Rmu_sc0000375.1_g000004

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000375.1
Physical Location & Seq
Reverse (-)
17979 .. 20218
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000375.1_g000004.1.cds

Sequence Viewer

Length: 297 bp
atgaagacgtggcggctgatgaatacaatgacatttccggcaagatgttcgactggctccggcgagatgttcgacgggctcgaacaaagcgacgatgaaattgaaatggagtcgtctgtggctgatgcagagtcggtgattcgggatgaggaattcaggtggcagagagtggaaaagctctgcgaagatgtgaagcagttcggcgaggaaatgattgacgatggctctctcgcctccatctacgatttccgaatcgataaatttcaggttcgtcgaagccaaactataatttggtag

Protein Analysis

98

Amino Acids

11.53

Weight (kDa)

4.36

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 13
AcsI RAATTY 2 cut(s) 152, 260
AgsI TTSAA 1 cut(s) 104
AjiI CACGTC 1 cut(s) 9
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
ApoI RAATTY 2 cut(s) 152, 260
Asp700I GAANNNNTTC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 148
BanII GRGCYC 1 cut(s) 81
BbsI GAAGAC 1 cut(s) 11
BccI CCATC 2 cut(s) 215, 245
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmgBI CACGTC 1 cut(s) 9
BmiI GGNNCC 1 cut(s) 58
BmsI GCATC 1 cut(s) 115
BpiI GAAGAC 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 58
BseCI ATCGAT 1 cut(s) 255
BseGI GGATG 1 cut(s) 151
BseNI ACTGG 1 cut(s) 58
BshVI ATCGAT 1 cut(s) 255
BsiSI CCGG 2 cut(s) 38, 60
Bsp1286I GDGCHC 1 cut(s) 81
BspACI CCGC 1 cut(s) 13
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 58
BsrI ACTGG 1 cut(s) 58
BstF5I GGATG 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 11
Bsu15I ATCGAT 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 255
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 255
CviJI RGCY 7 cut(s) 16, 57, 79, 122, 178, 225, 279
CviKI_1 RGCY 7 cut(s) 16, 57, 79, 122, 178, 225, 279
Eco24I GRGCYC 1 cut(s) 81
EcoRI GAATTC 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 81
FaiI YATR 1 cut(s) 287
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 158
FriOI GRGCYC 1 cut(s) 81
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
HapII CCGG 2 cut(s) 38, 60
HinfI GANTC 4 cut(s) 110, 131, 139, 252
HpaII CCGG 2 cut(s) 38, 60
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 143
Hpy99I CGWCG 3 cut(s) 77, 95, 276
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 8
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 5 cut(s) 39, 51, 73, 142, 251
LweI GCATC 1 cut(s) 115
MaeII ACGT 1 cut(s) 8
MboII GAAGA 2 cut(s) 16, 197
MhlI GDGCHC 1 cut(s) 81
MluCI AATT 4 cut(s) 99, 152, 260, 288
MlyI GAGTC 2 cut(s) 119, 140
MnlI CCTC 3 cut(s) 142, 199, 244
MroXI GAANNNNTTC 1 cut(s) 197
MspI CCGG 2 cut(s) 38, 60
NlaIV GGNNCC 1 cut(s) 58
PcsI WCGNNNNNNNCGW 2 cut(s) 78, 87
PdmI GAANNNNTTC 1 cut(s) 197
PfeI GAWTC 2 cut(s) 139, 252
PkrI GCNGC 1 cut(s) 15
PleI GAGTC 2 cut(s) 118, 139
PpsI GAGTC 2 cut(s) 118, 139
PspN4I GGNNCC 1 cut(s) 58
SatI GCNGC 1 cut(s) 14
SchI GAGTC 2 cut(s) 119, 140
SduI GDGCHC 1 cut(s) 81
SetI ASST 4 cut(s) 11, 161, 180, 270
SfaNI GCATC 1 cut(s) 115
Sse9I AATT 4 cut(s) 99, 152, 260, 288
SsiI CCGC 1 cut(s) 13
TaiI ACGT 1 cut(s) 11
TaqI TCGA 5 cut(s) 50, 72, 81, 255, 274
TasI AATT 4 cut(s) 99, 152, 260, 288
TauI GCSGC 1 cut(s) 16
TfiI GAWTC 2 cut(s) 139, 252
TspDTI ATGAA 3 cut(s) 17, 35, 111
XapI RAATTY 2 cut(s) 152, 260
XmnI GAANNNNTTC 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.