Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Forward (+)

75463265 .. 75464726

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG477800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAGACGTGGCAGCTGATGAATACAATGACATTTCCGGCGAGATGTTCGACTGGCTCCGGCGAGATGTTCGACGGGCTCGAACAAAGCGACGATGAAATTGAAATGGAGTCGTCTGTGGCTGATGCAGAGTCGGTGATTCGGGATGAGGAATTCAGGTGGCAGAGAGTGGAAAAGCTCTGCGAAGATGTGAAGCAGTTCGGCGAGGAAATGATTGACGATGGCTCTCTCGCCTCCATCTACGATTTCCGAATCGATAAATTTCAGCTAATGTTCTATTTCGTGACAGGAAATAGAACTGATGTAATGTGGAACCTGAATAAGCTGCAACACATCCAGAATTTAAATTATTCCTATTCTGGAGTATTCTGTAAAAAACTTCCTGAGATCCACATAAGGCTTTTCAATCAGGTTGTTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

140

Amino Acids

16.45

Weight (kDa)

4.58

Isoelectric Point (pI)

48.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	382
AcsI	RAATTY	3 cut(s)	152, 260, 340
AgsI	TTSAA	2 cut(s)	104, 406
AjiI	CACGTC	1 cut(s)	9
AluBI	AGCT	4 cut(s)	16, 178, 268, 325
AluI	AGCT	4 cut(s)	16, 178, 268, 325
AlwI	GGATC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	13, 325
ApoI	RAATTY	3 cut(s)	152, 260, 340
Asp700I	GAANNNNTTC	1 cut(s)	197
AsuHPI	GGTGA	1 cut(s)	148
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	25, 312
BccI	CCATC	2 cut(s)	215, 245
BisI	GCNGC	2 cut(s)	14, 326
BlsI	GCNGC	2 cut(s)	15, 327
BmgBI	CACGTC	1 cut(s)	9
BmiI	GGNNCC	2 cut(s)	58, 314
BmsI	GCATC	1 cut(s)	115
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	381
Bsa29I	ATCGAT	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	58
BseCI	ATCGAT	1 cut(s)	255
BseGI	GGATG	2 cut(s)	151, 333
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	2 cut(s)	25, 312
BshVI	ATCGAT	1 cut(s)	255
BsiSI	CCGG	2 cut(s)	38, 60
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	387
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	58, 314
BspPI	GGATC	1 cut(s)	382
BsrI	ACTGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	387
BstDEI	CTNAG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	151, 333
BstKTI	GATC	1 cut(s)	390
BstMBI	GATC	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	25, 312
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	387
Bsu15I	ATCGAT	1 cut(s)	255
BsuTUI	ATCGAT	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	151, 333
ClaI	ATCGAT	1 cut(s)	255
CviJI	RGCY	9 cut(s)	16, 57, 79, 122, 178, 225, 268, 325, 400
CviKI_1	RGCY	9 cut(s)	16, 57, 79, 122, 178, 225, 268, 325, 400
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	1 cut(s)	389
DpnII	GATC	1 cut(s)	387
DraI	TTTAAA	1 cut(s)	345
Eco24I	GRGCYC	1 cut(s)	81
EcoRI	GAATTC	1 cut(s)	152
EcoT38I	GRGCYC	1 cut(s)	81
FaiI	YATR	2 cut(s)	395, 421
Fnu4HI	GCNGC	2 cut(s)	14, 326
FokI	GGATG	2 cut(s)	158, 320
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	2 cut(s)	14, 326
GluI	GCNGC	2 cut(s)	14, 326
GsuI	CTGGAG	1 cut(s)	381
HapII	CCGG	2 cut(s)	38, 60
HinfI	GANTC	4 cut(s)	110, 131, 139, 252
HpaII	CCGG	2 cut(s)	38, 60
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	251
Hpy188III	TCNNGA	5 cut(s)	143, 283, 337, 360, 383
Hpy99I	CGWCG	2 cut(s)	77, 95
HpyCH4IV	ACGT	1 cut(s)	8
HpyCH4V	TGCA	3 cut(s)	128, 328, 419
HpyF3I	CTNAG	1 cut(s)	384
HpySE526I	ACGT	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	387
LmnI	GCTCC	1 cut(s)	62
Lsp1109I	GCAGC	2 cut(s)	25, 312
LweI	GCATC	1 cut(s)	115
MaeII	ACGT	1 cut(s)	8
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	389
MboI	GATC	1 cut(s)	387
MboII	GAAGA	2 cut(s)	16, 197
MflI	RGATCY	1 cut(s)	387
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	5 cut(s)	99, 152, 260, 340, 346
MlyI	GAGTC	2 cut(s)	119, 140
MnlI	CCTC	3 cut(s)	142, 199, 244
MroXI	GAANNNNTTC	1 cut(s)	197
MseI	TTAA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	2 cut(s)	38, 60
NdeII	GATC	1 cut(s)	387
NlaIV	GGNNCC	2 cut(s)	58, 314
NmuCI	GTSAC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 87
PdmI	GAANNNNTTC	1 cut(s)	197
PfeI	GAWTC	2 cut(s)	139, 252
PkrI	GCNGC	2 cut(s)	15, 327
PleI	GAGTC	2 cut(s)	118, 139
PpsI	GAGTC	2 cut(s)	118, 139
PspN4I	GGNNCC	2 cut(s)	58, 314
PsuI	RGATCY	1 cut(s)	387
PvuII	CAGCTG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	2 cut(s)	14, 326
Sau3AI	GATC	1 cut(s)	387
SchI	GAGTC	2 cut(s)	119, 140
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	8 cut(s)	11, 18, 161, 180, 270, 318, 327, 414
SfaNI	GCATC	1 cut(s)	115
SmiI	ATTTAAAT	1 cut(s)	345
Sse9I	AATT	5 cut(s)	99, 152, 260, 340, 346
SwaI	ATTTAAAT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	11
TaqI	TCGA	4 cut(s)	50, 72, 81, 255
TasI	AATT	5 cut(s)	99, 152, 260, 340, 346
TfiI	GAWTC	2 cut(s)	139, 252
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	2 cut(s)	13, 325
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	17, 35, 111
XapI	RAATTY	3 cut(s)	152, 260, 340
XmnI	GAANNNNTTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.