAAAATCCATGGATTTACAATGATGGAAGGCCTGTCAAGGTTGGCAAGTTAAAAATGGTTACAACCATGGCCGCTTTTCGCTGGTACATGCAACCATTGCAGGGATTAAAGTCATTGAATAAAGAATTTGACCAATGTTTCCGAGATGTATGCCTTAACGATGACTTGAAAGACAAATCGGTAATACGGTTGATTGAGTTGTACGAACGAATTTTGCTATTCAAGGGGATCTTTGACGACACCAATTCAGAGGAATTGCGAAGGATAGCAAATTGGAGCTACATTGATGCAGAAAATTTTAATTTCAATCCAAAATGTATTGACTGGGAAGATTACTATATCCATAGTCACATTCCTGGCCTTGCGAAGAATGTTATTTTCAAACACAGTCAAAGCCGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

282

Amino Acids

32.86

Weight (kDa)

9.04

Isoelectric Point (pI)

45.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sterile	PF03015	208 - 273	3.5e-09	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	193, 391, 516
AclWI	GGATC	2 cut(s)	54, 680
AcoI	YGGCCR	1 cut(s)	513
AcsI	RAATTY	7 cut(s)	217, 316, 404, 422, 569, 654, 739
AfaI	GTAC	3 cut(s)	276, 530, 647
AfiI	CCNNNNNNNGG	2 cut(s)	390, 545
AgsI	TTSAA	8 cut(s)	71, 142, 321, 562, 613, 667, 751, 826
AjnI	CCWGG	1 cut(s)	799
AluBI	AGCT	3 cut(s)	62, 134, 723
AluI	AGCT	3 cut(s)	62, 134, 723
AlwI	GGATC	2 cut(s)	54, 680
AoxI	GGCC	3 cut(s)	473, 513, 802
ApoI	RAATTY	7 cut(s)	217, 316, 404, 422, 569, 654, 739
Asp700I	GAANNNNTTC	1 cut(s)	259
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	299
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	78
BccI	CCATC	2 cut(s)	278, 461
BcgI	CGANNNNNNTGC	4 cut(s)	239, 273, 576, 610
BciT130I	CCWGG	1 cut(s)	801
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	801
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	2 cut(s)	212, 382
BmrFI	CCNGG	1 cut(s)	801
BmrI	ACTGGG	1 cut(s)	778
BmsI	GCATC	2 cut(s)	259, 721
BmuI	ACTGGG	1 cut(s)	778
BpiI	GAAGAC	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	3 cut(s)	175, 452, 510
BsaWI	WCCGGW	2 cut(s)	213, 298
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 545
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	1 cut(s)	773
Bse3DI	GCAATG	4 cut(s)	78, 339, 386, 539
BseBI	CCWGG	1 cut(s)	801
BseDI	CCNNGG	3 cut(s)	175, 452, 510
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	390, 545
BseMI	GCAATG	4 cut(s)	78, 339, 386, 539
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	773
BseSI	GKGCMC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	424
BshFI	GGCC	3 cut(s)	475, 515, 804
BsiSI	CCGG	3 cut(s)	214, 299, 841
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	390, 545
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	3 cut(s)	475, 515, 804
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	46, 672
Bsp19I	CCATGG	2 cut(s)	452, 510
BspACI	CCGC	3 cut(s)	193, 391, 516
BspANI	GGCC	3 cut(s)	475, 515, 804
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	212, 382
BspPI	GGATC	2 cut(s)	54, 680
BsrDI	GCAATG	4 cut(s)	78, 339, 386, 539
BsrFI	RCCGGY	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	773
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	3 cut(s)	175, 452, 510
BssMI	GATC	2 cut(s)	46, 672
BssT1I	CCWWGG	2 cut(s)	452, 510
Bst2UI	CCWGG	1 cut(s)	801
Bst4CI	ACNGT	3 cut(s)	274, 633, 833
BstAPI	GCANNNNNTGC	1 cut(s)	541
BstC8I	GCNNGC	2 cut(s)	25, 842
BstDEI	CTNAG	2 cut(s)	204, 278
BstDSI	CCRYGG	2 cut(s)	452, 510
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	2 cut(s)	49, 675
BstMBI	GATC	2 cut(s)	46, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 541
BstNI	CCWGG	1 cut(s)	801
BstNSI	RCATGY	2 cut(s)	27, 535
BstSCI	CCNGG	1 cut(s)	799
BstSLI	GKGCMC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	46, 672
BstYI	RGATCY	2 cut(s)	46, 672
BsuRI	GGCC	3 cut(s)	475, 515, 804
BtgI	CCRYGG	2 cut(s)	452, 510
BtgZI	GCGATG	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	25, 842
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	2 cut(s)	72, 256
Csp6I	GTAC	3 cut(s)	275, 529, 646
CviAII	CATG	7 cut(s)	24, 233, 307, 374, 453, 511, 532
CviJI	RGCY	9 cut(s)	56, 62, 134, 475, 515, 723, 804, 840, 844
CviKI_1	RGCY	9 cut(s)	56, 62, 134, 475, 515, 723, 804, 840, 844
CviQI	GTAC	3 cut(s)	275, 529, 646
DdeI	CTNAG	2 cut(s)	204, 278
DpnI	GATC	2 cut(s)	48, 674
DpnII	GATC	2 cut(s)	46, 672
EaeI	YGGCCR	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	452, 510
Eco147I	AGGCCT	1 cut(s)	475
Eco47I	GGWCC	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	799
EcoT14I	CCWWGG	2 cut(s)	452, 510
EcoT22I	ATGCAT	1 cut(s)	29
ErhI	CCWWGG	2 cut(s)	452, 510
FaeI	CATG	7 cut(s)	27, 236, 310, 377, 456, 514, 535
FalI	AAGNNNNNCTT	2 cut(s)	659, 691
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	7 cut(s)	23, 232, 306, 373, 452, 510, 531
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	475, 515, 804
HapII	CCGG	3 cut(s)	214, 299, 841
HgaI	GACGC	2 cut(s)	72, 256
Hin1II	CATG	7 cut(s)	27, 236, 310, 377, 456, 514, 535
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HinfI	GANTC	4 cut(s)	75, 146, 295, 394
HpaII	CCGG	3 cut(s)	214, 299, 841
HphI	GGTGA	1 cut(s)	299
Hpy166II	GTNNAC	1 cut(s)	304
Hpy188I	TCNGA	5 cut(s)	176, 205, 412, 587, 694
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	1 cut(s)	304
HpyAV	CCTTC	2 cut(s)	465, 699
HpyCH4III	ACNGT	3 cut(s)	274, 633, 833
HpyCH4V	TGCA	7 cut(s)	27, 113, 347, 441, 535, 544, 734
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 541
HpyF3I	CTNAG	2 cut(s)	204, 278
Hsp92II	CATG	7 cut(s)	27, 236, 310, 377, 456, 514, 535
KroI	GCCGGC	1 cut(s)	840
KroNI	GCCGGC	1 cut(s)	842
Kzo9I	GATC	2 cut(s)	46, 672
LmnI	GCTCC	1 cut(s)	720
LpnPI	CCDG	9 cut(s)	75, 227, 312, 489, 511, 530, 754, 786, 813
LweI	GCATC	2 cut(s)	259, 721
MaeIII	GTNAC	2 cut(s)	502, 791
MalI	GATC	2 cut(s)	48, 674
MboI	GATC	2 cut(s)	46, 672
MboII	GAAGA	5 cut(s)	78, 213, 255, 785, 823
MflI	RGATCY	2 cut(s)	46, 672
MhlI	GDGCHC	1 cut(s)	160
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	358
MnlI	CCTC	6 cut(s)	46, 170, 199, 394, 408, 688
Mph1103I	ATGCAT	1 cut(s)	29
MroNI	GCCGGC	1 cut(s)	840
MroXI	GAANNNNTTC	1 cut(s)	259
MseI	TTAA	7 cut(s)	39, 402, 417, 494, 551, 600, 744
MspI	CCGG	3 cut(s)	214, 299, 841
MspR9I	CCNGG	1 cut(s)	801
MvaI	CCWGG	1 cut(s)	801
MwoI	GCNNNNNNNGC	2 cut(s)	10, 541
NaeI	GCCGGC	1 cut(s)	842
NcoI	CCATGG	2 cut(s)	452, 510
NdeII	GATC	2 cut(s)	46, 672
NgoMIV	GCCGGC	1 cut(s)	840
NlaIII	CATG	7 cut(s)	27, 236, 310, 377, 456, 514, 535
NlaIV	GGNNCC	2 cut(s)	212, 382
NmuCI	GTSAC	1 cut(s)	791
NsiI	ATGCAT	1 cut(s)	29
NspI	RCATGY	2 cut(s)	27, 535
PaeI	GCATGC	1 cut(s)	27
PceI	AGGCCT	1 cut(s)	475
PdiI	GCCGGC	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	259
PfeI	GAWTC	3 cut(s)	146, 295, 394
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	799
PspGI	CCWGG	1 cut(s)	799
PspN4I	GGNNCC	2 cut(s)	212, 382
PspPI	GGNCC	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	46, 672
RsaI	GTAC	3 cut(s)	276, 530, 647
RsaNI	GTAC	3 cut(s)	275, 529, 646
SaqAI	TTAA	7 cut(s)	39, 402, 417, 494, 551, 600, 744
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	46, 672
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	801
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	6 cut(s)	64, 136, 191, 386, 486, 725
SfaNI	GCATC	2 cut(s)	259, 721
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
SphI	GCATGC	1 cut(s)	27
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	3 cut(s)	193, 391, 516
StuI	AGGCCT	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	799
StyI	CCWWGG	2 cut(s)	452, 510
TaaI	ACNGT	3 cut(s)	274, 633, 833
TaqI	TCGA	1 cut(s)	253
TatI	WGTACW	1 cut(s)	274
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	3 cut(s)	146, 295, 394
Tru1I	TTAA	7 cut(s)	39, 402, 417, 494, 551, 600, 744
Tru9I	TTAA	7 cut(s)	39, 402, 417, 494, 551, 600, 744
TseFI	GTSAC	1 cut(s)	791
Tsp45I	GTSAC	1 cut(s)	791
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	7 cut(s)	217, 316, 404, 422, 569, 654, 739
XceI	RCATGY	2 cut(s)	27, 535
XmnI	GAANNNNTTC	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.