Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000101.1

Orthogroup ID

OG0001698

Physical Location & Seq

Genomic Coordinates Reverse (-)

74904 .. 75915

Gene Structure 1012 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgactgcaaacaatgatgctcaagttagagtttttgacgttgaaaagttcgcttgcgtcaaccgcttctccttggagtggtctgtaaataacacttctgttagtcccgatggtaagctgctcgcagtacttggtgatggtgcagactgtttgatagctgatgctcagtctggaaaagctgtcgggggcctgaaagggcacttagactattgcttttcctcagcttggcacccggatgggcgaatcttggctactgggaaccaagacactacttgcaggttatgggacataaggaacctgtcagagtccctagtcgtgttgaagggaagaatgggagcaataagggctataaaattcacctctgatggtcgttttatggccatggctgagccggcagactttgttgacatcattgatacccagtccggatatgcaaaggaacaagagattgatctgtttggtgagattgccggaatatccttcagccccgactctgaagcattgtttattggggttgcacctgtcagagtccctaactttgttgacatcattgatacccagtccggatatgcaaaggaacaagagattgatctgtttggtgagattgccggaatatccttcagccccgactctgaagctttgtttattggggttgctgatcgcacatatggtagtgtattggagttcaataagaggcactataatacctatgaagaaatagtcttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

242

Amino Acids

26.45

Weight (kDa)

4.48

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	1 - 130	2.7e-15	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR36-Utp21_2nd	PF25168	1 - 129	2.1e-11	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5	PF25175	2 - 168	3.2e-19	WDR5 beta-propeller domain
WD40_Prp19	PF24814	2 - 218	1e-17	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	3 - 168	1.4e-25	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	3 - 221	2e-11	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	4 - 129	1.5e-07	G protein beta WD-40 repeat protein
Beta-prop_WDR3_2nd	PF25172	5 - 103	7.3e-07	WDR3 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	7 - 172	3.9e-13	WDR3 first beta-propeller domain
Beta-prop_IFT122_1st	PF23381	25 - 145	3e-06	IFT122 first beta-propeller
WDR55	PF24796	28 - 143	5.2e-07	WDR55
WD40	PF00400	59 - 96	1.1e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G36070 AT1G78070 AT1G78070 AT1G78070
fragaria_vesca	FvH4_5g37830
malus_domestica	MD08G1180000.v1.1 MD15G1365300.v1.1
prunus_persica	Prupe.1G513500_v2.0.a1
pyrus_communis	pycom08g15410 pycom15g32770
rosa_chinensis	RchiOBHm_Chr7g0239721 RchiOBHm_Chr7g0239731 RchiOBHm_Chr7g0239761 RchiOBHm_Chr7g0239781 RchiOBHm_Chr7g0239801
rosa_laevigata	RLG00000000730 RLG00000000732 RLG00000029177
rosa_multiflora	Rmu_sc0000063.1_g000032 Rmu_sc0000063.1_g000033 Rmu_sc0000063.1_g000038 Rmu_sc0000101.1_g000005 Rmu_sc0000101.1_g000014 Rmu_sc0000101.1_g000017 Rmu_sc0000101.1_g000020 Rmu_sc0003622.1_g000011 Rmu_sc0004440.1_g000004 Rmu_sc0007193.1_g000002
rosa_roxburghii	Rroxscaffold_3G00220800 Rroxscaffold_3G00220820
rosa_rugosa	Rorug07G0328900.1 Rorug07G0329400
rosa_samantha	Rh7AG483100 Rh7AG483200 Rh7AG483300 Rh7AG483500 Rh7CG500900 Rh7CG501100
rosa_wichuraiana	Rw7G040440 Rw7G040470 Rw7G040480 Rw7G040520 Rw7G040540 Rw7G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	228
AccIII	TCCGGA	2 cut(s)	425, 563
AciI	CCGC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	1 cut(s)	353
AcuI	CTGAAG	4 cut(s)	466, 516, 604, 654
AfaI	GTAC	1 cut(s)	129
AfiI	CCNNNNNNNGG	2 cut(s)	78, 225
AgsI	TTSAA	3 cut(s)	44, 322, 688
AluBI	AGCT	5 cut(s)	118, 158, 179, 224, 638
AluI	AGCT	5 cut(s)	118, 158, 179, 224, 638
Aor13HI	TCCGGA	2 cut(s)	425, 563
AoxI	GGCC	2 cut(s)	187, 378
ApeKI	GCWGC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	353
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	4 cut(s)	146, 349, 473, 611
BaeGI	GKGCMC	1 cut(s)	201
BalI	TGGCCA	1 cut(s)	380
BanI	GGYRCC	1 cut(s)	228
BbsI	GAAGAC	1 cut(s)	715
BbvCI	CCTCAGC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	4 cut(s)	104, 131, 230, 359
BcnI	CCSGG	1 cut(s)	233
BfaI	CTAG	2 cut(s)	311, 727
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	119
BlpI	GCTNAGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	120
BmcAI	AGTACT	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	233
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	4 cut(s)	188, 230, 260, 296
BmrFI	CCNGG	1 cut(s)	233
BmrI	ACTGGG	3 cut(s)	264, 415, 553
BmsI	GCATC	2 cut(s)	7, 151
BmuI	ACTGGG	3 cut(s)	264, 415, 553
BpiI	GAAGAC	1 cut(s)	715
Bpu10I	CCTNAGC	1 cut(s)	220
Bpu1102I	GCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	233
BsaJI	CCNNGG	2 cut(s)	72, 381
BsaWI	WCCGGW	2 cut(s)	425, 563
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 225
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	3 cut(s)	259, 421, 559
BseAI	TCCGGA	2 cut(s)	425, 563
BseDI	CCNNGG	2 cut(s)	72, 381
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	78, 225
BseMII	CTCAG	3 cut(s)	179, 234, 378
BseNI	ACTGG	3 cut(s)	259, 421, 559
BseSI	GKGCMC	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	105
BsgI	GTGCAG	1 cut(s)	162
BshFI	GGCC	2 cut(s)	189, 380
BshNI	GGYRCC	1 cut(s)	228
BsiSI	CCGG	6 cut(s)	233, 392, 426, 471, 564, 609
BslFI	GGGAC	4 cut(s)	90, 292, 299, 515
BslI	CCNNNNNNNGG	2 cut(s)	78, 225
BsmFI	GGGAC	4 cut(s)	90, 292, 299, 515
BsnI	GGCC	2 cut(s)	189, 380
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp13I	TCCGGA	2 cut(s)	425, 563
Bsp143I	GATC	3 cut(s)	451, 589, 658
Bsp1720I	GCTNAGC	1 cut(s)	387
Bsp19I	CCATGG	1 cut(s)	381
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	189, 380
BspCNI	CTCAG	3 cut(s)	178, 233, 379
BspEI	TCCGGA	2 cut(s)	425, 563
BspLI	GGNNCC	4 cut(s)	188, 230, 260, 296
BspMI	ACCTGC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	3 cut(s)	259, 421, 559
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	72, 381
BssMI	GATC	3 cut(s)	451, 589, 658
BssT1I	CCWWGG	2 cut(s)	72, 381
Bst4CI	ACNGT	1 cut(s)	149
BstC8I	GCNNGC	3 cut(s)	55, 123, 393
BstDEI	CTNAG	4 cut(s)	165, 202, 220, 387
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	3 cut(s)	454, 592, 661
BstMBI	GATC	3 cut(s)	451, 589, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	63, 344, 392
BstSCI	CCNGG	1 cut(s)	231
BstSLI	GKGCMC	1 cut(s)	201
BstV1I	GCAGC	1 cut(s)	105
BstV2I	GAAGAC	1 cut(s)	715
BsuRI	GGCC	2 cut(s)	189, 380
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	241
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	3 cut(s)	55, 123, 393
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	187
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	128
CviAII	CATG	1 cut(s)	382
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	4 cut(s)	165, 202, 220, 387
DpnI	GATC	3 cut(s)	453, 591, 660
DpnII	GATC	3 cut(s)	451, 589, 658
EaeI	YGGCCR	1 cut(s)	378
Eco130I	CCWWGG	2 cut(s)	72, 381
Eco57I	CTGAAG	4 cut(s)	466, 516, 604, 654
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT14I	CCWWGG	2 cut(s)	72, 381
ErhI	CCWWGG	2 cut(s)	72, 381
FaeI	CATG	1 cut(s)	385
FaqI	GGGAC	4 cut(s)	90, 292, 299, 515
FatI	CATG	1 cut(s)	381
FauNDI	CATATG	1 cut(s)	667
Fnu4HI	GCNGC	1 cut(s)	119
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	119
FspBI	CTAG	2 cut(s)	311, 727
GluI	GCNGC	1 cut(s)	119
HaeIII	GGCC	2 cut(s)	189, 380
HapII	CCGG	6 cut(s)	233, 392, 426, 471, 564, 609
HgaI	GACGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	385
HincII	GTYRAC	3 cut(s)	61, 406, 544
HindII	GTYRAC	3 cut(s)	61, 406, 544
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	5 cut(s)	243, 305, 491, 528, 629
HpaII	CCGG	6 cut(s)	233, 392, 426, 471, 564, 609
HphI	GGTGA	4 cut(s)	146, 349, 473, 611
Hpy166II	GTNNAC	3 cut(s)	61, 406, 544
Hpy188I	TCNGA	5 cut(s)	304, 364, 496, 527, 634
Hpy188III	TCNNGA	4 cut(s)	107, 171, 426, 564
Hpy8I	GTNNAC	3 cut(s)	61, 406, 544
HpyAV	CCTTC	3 cut(s)	316, 490, 628
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	8, 143, 276, 434, 518, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	63, 344, 392
HpyF3I	CTNAG	4 cut(s)	165, 202, 220, 387
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	385
Kpn2I	TCCGGA	2 cut(s)	425, 563
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Kzo9I	GATC	3 cut(s)	451, 589, 658
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	2 cut(s)	7, 151
MaeI	CTAG	2 cut(s)	311, 727
MaeII	ACGT	1 cut(s)	39
MalI	GATC	3 cut(s)	453, 591, 660
MboI	GATC	3 cut(s)	451, 589, 658
MboII	GAAGA	3 cut(s)	339, 715, 725
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	380
MluCI	AATT	1 cut(s)	353
MluNI	TGGCCA	1 cut(s)	380
MlyI	GAGTC	4 cut(s)	314, 485, 537, 623
MnlI	CCTC	3 cut(s)	229, 370, 687
Mox20I	TGGCCA	1 cut(s)	380
MroI	TCCGGA	2 cut(s)	425, 563
MroNI	GCCGGC	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	380
MslI	CAYNNNNRTG	1 cut(s)	234
Msp20I	TGGCCA	1 cut(s)	380
MspI	CCGG	6 cut(s)	233, 392, 426, 471, 564, 609
MspR9I	CCNGG	1 cut(s)	233
MwoI	GCNNNNNNNGC	3 cut(s)	63, 344, 392
NaeI	GCCGGC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	381
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	3 cut(s)	451, 589, 658
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	385
NlaIV	GGNNCC	4 cut(s)	188, 230, 260, 296
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	120
PleI	GAGTC	4 cut(s)	313, 485, 536, 623
PpsI	GAGTC	4 cut(s)	313, 485, 536, 623
PspN4I	GGNNCC	4 cut(s)	188, 230, 260, 296
PspPI	GGNCC	1 cut(s)	187
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	234
SatI	GCNGC	1 cut(s)	119
Sau3AI	GATC	3 cut(s)	451, 589, 658
Sau96I	GGNCC	1 cut(s)	187
ScaI	AGTACT	1 cut(s)	129
SchI	GAGTC	4 cut(s)	314, 485, 537, 623
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	7, 151
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	1 cut(s)	353
SsiI	CCGC	1 cut(s)	64
SspMI	CTAG	2 cut(s)	311, 727
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	72, 381
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	42
TasI	AATT	1 cut(s)	353
TatI	WGTACW	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	243
TseI	GCWGC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	726
XapI	RAATTY	1 cut(s)	353
XspI	CTAG	2 cut(s)	311, 727
ZrmI	AGTACT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.