Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001616

Physical Location & Seq

Genomic Coordinates Forward (+)

33828236 .. 33830134

Gene Structure 1899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G015160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAAGATTTTATCGAATTTGGCCGGGAAAACAAAGTTGGCCCAATTGAAATCCCAAAACCTACGATGAAGACGTGGCGGCTGATGAATACAATGACATTTCCGGCGAGATGTTCGACTGGCTCCTGCGAGATGTTCGACGGGCTCGAACAAAGCGACGATGAAATTGAAATGGAGTCGTCTGTGGCTGATGCAGAGTTGGTGATTCGGGATGAGGAATTCAGGTGGCAGAGAGTGGAAAAGCTCTGCGAAGATGTGAAGCAGTTCGGCGAGGAAATGATTGAAGATGGCTCTCTCGCCTCCATCTACGATTTCCGAATCGATAAATTTCAGTTCTGGAGGTGTAGTCTTGGCTTCTCAAGATGGGAAGATTGTGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000373 GO:0000375 GO:0000377 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010494 GO:0010496 GO:0010497 GO:0010501 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016071 GO:0016441 GO:0016458 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035770 GO:0036464 GO:0040029 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD DSHCT Helicase_C

Protein Analysis

126

Amino Acids

14.85

Weight (kDa)

4.43

Isoelectric Point (pI)

58.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001616)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102891
rosa_laevigata	RLG00000003325 RLG00000010663 RLG00000014743 RLG00000021608 RLG00000028731
rosa_multiflora	Rmu_co8212272.1_g000001 Rmu_co8257291.1_g000001 Rmu_sc0000375.1_g000004 Rmu_sc0001619.1_g000004 Rmu_sc0002160.1_g000017 Rmu_sc0002960.1_g000003 Rmu_sc0004031.1_g000010 Rmu_sc0011657.1_g000008 Rmu_sc0014046.1_g000004
rosa_roxburghii	Rroxscaffold_1G00024170 Rroxscaffold_2G00149140 Rroxscaffold_5G00382470
rosa_rugosa	Rorug02G0226400 Rorug02G0226500 Rorug04G0046600 Rorug05G0408800 Rorug05G0408900 Rorug06G0089500 Rorug06G0089600 Rorug06G0089700.1 Rorug06G0089800
rosa_samantha	Rh1BG120900 Rh2AG219500 Rh2AG390100 Rh2BG229500 Rh2CG165000 Rh2DG225900 Rh2DG381600 Rh3BG369300 Rh3CG331600 Rh3DG328600 Rh4AG016000 Rh4AG058100 Rh4BG056900 Rh4CG112600 Rh4CG219300 Rh4CG219400 Rh4DG021700 Rh5DG477800 Rh5DG495600 Rh7AG221500 Rh7AG324600 Rh7CG341400
rosa_wichuraiana	Rw1G015160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	79
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	3 cut(s)	17, 218, 326
AgsI	TTSAA	3 cut(s)	50, 170, 284
AjiI	CACGTC	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	2 cut(s)	21, 53
AluBI	AGCT	1 cut(s)	244
AluI	AGCT	1 cut(s)	244
AoxI	GGCC	2 cut(s)	22, 40
ApoI	RAATTY	3 cut(s)	17, 218, 326
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	77
BccI	CCATC	3 cut(s)	281, 311, 357
BcnI	CCSGG	1 cut(s)	26
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	77
BpmI	CTGGAG	1 cut(s)	358
BpuEI	CTTGAG	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bse1I	ACTGG	1 cut(s)	124
BseCI	ATCGAT	1 cut(s)	321
BseGI	GGATG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	24, 42
BshVI	ATCGAT	1 cut(s)	321
BsiSI	CCGG	2 cut(s)	25, 104
BsnI	GGCC	2 cut(s)	24, 42
Bsp1286I	GDGCHC	1 cut(s)	147
BspACI	CCGC	1 cut(s)	79
BspANI	GGCC	2 cut(s)	24, 42
BspDI	ATCGAT	1 cut(s)	321
BspLI	GGNNCC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	24
BstV2I	GAAGAC	1 cut(s)	77
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	24, 42
BsuTUI	ATCGAT	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	75
BtsCI	GGATG	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	41
ClaI	ATCGAT	1 cut(s)	321
CviJI	RGCY	9 cut(s)	24, 42, 82, 123, 145, 188, 244, 291, 354
CviKI_1	RGCY	9 cut(s)	24, 42, 82, 123, 145, 188, 244, 291, 354
EaeI	YGGCCR	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	147
EcoRI	GAATTC	1 cut(s)	218
EcoT38I	GRGCYC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	224
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	80
GsuI	CTGGAG	1 cut(s)	358
HaeIII	GGCC	2 cut(s)	24, 42
HapII	CCGG	2 cut(s)	25, 104
HinfI	GANTC	3 cut(s)	176, 205, 318
HpaII	CCGG	2 cut(s)	25, 104
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	3 cut(s)	209, 337, 360
Hpy99I	CGWCG	2 cut(s)	143, 161
HpyCH4IV	ACGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	194
HpySE526I	ACGT	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	6 cut(s)	38, 105, 117, 139, 208, 322
LweI	GCATC	1 cut(s)	181
MaeII	ACGT	1 cut(s)	74
MboII	GAAGA	4 cut(s)	82, 263, 296, 380
MfeI	CAATTG	1 cut(s)	45
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	5 cut(s)	17, 45, 165, 218, 326
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	208, 265, 310, 333
MroXI	GAANNNNTTC	1 cut(s)	263
MspI	CCGG	2 cut(s)	25, 104
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	45
NciI	CCSGG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	3 cut(s)	71, 144, 153
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	2 cut(s)	205, 318
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	41
SatI	GCNGC	1 cut(s)	80
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	5 cut(s)	64, 77, 227, 246, 344
SfaNI	GCATC	1 cut(s)	181
SmlI	CTYRAG	1 cut(s)	358
SmoI	CTYRAG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	17, 45, 165, 218, 326
SsiI	CCGC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	24
TaiI	ACGT	1 cut(s)	77
TaqI	TCGA	5 cut(s)	15, 116, 138, 147, 321
TasI	AATT	5 cut(s)	17, 45, 165, 218, 326
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	205, 318
TspDTI	ATGAA	4 cut(s)	17, 83, 101, 177
XapI	RAATTY	3 cut(s)	17, 218, 326
XmnI	GAANNNNTTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.