Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Forward (+)

56450750 .. 56455226

Gene Structure 4477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0408900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGGTGTCCGACGCAAGCAAGAAGAAGGTGGCTCAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGTGGAAAGGCAGCGGCGGCTGCTTCCTCGAAATCGGCGTCGGAGTCGCAGAATGGAGTGGATAAGCTCGCTAATGGTGTTGATGCGATGCACATATCGGATCGGACTTGCACCGGCGTGCTTTGCTCTCATCCTCTCTCCAGGGACATCCGGATTGAGTCTCTATCAGTTACTTTTCATGGGCACGATTTGATAGTTGATTCTGAACTGGAGCTTAATTATGGCAGACGCTATGGTTTACTTGGGTTGAATGGGTGTGGTAAATCTACTCTCCTTACTGCAATAGGGTGCCGAGAGCTTCCTATTCCAGATCACATGGATATCTATCATCTCAGCAGGGAAATTGAAGCTTCAGATATGTCTTCACTTGATGCTGTCATTAGCTGTGATGAGGAGAGGATTAGATTGGAGAAAGAAGTTGAAGAATTGGCAGCTCAGGATGATGGAGGTGGAGAGCAGCTTGAACGCATTTATGAGCGCCTTGAAGCTCTGGATGCAGCAACTGCAGAGAAGCGTGCTGCTGAAATTCTATATGGTCTTGGTTTTGACAAACAGATGCAAGCAAAGAAAACTCGAGATTTTTCTGGTGGTTGGAGGATGAGGATTGCGCTTGCACGTGCTCTATTTATTAACCCAACCATCCTGTTGCTTGATGAGCCTACCAATCATCTTGATCTTGAAGCTTGTGTGTGGTTGGAGGAGACTCTGAAGAAATTTGAACGCATCTTGGTTGTGGTTTCACATTCTCAGGATTTCCTAAATGGTGTTTGCACAAATATCATTCACATGCAGAGCAAGAAGCTGAAGATCTACTCTGGAAACTATGATCAATATGTCCAGACACGTTCAGAACTGGAAGAAAATCAGATGAAACAGTACAAGTGGGAGCAAGAACAGATTTCTAACATGAAAGAGTATATTGCTCGTTTTGGTCACGGGTCAGCGAAACTAGCTCGCCAGGCACAAAGCAAAGAGAAGACTCTAGCTAAAATGGAGCGTGGTGGGCTTACGGAAAAGGTGGCCAGAGACAAGGTTTTAGTCTTTCGTTTTGTTGATGTGGGAAAGCTGCCACCACCTGTACTTCAGTTCGTTGAAGTCTCATTTGGTTACACTCCTGATAATCTGATCTACAAGAACATTGACTTTGGTGTTGATTTGGATTCGCGTGTAGCTCTGGTTGGGCCCAATGGAGCTGGAAAGAGTACTCTCCTGAAGCTGATGACGGGGGAATTGACTCCTCTTGATGGCATGGTCCGGAGGCACAATCACCTTAGAATCGCTCAATTCCATCAGCACTTGACTGAGAAGCTTGATATGGAGCTGTCTGCCCTCCAGTTTATGATCAAAGAGTACCCAGGAAATGAGGAAGAAAAGATGAGGGCTTCAATTGGTAAATTTGGACTTACAGGCAAGGCACAGGTGATGGCAATGAGCAATTTATCAGATGGGCAGAGGAGCCGAGTGATATTTGCTTGGTTGGCGTTTAGGCAGCCTCAGATGCTTCTGTTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCACTGGCTGAGGCGTTGAATGAGTGGGATGGGGGTCTGGTTCTGGTTAGCCATGATTTCAGGCTCATAAACCAGGTAGCTCATGAGATTTGGGTATGTGAAAATCAAGCTGTGACCCGGTGGGAGGGTGATATTATGCAATTTAAAAACCACCTAAAGTCAAAGGCTGGATTAGGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

597

Amino Acids

66.86

Weight (kDa)

6.03

Isoelectric Point (pI)

36.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	89 - 243	1.8e-21	ABC transporter
ABC_tran_Xtn	PF12848	282 - 358	3.2e-22	ABC transporter
ABC_tran	PF00005	399 - 529	1.6e-22	ABC transporter
AAA_21	PF13304	489 - 556	6e-06	AAA domain, putative AbiEii toxin, Type IV TA system

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	351
AccII	CGCG	1 cut(s)	1228
AccIII	TCCGGA	2 cut(s)	213, 1317
AciI	CCGC	6 cut(s)	44, 47, 50, 53, 77, 80
AclWI	GGATC	1 cut(s)	171
AcoI	YGGCCR	2 cut(s)	54, 1083
AcsI	RAATTY	3 cut(s)	588, 776, 1457
AcuI	CTGAAG	5 cut(s)	399, 791, 887, 1130, 1295
AcvI	CACGTG	1 cut(s)	680
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	4 cut(s)	941, 1143, 1267, 1415
AfiI	CCNNNNNNNGG	2 cut(s)	1307, 1735
AflIII	ACRYGT	1 cut(s)	905
AjnI	CCWGG	4 cut(s)	203, 1020, 1417, 1683
AjuI	GAANNNNNNNTTGG	2 cut(s)	1149, 1181
AleI	CACNNNNGTG	1 cut(s)	179
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	5 cut(s)	228, 758, 1083, 1165, 1595
AlwI	GGATC	1 cut(s)	171
AlwNI	CAGNNNCTG	1 cut(s)	566
Ama87I	CYCGRG	1 cut(s)	636
Aor13HI	TCCGGA	2 cut(s)	213, 1317
AoxI	GGCC	3 cut(s)	54, 1083, 1244
ApaI	GGGCCC	1 cut(s)	1248
ApeKI	GCWGC	8 cut(s)	74, 83, 494, 520, 560, 581, 1129, 1552
ApoI	RAATTY	3 cut(s)	588, 776, 1457
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	2 cut(s)	543, 673
AspS9I	GGNCC	3 cut(s)	1244, 1245, 1315
AsuC2I	CCSGG	1 cut(s)	1729
AsuHPI	GGTGA	3 cut(s)	1322, 1495, 1751
AvaI	CYCGRG	1 cut(s)	636
AvaII	GGWCC	1 cut(s)	1315
BaeGI	GKGCMC	2 cut(s)	249, 1248
BalI	TGGCCA	1 cut(s)	1085
BanI	GGYRCC	1 cut(s)	351
BanII	GRGCYC	1 cut(s)	1248
BbrPI	CACGTG	1 cut(s)	680
BbsI	GAAGAC	2 cut(s)	417, 1046
Bbv12I	GWGCWC	1 cut(s)	685
BbvCI	CCTCAGC	1 cut(s)	1620
BbvI	GCAGC	8 cut(s)	70, 86, 506, 532, 568, 572, 1116, 1564
BccI	CCATC	7 cut(s)	500, 710, 1301, 1359, 1480, 1502, 1634
BciT130I	CCWGG	4 cut(s)	205, 1022, 1419, 1685
BclI	TGATCA	2 cut(s)	889, 1404
BcnI	CCSGG	1 cut(s)	1729
BcoDI	GTCTC	5 cut(s)	228, 758, 1083, 1165, 1595
BfaI	CTAG	2 cut(s)	1013, 1046
BfmI	CTRYAG	1 cut(s)	567
BfoI	RGCGCY	1 cut(s)	544
BglII	AGATCT	1 cut(s)	870
BmcAI	AGTACT	1 cut(s)	1267
Bme1390I	CCNGG	5 cut(s)	205, 1022, 1419, 1685, 1729
Bme18I	GGWCC	1 cut(s)	1315
BmeT110I	CYCGRG	1 cut(s)	636
BmgT120I	GGNCC	3 cut(s)	1244, 1245, 1315
BmiI	GGNNCC	3 cut(s)	353, 1246, 1520
BmrFI	CCNGG	5 cut(s)	205, 1022, 1419, 1685, 1729
BmsI	GCATC	7 cut(s)	136, 141, 424, 547, 609, 795, 1551
BpiI	GAAGAC	2 cut(s)	417, 1046
BpmI	CTGGAG	3 cut(s)	187, 293, 1379
Bpu10I	CCTNAGC	2 cut(s)	498, 1620
BpuMI	CCSGG	1 cut(s)	1729
BsaAI	YACGTR	1 cut(s)	680
BsaBI	GATNNNNATC	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	204, 1417
BsaWI	WCCGGW	2 cut(s)	213, 1317
Bsc4I	CCNNNNNNNGG	2 cut(s)	1307, 1735
Bse118I	RCCGGY	1 cut(s)	176
Bse1I	ACTGG	4 cut(s)	276, 921, 1396, 1620
Bse3DI	GCAATG	1 cut(s)	1497
Bse8I	GATNNNNATC	1 cut(s)	387
BseAI	TCCGGA	2 cut(s)	213, 1317
BseBI	CCWGG	4 cut(s)	205, 1022, 1419, 1685
BseDI	CCNNGG	2 cut(s)	204, 1417
BseGI	GGATG	8 cut(s)	193, 210, 508, 562, 666, 702, 1579, 1645
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	1307, 1735
BseMI	GCAATG	1 cut(s)	1497
BseMII	CTCAG	7 cut(s)	47, 409, 512, 824, 1356, 1571, 1611
BseNI	ACTGG	4 cut(s)	276, 921, 1396, 1620
BseRI	GAGGAG	4 cut(s)	470, 776, 1290, 1531
BseSI	GKGCMC	2 cut(s)	249, 1248
BseXI	GCAGC	8 cut(s)	70, 86, 506, 532, 568, 572, 1116, 1564
Bsh1236I	CGCG	1 cut(s)	1228
BshFI	GGCC	3 cut(s)	56, 1085, 1246
BshNI	GGYRCC	1 cut(s)	351
BsiHKAI	GWGCWC	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	636
BsiSI	CCGG	4 cut(s)	177, 214, 1318, 1729
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	1307, 1735
BsmAI	GTCTC	5 cut(s)	228, 758, 1083, 1165, 1595
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	56, 1085, 1246
BsoBI	CYCGRG	1 cut(s)	636
Bsp120I	GGGCCC	1 cut(s)	1244
Bsp1286I	GDGCHC	3 cut(s)	249, 685, 1248
Bsp13I	TCCGGA	2 cut(s)	213, 1317
Bsp143I	GATC	7 cut(s)	163, 373, 736, 870, 889, 1188, 1404
BspACI	CCGC	6 cut(s)	44, 47, 50, 53, 77, 80
BspANI	GGCC	3 cut(s)	56, 1085, 1246
BspCNI	CTCAG	7 cut(s)	46, 408, 511, 823, 1357, 1570, 1612
BspEI	TCCGGA	2 cut(s)	213, 1317
BspFNI	CGCG	1 cut(s)	1228
BspHI	TCATGA	1 cut(s)	1693
BspLI	GGNNCC	3 cut(s)	353, 1246, 1520
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	1497
BsrFI	RCCGGY	1 cut(s)	176
BsrI	ACTGG	4 cut(s)	276, 921, 1396, 1620
BssAI	RCCGGY	1 cut(s)	176
BssECI	CCNNGG	2 cut(s)	204, 1417
BssMI	GATC	7 cut(s)	163, 373, 736, 870, 889, 1188, 1404
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	4 cut(s)	205, 1022, 1419, 1685
Bst4CI	ACNGT	1 cut(s)	939
BstACI	GRCGYC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	680
BstC8I	GCNNGC	7 cut(s)	16, 132, 182, 579, 624, 675, 1018
BstDEI	CTNAG	8 cut(s)	33, 395, 498, 810, 1334, 1365, 1557, 1620
BstF5I	GGATG	8 cut(s)	193, 210, 508, 562, 666, 702, 1579, 1645
BstFNI	CGCG	1 cut(s)	1228
BstH2I	RGCGCY	1 cut(s)	544
BstHHI	GCGC	2 cut(s)	543, 673
BstKTI	GATC	7 cut(s)	166, 376, 739, 873, 892, 1191, 1407
BstMAI	GTCTC	5 cut(s)	228, 758, 1083, 1165, 1595
BstMBI	GATC	7 cut(s)	163, 373, 736, 870, 889, 1188, 1404
BstNI	CCWGG	4 cut(s)	205, 1022, 1419, 1685
BstNSI	RCATGY	1 cut(s)	853
BstSCI	CCNGG	5 cut(s)	203, 1020, 1417, 1683, 1727
BstSFI	CTRYAG	1 cut(s)	567
BstSLI	GKGCMC	2 cut(s)	249, 1248
BstUI	CGCG	1 cut(s)	1228
BstV1I	GCAGC	8 cut(s)	70, 86, 506, 532, 568, 572, 1116, 1564
BstV2I	GAAGAC	2 cut(s)	417, 1046
BstX2I	RGATCY	1 cut(s)	870
BstYI	RGATCY	1 cut(s)	870
BsuRI	GGCC	3 cut(s)	56, 1085, 1246
BtgZI	GCGATG	1 cut(s)	164
BtsCI	GGATG	8 cut(s)	193, 210, 508, 562, 666, 702, 1579, 1645
BtsIMutI	CAGTG	1 cut(s)	1613
Cac8I	GCNNGC	7 cut(s)	16, 132, 182, 579, 624, 675, 1018
CaiI	CAGNNNCTG	1 cut(s)	566
CciI	TCATGA	1 cut(s)	1693
CfoI	GCGC	2 cut(s)	543, 673
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	3 cut(s)	1244, 1245, 1315
CseI	GACGC	3 cut(s)	20, 90, 300
CsiI	ACCWGGT	1 cut(s)	1683
Csp6I	GTAC	4 cut(s)	940, 1142, 1266, 1414
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	7 cut(s)	242, 379, 850, 970, 1312, 1664, 1694
CviQI	GTAC	4 cut(s)	940, 1142, 1266, 1414
DdeI	CTNAG	8 cut(s)	33, 395, 498, 810, 1334, 1365, 1557, 1620
DpnI	GATC	7 cut(s)	165, 375, 738, 872, 891, 1190, 1406
DpnII	GATC	7 cut(s)	163, 373, 736, 870, 889, 1188, 1404
DraI	TTTAAA	1 cut(s)	1756
EaeI	YGGCCR	2 cut(s)	54, 1083
Eco24I	GRGCYC	1 cut(s)	1248
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	1315
Eco57I	CTGAAG	5 cut(s)	399, 791, 887, 1130, 1295
Eco72I	CACGTG	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	636
EcoRII	CCWGG	4 cut(s)	203, 1020, 1417, 1683
EcoRV	GATATC	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	1248
FaeI	CATG	7 cut(s)	245, 382, 853, 973, 1315, 1667, 1697
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	7 cut(s)	241, 378, 849, 969, 1311, 1663, 1693
FbaI	TGATCA	2 cut(s)	889, 1404
FokI	GGATG	8 cut(s)	180, 197, 515, 569, 673, 689, 1586, 1652
FriOI	GRGCYC	1 cut(s)	1248
FspBI	CTAG	2 cut(s)	1013, 1046
GlaI	GCGC	2 cut(s)	542, 672
GsuI	CTGGAG	3 cut(s)	187, 293, 1379
HaeII	RGCGCY	1 cut(s)	544
HaeIII	GGCC	3 cut(s)	56, 1085, 1246
HapII	CCGG	4 cut(s)	177, 214, 1318, 1729
HgaI	GACGC	3 cut(s)	20, 90, 300
HhaI	GCGC	2 cut(s)	543, 673
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	7 cut(s)	245, 382, 853, 973, 1315, 1667, 1697
Hin6I	GCGC	2 cut(s)	541, 671
HinP1I	GCGC	2 cut(s)	541, 671
HindIII	AAGCTT	3 cut(s)	411, 744, 1370
HinfI	GANTC	9 cut(s)	107, 221, 263, 766, 1042, 1223, 1297, 1338, 1610
HpaII	CCGG	4 cut(s)	177, 214, 1318, 1729
HphI	GGTGA	3 cut(s)	1322, 1495, 1751
Hpy166II	GTNNAC	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	2 cut(s)	14, 106
HpyAV	CCTTC	2 cut(s)	19, 34
HpyCH4III	ACNGT	1 cut(s)	939
HpyCH4IV	ACGT	2 cut(s)	679, 907
HpyF3I	CTNAG	8 cut(s)	33, 395, 498, 810, 1334, 1365, 1557, 1620
HpySE526I	ACGT	2 cut(s)	679, 907
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	7 cut(s)	245, 382, 853, 973, 1315, 1667, 1697
HspAI	GCGC	2 cut(s)	541, 671
Kpn2I	TCCGGA	2 cut(s)	213, 1317
Ksp22I	TGATCA	2 cut(s)	889, 1404
Kzo9I	GATC	7 cut(s)	163, 373, 736, 870, 889, 1188, 1404
LmnI	GCTCC	6 cut(s)	274, 949, 1057, 1253, 1381, 1518
Lsp1109I	GCAGC	8 cut(s)	70, 86, 506, 532, 568, 572, 1116, 1564
LweI	GCATC	7 cut(s)	136, 141, 424, 547, 609, 795, 1551
MabI	ACCWGGT	1 cut(s)	1683
MaeI	CTAG	2 cut(s)	1013, 1046
MaeII	ACGT	2 cut(s)	679, 907
MaeIII	GTNAC	4 cut(s)	232, 995, 1169, 1723
MalI	GATC	7 cut(s)	165, 375, 738, 872, 891, 1190, 1406
MboI	GATC	7 cut(s)	163, 373, 736, 870, 889, 1188, 1404
MboII	GAAGA	9 cut(s)	34, 49, 417, 497, 784, 880, 932, 1051, 1442
MfeI	CAATTG	2 cut(s)	1449, 1605
MflI	RGATCY	1 cut(s)	870
MhlI	GDGCHC	3 cut(s)	249, 685, 1248
MlsI	TGGCCA	1 cut(s)	1085
MluNI	TGGCCA	1 cut(s)	1085
MlyI	GAGTC	6 cut(s)	116, 230, 760, 1036, 1291, 1604
MmeI	TCCRAC	5 cut(s)	33, 84, 635, 738, 1551
Mox20I	TGGCCA	1 cut(s)	1085
MroI	TCCGGA	2 cut(s)	213, 1317
MscI	TGGCCA	1 cut(s)	1085
MseI	TTAA	4 cut(s)	279, 693, 1755, 1792
MslI	CAYNNNNRTG	2 cut(s)	179, 848
Msp20I	TGGCCA	1 cut(s)	1085
MspA1I	CMGCKG	1 cut(s)	77
MspI	CCGG	4 cut(s)	177, 214, 1318, 1729
MspR9I	CCNGG	5 cut(s)	205, 1022, 1419, 1685, 1729
MunI	CAATTG	2 cut(s)	1449, 1605
MvaI	CCWGG	4 cut(s)	205, 1022, 1419, 1685
MvnI	CGCG	1 cut(s)	1228
NciI	CCSGG	1 cut(s)	1729
NdeII	GATC	7 cut(s)	163, 373, 736, 870, 889, 1188, 1404
NlaIII	CATG	7 cut(s)	245, 382, 853, 973, 1315, 1667, 1697
NlaIV	GGNNCC	3 cut(s)	353, 1246, 1520
NmeAIII	GCCGAG	2 cut(s)	380, 1547
NmuCI	GTSAC	2 cut(s)	995, 1723
NspI	RCATGY	1 cut(s)	853
OliI	CACNNNNGTG	1 cut(s)	179
PaeR7I	CTCGAG	1 cut(s)	636
PagI	TCATGA	1 cut(s)	1693
PcsI	WCGNNNNNNNCGW	1 cut(s)	98
PfeI	GAWTC	3 cut(s)	263, 1223, 1338
PleI	GAGTC	6 cut(s)	115, 229, 760, 1036, 1291, 1604
PmaCI	CACGTG	1 cut(s)	680
PmlI	CACGTG	1 cut(s)	680
PpsI	GAGTC	6 cut(s)	115, 229, 760, 1036, 1291, 1604
Ppu21I	YACGTR	1 cut(s)	680
Psp6I	CCWGG	4 cut(s)	203, 1020, 1417, 1683
PspCI	CACGTG	1 cut(s)	680
PspGI	CCWGG	4 cut(s)	203, 1020, 1417, 1683
PspN4I	GGNNCC	3 cut(s)	353, 1246, 1520
PspOMI	GGGCCC	1 cut(s)	1244
PspPI	GGNCC	3 cut(s)	1244, 1245, 1315
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	1 cut(s)	566
PsuI	RGATCY	1 cut(s)	870
RsaI	GTAC	4 cut(s)	941, 1143, 1267, 1415
RsaNI	GTAC	4 cut(s)	940, 1142, 1266, 1414
RseI	CAYNNNNRTG	2 cut(s)	179, 848
SaqAI	TTAA	4 cut(s)	279, 693, 1755, 1792
Sau3AI	GATC	7 cut(s)	163, 373, 736, 870, 889, 1188, 1404
Sau96I	GGNCC	3 cut(s)	1244, 1245, 1315
ScaI	AGTACT	1 cut(s)	1267
SchI	GAGTC	6 cut(s)	116, 230, 760, 1036, 1291, 1604
ScrFI	CCNGG	5 cut(s)	205, 1022, 1419, 1685, 1729
SduI	GDGCHC	3 cut(s)	249, 685, 1248
SexAI	ACCWGGT	1 cut(s)	1683
SfaNI	GCATC	7 cut(s)	136, 141, 424, 547, 609, 795, 1551
SfcI	CTRYAG	1 cut(s)	567
Sfr274I	CTCGAG	1 cut(s)	636
SgrAI	CRCCGGYG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	1315
SlaI	CTCGAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	179, 848
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
SsiI	CCGC	6 cut(s)	44, 47, 50, 53, 77, 80
SspMI	CTAG	2 cut(s)	1013, 1046
StyD4I	CCNGG	5 cut(s)	203, 1020, 1417, 1683, 1727
TaaI	ACNGT	1 cut(s)	939
TaiI	ACGT	2 cut(s)	682, 910
TaqI	TCGA	2 cut(s)	92, 637
TatI	WGTACW	3 cut(s)	939, 1141, 1265
TauI	GCSGC	6 cut(s)	47, 50, 53, 56, 80, 83
TfiI	GAWTC	3 cut(s)	263, 1223, 1338
Tru1I	TTAA	4 cut(s)	279, 693, 1755, 1792
Tru9I	TTAA	4 cut(s)	279, 693, 1755, 1792
TscAI	CASTG	1 cut(s)	1620
TseFI	GTSAC	2 cut(s)	995, 1723
TseI	GCWGC	8 cut(s)	74, 83, 494, 520, 560, 581, 1129, 1552
Tsp45I	GTSAC	2 cut(s)	995, 1723
TspDTI	ATGAA	3 cut(s)	230, 947, 986
TspGWI	ACGGA	1 cut(s)	1088
TspRI	CASTG	1 cut(s)	1620
VpaK11BI	GGWCC	1 cut(s)	1315
XapI	RAATTY	3 cut(s)	588, 776, 1457
XceI	RCATGY	1 cut(s)	853
XhoI	CTCGAG	1 cut(s)	636
XspI	CTAG	2 cut(s)	1013, 1046
ZrmI	AGTACT	1 cut(s)	1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.