Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001619.1

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Reverse (-)

24031 .. 27979

Gene Structure 3949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001619.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgttagacgggctcgaacaaagcgacgatgaaattgaaatggaggactccatggccggtgcagagccgccggcgattagcaacgaggagttcaggtggaagagagtggagaagctttgcgaagatgtgaaacagttcggcgaggaaatgaatggcgacgtagttgtgactgcgccgacgagtagcggaaagactttgatagcagaagctgctgctgtagcaacagtagccaagggaagaagattgttctacacaacttcgcttaaggccttattgaatcagaagtttcgcgaatttcgtgaaacattcggtgaaaataatgttggtcttctcacgggagattcggcagtaaacgaagatgctcaggtttttattatgaccacagagattttgcgcaacatgttgtatcagaggtacattgattatgaatttatgcagcaagcatggggccagcttgttgtgatctactcacgaatattagagaatccgtgccaacaactggatcgatatttaaacagttttaaggagttagctggaagtcggcctctctcagaattgagaactgctgaagaagctgttgttgctgcagcagcagcaagtgccacttcagaggatggtgtacaagcaaacgggatgaaggaaacgaggggaagaagaagggatgatttgtatctggataatgaaatgaccgaaatacccatctttgccttagagatggggcccacaggagctgacatggcatgcgatgtcagcaagttaatagctacagttgacggaggaatgacagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

263

Amino Acids

29.2

Weight (kDa)

4.45

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	395
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccII	CGCG	1 cut(s)	291
AciI	CCGC	2 cut(s)	68, 186
AclWI	GGATC	1 cut(s)	510
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	2 cut(s)	293, 428
AcuI	CTGAAG	2 cut(s)	588, 591
AfaI	GTAC	2 cut(s)	416, 621
AfiI	CCNNNNNNNGG	1 cut(s)	499
AflII	CTTAAG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	2 cut(s)	38, 277
AjuI	GAANNNNNNNTTGG	2 cut(s)	306, 338
AluBI	AGCT	7 cut(s)	115, 209, 454, 533, 575, 731, 764
AluI	AGCT	7 cut(s)	115, 209, 454, 533, 575, 731, 764
AlwI	GGATC	1 cut(s)	510
AlwNI	CAGNNNCTG	2 cut(s)	209, 731
AoxI	GGCC	5 cut(s)	54, 267, 448, 542, 719
ApaI	GGGCCC	1 cut(s)	723
ApeKI	GCWGC	7 cut(s)	209, 212, 436, 584, 587, 590, 593
ApoI	RAATTY	2 cut(s)	293, 428
Asp700I	GAANNNNTTC	1 cut(s)	134
AspLEI	GCGC	2 cut(s)	175, 396
AspS9I	GGNCC	3 cut(s)	448, 719, 720
AsuHPI	GGTGA	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	723
BanII	GRGCYC	2 cut(s)	15, 723
BbsI	GAAGAC	1 cut(s)	320
BbvI	GCAGC	7 cut(s)	196, 199, 448, 571, 599, 602, 605
BccI	CCATC	3 cut(s)	608, 707, 709
BfmI	CTRYAG	3 cut(s)	216, 585, 765
BfrI	CTTAAG	1 cut(s)	263
BisI	GCNGC	8 cut(s)	68, 210, 213, 437, 585, 588, 591, 594
BlsI	GCNGC	8 cut(s)	69, 211, 214, 438, 586, 589, 592, 595
BmgT120I	GGNCC	3 cut(s)	448, 719, 720
BmiI	GGNNCC	3 cut(s)	449, 720, 721
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	505
BsaBI	GATNNNNATC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	51, 231
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	499
Bse118I	RCCGGY	2 cut(s)	56, 70
Bse1I	ACTGG	1 cut(s)	504
Bse8I	GATNNNNATC	1 cut(s)	669
BseCI	ATCGAT	1 cut(s)	505
BseDI	CCNNGG	2 cut(s)	51, 231
BseGI	GGATG	3 cut(s)	619, 639, 667
BseJI	GATNNNNATC	1 cut(s)	669
BseLI	CCNNNNNNNGG	1 cut(s)	499
BseMII	CTCAG	2 cut(s)	377, 564
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	723
BseXI	GCAGC	7 cut(s)	196, 199, 448, 571, 599, 602, 605
BsgI	GTGCAG	1 cut(s)	81
Bsh1236I	CGCG	1 cut(s)	291
BshFI	GGCC	5 cut(s)	56, 269, 450, 544, 721
BshVI	ATCGAT	1 cut(s)	505
BsiSI	CCGG	2 cut(s)	57, 71
BslI	CCNNNNNNNGG	1 cut(s)	499
BsnI	GGCC	5 cut(s)	56, 269, 450, 544, 721
Bsp120I	GGGCCC	1 cut(s)	719
Bsp1286I	GDGCHC	2 cut(s)	15, 723
Bsp1407I	TGTACA	1 cut(s)	619
Bsp143I	GATC	2 cut(s)	462, 502
Bsp19I	CCATGG	1 cut(s)	51
Bsp68I	TCGCGA	1 cut(s)	291
BspACI	CCGC	2 cut(s)	68, 186
BspANI	GGCC	5 cut(s)	56, 269, 450, 544, 721
BspCNI	CTCAG	2 cut(s)	376, 563
BspDI	ATCGAT	1 cut(s)	505
BspFNI	CGCG	1 cut(s)	291
BspLI	GGNNCC	3 cut(s)	449, 720, 721
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	510
BspTI	CTTAAG	1 cut(s)	263
BsrFI	RCCGGY	2 cut(s)	56, 70
BsrGI	TGTACA	1 cut(s)	619
BsrI	ACTGG	1 cut(s)	504
BssAI	RCCGGY	2 cut(s)	56, 70
BssECI	CCNNGG	2 cut(s)	51, 231
BssMI	GATC	2 cut(s)	462, 502
BssT1I	CCWWGG	2 cut(s)	51, 231
Bst4CI	ACNGT	4 cut(s)	135, 226, 518, 769
Bst6I	CTCTTC	1 cut(s)	95
BstAFI	CTTAAG	1 cut(s)	263
BstAPI	GCANNNNNTGC	2 cut(s)	209, 599
BstAUI	TGTACA	1 cut(s)	619
BstC8I	GCNNGC	4 cut(s)	72, 441, 452, 742
BstDEI	CTNAG	3 cut(s)	363, 550, 709
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	619, 639, 667
BstFNI	CGCG	1 cut(s)	291
BstHHI	GCGC	2 cut(s)	175, 396
BstKTI	GATC	2 cut(s)	465, 505
BstMBI	GATC	2 cut(s)	462, 502
BstNSI	RCATGY	2 cut(s)	403, 744
BstSFI	CTRYAG	3 cut(s)	216, 585, 765
BstSLI	GKGCMC	1 cut(s)	723
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	7 cut(s)	196, 199, 448, 571, 599, 602, 605
BstV2I	GAAGAC	1 cut(s)	320
Bsu15I	ATCGAT	1 cut(s)	505
BsuRI	GGCC	5 cut(s)	56, 269, 450, 544, 721
BsuTUI	ATCGAT	1 cut(s)	505
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	1 cut(s)	759
BtsCI	GGATG	3 cut(s)	619, 639, 667
BtuMI	TCGCGA	1 cut(s)	291
Cac8I	GCNNGC	4 cut(s)	72, 441, 452, 742
CaiI	CAGNNNCTG	2 cut(s)	209, 731
CfoI	GCGC	2 cut(s)	175, 396
Cfr10I	RCCGGY	2 cut(s)	56, 70
Cfr13I	GGNCC	3 cut(s)	448, 719, 720
ClaI	ATCGAT	1 cut(s)	505
Csp6I	GTAC	2 cut(s)	415, 620
CviAII	CATG	5 cut(s)	52, 400, 444, 736, 741
CviQI	GTAC	2 cut(s)	415, 620
DdeI	CTNAG	3 cut(s)	363, 550, 709
DpnI	GATC	2 cut(s)	464, 504
DpnII	GATC	2 cut(s)	462, 502
DraI	TTTAAA	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco130I	CCWWGG	2 cut(s)	51, 231
Eco147I	AGGCCT	1 cut(s)	269
Eco24I	GRGCYC	2 cut(s)	15, 723
Eco57I	CTGAAG	2 cut(s)	588, 591
EcoO109I	RGGNCCY	1 cut(s)	719
EcoT14I	CCWWGG	2 cut(s)	51, 231
EcoT38I	GRGCYC	2 cut(s)	15, 723
ErhI	CCWWGG	2 cut(s)	51, 231
FaeI	CATG	5 cut(s)	55, 403, 447, 739, 744
FaiI	YATR	8 cut(s)	53, 377, 401, 426, 434, 445, 737, 742
FalI	AAGNNNNNCTT	2 cut(s)	589, 621
FatI	CATG	5 cut(s)	51, 399, 443, 735, 740
Fnu4HI	GCNGC	8 cut(s)	68, 210, 213, 437, 585, 588, 591, 594
FokI	GGATG	3 cut(s)	626, 646, 674
FriOI	GRGCYC	2 cut(s)	15, 723
Fsp4HI	GCNGC	8 cut(s)	68, 210, 213, 437, 585, 588, 591, 594
FspI	TGCGCA	1 cut(s)	395
GlaI	GCGC	2 cut(s)	174, 395
GluI	GCNGC	8 cut(s)	68, 210, 213, 437, 585, 588, 591, 594
HaeIII	GGCC	5 cut(s)	56, 269, 450, 544, 721
HapII	CCGG	2 cut(s)	57, 71
HhaI	GCGC	2 cut(s)	175, 396
Hin1II	CATG	5 cut(s)	55, 403, 447, 739, 744
Hin6I	GCGC	2 cut(s)	173, 394
HinP1I	GCGC	2 cut(s)	173, 394
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	4 cut(s)	47, 277, 341, 484
HpaII	CCGG	2 cut(s)	57, 71
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	3 cut(s)	352, 620, 772
Hpy188I	TCNGA	4 cut(s)	282, 411, 553, 610
Hpy188III	TCNNGA	4 cut(s)	290, 299, 471, 674
Hpy8I	GTNNAC	3 cut(s)	352, 620, 772
Hpy99I	CGWCG	3 cut(s)	29, 161, 181
HpyAV	CCTTC	2 cut(s)	631, 651
HpyCH4III	ACNGT	4 cut(s)	135, 226, 518, 769
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	3 cut(s)	62, 436, 587
HpyF3I	CTNAG	3 cut(s)	363, 550, 709
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	5 cut(s)	55, 403, 447, 739, 744
HspAI	GCGC	2 cut(s)	173, 394
KroI	GCCGGC	1 cut(s)	70
KroNI	GCCGGC	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	462, 502
LmnI	GCTCC	1 cut(s)	728
LpnPI	CCDG	9 cut(s)	70, 79, 84, 350, 464, 485, 519, 659, 711
Lsp1109I	GCAGC	7 cut(s)	196, 199, 448, 571, 599, 602, 605
LweI	GCATC	1 cut(s)	349
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	464, 504
MboI	GATC	2 cut(s)	462, 502
MboII	GAAGA	9 cut(s)	112, 134, 249, 252, 320, 368, 581, 663, 666
MhlI	GDGCHC	2 cut(s)	15, 723
MluCI	AATT	4 cut(s)	33, 293, 428, 554
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	8 cut(s)	37, 79, 136, 405, 555, 604, 639, 770
MreI	CGCCGGCG	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	4 cut(s)	264, 512, 522, 758
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	2 cut(s)	57, 71
MvnI	CGCG	1 cut(s)	291
NaeI	GCCGGC	1 cut(s)	72
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	462, 502
NgoMIV	GCCGGC	1 cut(s)	70
NlaIII	CATG	5 cut(s)	55, 403, 447, 739, 744
NlaIV	GGNNCC	3 cut(s)	449, 720, 721
NmuCI	GTSAC	1 cut(s)	166
NruI	TCGCGA	1 cut(s)	291
NsbI	TGCGCA	1 cut(s)	395
NspI	RCATGY	2 cut(s)	403, 744
PaeI	GCATGC	1 cut(s)	744
PceI	AGGCCT	1 cut(s)	269
PciI	ACATGT	1 cut(s)	399
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 295
PdiI	GCCGGC	1 cut(s)	72
PdmI	GAANNNNTTC	1 cut(s)	134
PfeI	GAWTC	3 cut(s)	277, 341, 484
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	8 cut(s)	69, 211, 214, 438, 586, 589, 592, 595
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PscI	ACATGT	1 cut(s)	399
PspN4I	GGNNCC	3 cut(s)	449, 720, 721
PspOMI	GGGCCC	1 cut(s)	719
PspPI	GGNCC	3 cut(s)	448, 719, 720
PstI	CTGCAG	1 cut(s)	589
PstNI	CAGNNNCTG	2 cut(s)	209, 731
RruI	TCGCGA	1 cut(s)	291
RsaI	GTAC	2 cut(s)	416, 621
RsaNI	GTAC	2 cut(s)	415, 620
SaqAI	TTAA	4 cut(s)	264, 512, 522, 758
SatI	GCNGC	8 cut(s)	68, 210, 213, 437, 585, 588, 591, 594
Sau3AI	GATC	2 cut(s)	462, 502
Sau96I	GGNCC	3 cut(s)	448, 719, 720
SchI	GAGTC	1 cut(s)	41
SduI	GDGCHC	2 cut(s)	15, 723
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	3 cut(s)	216, 585, 765
SgrAI	CRCCGGYG	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SphI	GCATGC	1 cut(s)	744
Sse9I	AATT	4 cut(s)	33, 293, 428, 554
SseBI	AGGCCT	1 cut(s)	269
SsiI	CCGC	2 cut(s)	68, 186
SspI	AATATT	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	269
StyI	CCWWGG	2 cut(s)	51, 231
TaaI	ACNGT	4 cut(s)	135, 226, 518, 769
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	2 cut(s)	15, 505
TaqII	GACCGA	1 cut(s)	704
TasI	AATT	4 cut(s)	33, 293, 428, 554
TatI	WGTACW	1 cut(s)	619
TauI	GCSGC	1 cut(s)	70
TfiI	GAWTC	3 cut(s)	277, 341, 484
Tru1I	TTAA	4 cut(s)	264, 512, 522, 758
Tru9I	TTAA	4 cut(s)	264, 512, 522, 758
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	7 cut(s)	209, 212, 436, 584, 587, 590, 593
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	5 cut(s)	45, 164, 441, 650, 696
TspGWI	ACGGA	2 cut(s)	477, 789
Van91I	CCANNNNNTGG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	263
XapI	RAATTY	2 cut(s)	293, 428
XceI	RCATGY	2 cut(s)	403, 744
XmnI	GAANNNNTTC	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.