Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Reverse (-)

21245498 .. 21252047

Gene Structure 6550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG112600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTTAGATGGGCTCGAACAAAGCGACGATGAAATTGAAATGGAGGACTCCATGGCCGGTGCAGAGCTGCCGGCGATTCGCAACGAGGAGTTCCGGTGGAAGAGAGTGGAGAAGCTCTGTGAAGATGTGAAACAGTTCGGCGAGGAAATGATTGACGACGGTACTCTCGACTCAATCTACGATTTCCGATCGATAAATTTCAGGGAAACTTTCAGTGAAAATAATGTTGGTCTTCTCACGGGAGATTCGGCAGTAAACGAAGATGCTCAGATCCTGATTTCCTATTTTATGAAGACATCGCATCATGAAGAGTATCTCTGTGTCAAGAAGTATAATTGGCATGAAGTTGAACAAGGAAAGGTCTCAATGAGCCTCATAGCAGAGAGTCACTACCTGACCTCTTTCTATATCAGGCATGGGAACCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

143

Amino Acids

16.67

Weight (kDa)

4.49

Isoelectric Point (pI)

58.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	196
AfaI	GTAC	1 cut(s)	163
AgsI	TTSAA	2 cut(s)	38, 350
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	2 cut(s)	67, 115
AluI	AGCT	2 cut(s)	67, 115
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	265
AlwNI	CAGNNNCTG	1 cut(s)	274
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	15
BbsI	GAAGAC	2 cut(s)	224, 299
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	1 cut(s)	2
BcoDI	GTCTC	1 cut(s)	367
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	422
BmsI	GCATC	2 cut(s)	253, 310
BpiI	GAAGAC	2 cut(s)	224, 299
Bsa29I	ATCGAT	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse118I	RCCGGY	2 cut(s)	56, 70
BseCI	ATCGAT	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	191
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	57, 71, 94
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	367
Bsp1286I	GDGCHC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	188, 270
Bsp19I	CCATGG	1 cut(s)	51
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	191
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	367
BsrFI	RCCGGY	2 cut(s)	56, 70
BssAI	RCCGGY	2 cut(s)	56, 70
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	188, 270
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	135, 161
Bst6I	CTCTTC	2 cut(s)	95, 303
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	51
BstKTI	GATC	2 cut(s)	191, 273
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	188, 270
BstMCI	CGRYCG	1 cut(s)	191
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	2 cut(s)	224, 299
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
Bsu15I	ATCGAT	1 cut(s)	191
BsuRI	GGCC	1 cut(s)	56
BsuTUI	ATCGAT	1 cut(s)	191
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	274
CciI	TCATGA	1 cut(s)	304
Cfr10I	RCCGGY	2 cut(s)	56, 70
ClaI	ATCGAT	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	162
CviAII	CATG	4 cut(s)	52, 305, 341, 416
CviJI	RGCY	5 cut(s)	13, 56, 67, 115, 372
CviKI_1	RGCY	5 cut(s)	13, 56, 67, 115, 372
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	2 cut(s)	190, 272
DpnII	GATC	2 cut(s)	188, 270
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	95, 303
EarI	CTCTTC	2 cut(s)	95, 303
Eco130I	CCWWGG	1 cut(s)	51
Eco24I	GRGCYC	1 cut(s)	15
Eco31I	GGTCTC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	51
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	55, 308, 344, 419
FaiI	YATR	8 cut(s)	53, 290, 306, 333, 342, 377, 408, 417
FatI	CATG	4 cut(s)	51, 304, 340, 415
Fnu4HI	GCNGC	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	3 cut(s)	57, 71, 94
Hin1II	CATG	4 cut(s)	55, 308, 344, 419
HinfI	GANTC	5 cut(s)	47, 76, 170, 245, 385
HpaII	CCGG	3 cut(s)	57, 71, 94
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	188, 270
Hpy188III	TCNNGA	4 cut(s)	167, 274, 305, 325
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	29, 161
HpyCH4III	ACNGT	2 cut(s)	135, 161
HpyCH4V	TGCA	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	55, 308, 344, 419
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	188, 270
LpnPI	CCDG	7 cut(s)	70, 84, 107, 187, 287, 397, 407
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	2 cut(s)	253, 310
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	2 cut(s)	190, 272
MboI	GATC	2 cut(s)	188, 270
MboII	GAAGA	6 cut(s)	112, 134, 224, 272, 304, 320
MflI	RGATCY	1 cut(s)	270
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	4 cut(s)	33, 196, 334, 427
MlyI	GAGTC	3 cut(s)	41, 164, 394
MnlI	CCTC	5 cut(s)	37, 79, 136, 383, 409
MroNI	GCCGGC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	134
MspI	CCGG	3 cut(s)	57, 71, 94
NaeI	GCCGGC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	188, 270
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	4 cut(s)	55, 308, 344, 419
NlaIV	GGNNCC	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	386
PagI	TCATGA	1 cut(s)	304
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 165
PdiI	GCCGGC	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	76, 245
PkrI	GCNGC	1 cut(s)	69
Ple19I	CGATCG	1 cut(s)	191
PleI	GAGTC	3 cut(s)	41, 164, 393
PpsI	GAGTC	3 cut(s)	41, 164, 393
PspN4I	GGNNCC	1 cut(s)	422
PstNI	CAGNNNCTG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	270
PvuI	CGATCG	1 cut(s)	191
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	2 cut(s)	188, 270
SchI	GAGTC	3 cut(s)	41, 164, 394
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	5 cut(s)	69, 117, 363, 396, 401
SfaNI	GCATC	2 cut(s)	253, 310
Sse9I	AATT	4 cut(s)	33, 196, 334, 427
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	135, 161
TaqI	TCGA	3 cut(s)	15, 168, 191
TasI	AATT	4 cut(s)	33, 196, 334, 427
TfiI	GAWTC	2 cut(s)	76, 245
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	386
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	4 cut(s)	45, 305, 321, 357
TspRI	CASTG	1 cut(s)	220
XapI	RAATTY	1 cut(s)	196
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.