Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014046.1

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Reverse (-)

12071 .. 13482

Gene Structure 1412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014046.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 560 bp

ccttctcttcccccaaatttccacacactcaaaatctaatccgattccgagtcactgtccagtccccaagctccgccttccctgccaaatctcagctcttggactccgacgacgatgaggaggaagacgagttcgaagaggacgacgacgaagacgtcgcggccgatgagtacgatgacatttccggcgatatgttagacgggctcgaacaaagcgacgatgaaattgaaatggaggactccatggccagtgtagagccgccggcgattcgcaacgaggagttccggtggaagagagtggagaagctctgcgaagatgtgaaacagttcggcgaggaaatgattgacgacggtgctctcgcctcaatctacgatttccaaatcgataaatttcaggtgtgctttgatttgtactacgcacattttccgattttatgtatcaaattggtttatcatgtaccagttttgagttacgaatctattggttacttttggatagagattagctatacaagcattcttgagaagttcatcagtagttgtgactgcgccgacgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

185

Amino Acids

21.42

Weight (kDa)

4.05

Isoelectric Point (pI)

68.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	154
AatII	GACGTC	1 cut(s)	158
AccII	CGCG	1 cut(s)	160
AciI	CCGC	3 cut(s)	74, 160, 259
AcoI	YGGCCR	2 cut(s)	161, 245
AcsI	RAATTY	2 cut(s)	16, 388
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	3 cut(s)	172, 412, 458
AgsI	TTSAA	1 cut(s)	229
AloI	GAACNNNNNNTCC	2 cut(s)	115, 147
AluBI	AGCT	4 cut(s)	71, 96, 306, 506
AluI	AGCT	4 cut(s)	71, 96, 306, 506
Alw21I	GWGCWC	1 cut(s)	357
AoxI	GGCC	2 cut(s)	161, 245
ApoI	RAATTY	2 cut(s)	16, 388
Asp700I	GAANNNNTTC	1 cut(s)	325
AspLEI	GCGC	1 cut(s)	550
AsuII	TTCGAA	1 cut(s)	134
BalI	TGGCCA	1 cut(s)	247
BanII	GRGCYC	1 cut(s)	206
BbsI	GAAGAC	2 cut(s)	131, 158
Bbv12I	GWGCWC	1 cut(s)	357
BisI	GCNGC	2 cut(s)	161, 259
BlsI	GCNGC	2 cut(s)	162, 260
BpiI	GAAGAC	2 cut(s)	131, 158
Bpu14I	TTCGAA	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	541
Bsa29I	ATCGAT	1 cut(s)	383
BsaHI	GRCGYC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bse118I	RCCGGY	1 cut(s)	261
Bse1I	ACTGG	3 cut(s)	60, 248, 460
BseCI	ATCGAT	1 cut(s)	383
BseDI	CCNNGG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	106
BseNI	ACTGG	3 cut(s)	60, 248, 460
BseRI	GAGGAG	2 cut(s)	133, 292
BseX3I	CGGCCG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	160
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	2 cut(s)	163, 247
BshVI	ATCGAT	1 cut(s)	383
BsiEI	CGRYCG	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	357
BsiSI	CCGG	3 cut(s)	185, 262, 285
BslFI	GGGAC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	48
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	163, 247
Bsp119I	TTCGAA	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	206, 357
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	3 cut(s)	74, 160, 259
BspANI	GGCC	2 cut(s)	163, 247
BspCNI	CTCAG	1 cut(s)	105
BspDI	ATCGAT	1 cut(s)	383
BspFNI	CGCG	1 cut(s)	160
BspT104I	TTCGAA	1 cut(s)	134
BsrFI	RCCGGY	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	60, 248, 460
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	242
BssNI	GRCGYC	1 cut(s)	155
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	3 cut(s)	57, 326, 352
Bst6I	CTCTTC	3 cut(s)	12, 131, 286
BstACI	GRCGYC	1 cut(s)	155
BstBI	TTCGAA	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	263
BstDEI	CTNAG	1 cut(s)	92
BstDSI	CCRYGG	1 cut(s)	242
BstFNI	CGCG	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	550
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 512
BstUI	CGCG	1 cut(s)	160
BstV2I	GAAGAC	2 cut(s)	131, 158
BstZI	CGGCCG	1 cut(s)	161
Bsu15I	ATCGAT	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	163, 247
BsuTUI	ATCGAT	1 cut(s)	383
BtgI	CCRYGG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	53, 255
Cac8I	GCNNGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	550
Cfr10I	RCCGGY	1 cut(s)	261
ClaI	ATCGAT	1 cut(s)	383
Csp6I	GTAC	3 cut(s)	171, 411, 457
CviAII	CATG	2 cut(s)	243, 454
CviJI	RGCY	8 cut(s)	71, 96, 163, 204, 247, 258, 306, 506
CviKI_1	RGCY	8 cut(s)	71, 96, 163, 204, 247, 258, 306, 506
CviQI	GTAC	3 cut(s)	171, 411, 457
DdeI	CTNAG	1 cut(s)	92
DrdI	GACNNNNNNGTC	1 cut(s)	154
DseDI	GACNNNNNNGTC	1 cut(s)	154
EaeI	YGGCCR	2 cut(s)	161, 245
EagI	CGGCCG	1 cut(s)	161
Eam1104I	CTCTTC	3 cut(s)	12, 131, 286
EarI	CTCTTC	3 cut(s)	12, 131, 286
EciI	GGCGGA	1 cut(s)	63
EclXI	CGGCCG	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	242
Eco24I	GRGCYC	1 cut(s)	206
Eco52I	CGGCCG	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	246, 457
FaiI	YATR	5 cut(s)	193, 244, 435, 455, 509
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	2 cut(s)	242, 453
Fnu4HI	GCNGC	2 cut(s)	161, 259
FriOI	GRGCYC	1 cut(s)	206
Fsp4HI	GCNGC	2 cut(s)	161, 259
GlaI	GCGC	1 cut(s)	549
GluI	GCNGC	2 cut(s)	161, 259
HaeIII	GGCC	2 cut(s)	163, 247
HapII	CCGG	3 cut(s)	185, 262, 285
HhaI	GCGC	1 cut(s)	550
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	246, 457
Hin6I	GCGC	1 cut(s)	548
HinP1I	GCGC	1 cut(s)	548
HinfI	GANTC	6 cut(s)	44, 50, 103, 238, 267, 475
HpaII	CCGG	3 cut(s)	185, 262, 285
Hpy188I	TCNGA	4 cut(s)	43, 49, 108, 428
Hpy188III	TCNNGA	1 cut(s)	520
Hpy99I	CGWCG	8 cut(s)	112, 115, 148, 151, 160, 220, 352, 556
HpyAV	CCTTC	2 cut(s)	12, 87
HpyCH4III	ACNGT	3 cut(s)	57, 326, 352
HpyCH4IV	ACGT	1 cut(s)	155
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 512
HpyF3I	CTNAG	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	246, 457
HspAI	GCGC	1 cut(s)	548
KroI	GCCGGC	1 cut(s)	261
KroNI	GCCGGC	1 cut(s)	263
LmnI	GCTCC	1 cut(s)	76
LpnPI	CCDG	8 cut(s)	73, 95, 198, 261, 275, 298, 379, 473
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	4 cut(s)	51, 469, 484, 541
MboII	GAAGA	5 cut(s)	136, 148, 163, 303, 325
MhlI	GDGCHC	2 cut(s)	206, 357
MlsI	TGGCCA	1 cut(s)	247
MluCI	AATT	4 cut(s)	16, 224, 388, 442
MluNI	TGGCCA	1 cut(s)	247
MlyI	GAGTC	3 cut(s)	59, 97, 232
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	7 cut(s)	111, 114, 132, 228, 270, 327, 372
Mox20I	TGGCCA	1 cut(s)	247
MreI	CGCCGGCG	1 cut(s)	261
MroNI	GCCGGC	1 cut(s)	261
MroXI	GAANNNNTTC	1 cut(s)	325
MscI	TGGCCA	1 cut(s)	247
Msp20I	TGGCCA	1 cut(s)	247
MspI	CCGG	3 cut(s)	185, 262, 285
Mva1269I	GAATGC	1 cut(s)	515
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	82, 512
NaeI	GCCGGC	1 cut(s)	263
NcoI	CCATGG	1 cut(s)	242
NgoMIV	GCCGGC	1 cut(s)	261
NlaIII	CATG	2 cut(s)	246, 457
NmuCI	GTSAC	2 cut(s)	51, 541
NspV	TTCGAA	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	4 cut(s)	140, 152, 161, 212
PctI	GAATGC	1 cut(s)	515
PdiI	GCCGGC	1 cut(s)	263
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	3 cut(s)	44, 267, 475
PkrI	GCNGC	2 cut(s)	162, 260
PleI	GAGTC	3 cut(s)	58, 97, 232
PpsI	GAGTC	3 cut(s)	58, 97, 232
RsaI	GTAC	3 cut(s)	172, 412, 458
RsaNI	GTAC	3 cut(s)	171, 411, 457
SatI	GCNGC	2 cut(s)	161, 259
SchI	GAGTC	3 cut(s)	59, 97, 232
SduI	GDGCHC	2 cut(s)	206, 357
SetI	ASST	6 cut(s)	73, 98, 158, 308, 398, 508
SfuI	TTCGAA	1 cut(s)	134
SgrAI	CRCCGGYG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
Sse9I	AATT	4 cut(s)	16, 224, 388, 442
SsiI	CCGC	3 cut(s)	74, 160, 259
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	3 cut(s)	57, 326, 352
TaiI	ACGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	134, 206, 383
TasI	AATT	4 cut(s)	16, 224, 388, 442
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	2 cut(s)	163, 261
TfiI	GAWTC	3 cut(s)	44, 267, 475
TscAI	CASTG	2 cut(s)	60, 255
TseFI	GTSAC	2 cut(s)	51, 541
Tsp45I	GTSAC	2 cut(s)	51, 541
TspDTI	ATGAA	2 cut(s)	236, 519
TspRI	CASTG	2 cut(s)	60, 255
XapI	RAATTY	2 cut(s)	16, 388
XmnI	GAANNNNTTC	1 cut(s)	325
ZraI	GACGTC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.