Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Reverse (-)

3582169 .. 3582471

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG021700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGTTCGTCGGGCTCGAACAAAGCGACGATGGAATTGAAATGGAGTCGTCTGTGGCTGATGCAGAGTCGGCGATTCGGGACGAGGAATTCAGGTGGCAGAGAGTGGAGAAGCTCTGCGAAGATGTGAAGCAGTTCGGCGAGGAAATGATTGACGATGGCTCTCTCGCCTCTATCTATGATTTCCGAATCGATAAATTTCAAGTGCATTGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

71

Amino Acids

8.32

Weight (kDa)

4.13

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	86, 194
AgsI	TTSAA	2 cut(s)	38, 200
AluBI	AGCT	1 cut(s)	112
AluI	AGCT	1 cut(s)	112
ApoI	RAATTY	2 cut(s)	86, 194
Asp700I	GAANNNNTTC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	15
BccI	CCATC	2 cut(s)	23, 149
BmsI	GCATC	1 cut(s)	49
Bsa29I	ATCGAT	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	189
BshVI	ATCGAT	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	92
BsmFI	GGGAC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	15
BspDI	ATCGAT	1 cut(s)	189
BstMWI	GCNNNNNNNGC	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	189
BsuTUI	ATCGAT	1 cut(s)	189
ClaI	ATCGAT	1 cut(s)	189
CviJI	RGCY	4 cut(s)	13, 56, 112, 159
CviKI_1	RGCY	4 cut(s)	13, 56, 112, 159
Eco24I	GRGCYC	1 cut(s)	15
EcoRI	GAATTC	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	15
FaiI	YATR	1 cut(s)	177
FaqI	GGGAC	1 cut(s)	92
FriOI	GRGCYC	1 cut(s)	15
HinfI	GANTC	4 cut(s)	44, 65, 73, 186
Hpy188I	TCNGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	77
Hpy99I	CGWCG	2 cut(s)	11, 29
HpyCH4V	TGCA	2 cut(s)	62, 205
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
LpnPI	CCDG	1 cut(s)	76
LweI	GCATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	15
MluCI	AATT	3 cut(s)	33, 86, 194
MlyI	GAGTC	2 cut(s)	53, 74
MnlI	CCTC	3 cut(s)	76, 133, 178
MroXI	GAANNNNTTC	1 cut(s)	131
MwoI	GCNNNNNNNGC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 21
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	2 cut(s)	73, 186
PleI	GAGTC	2 cut(s)	52, 73
PpsI	GAGTC	2 cut(s)	52, 73
SchI	GAGTC	2 cut(s)	53, 74
SduI	GDGCHC	1 cut(s)	15
SetI	ASST	2 cut(s)	95, 114
SfaNI	GCATC	1 cut(s)	49
SgeI	CNNG	8 cut(s)	22, 26, 89, 94, 103, 151, 176, 212
Sse9I	AATT	3 cut(s)	33, 86, 194
TaqI	TCGA	2 cut(s)	15, 189
TasI	AATT	3 cut(s)	33, 86, 194
TfiI	GAWTC	2 cut(s)	73, 186
XapI	RAATTY	2 cut(s)	86, 194
XmnI	GAANNNNTTC	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.