Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000258.1

Orthogroup ID

OG0002552

Physical Location & Seq

Genomic Coordinates Forward (+)

164005 .. 165185

Gene Structure 1181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

atgttggagcatctcgaggatctgaaaacccaaactcaagcttggatcttcatctccgacctccataggcgtcggcgactcacaggtggtctgaccgggccgagcaacgatgacggggaaggcgaagccgaagaagcatgtggcgatggagatccagaattggagctcgttcacatggaatctgcagaaatgaacggcggtggagaggggctcgtggctccggcgacgtctggagaggcgatggagccgctcgactggaagttttctcaggtttttggagaacagaccgcctgcgaggaagttcaggaaggtactcttctcgattctttcctttcggctggtgagctaactgctgccaaaattaataacctgatgttcattgtgggaaatccccgccagttcaagatccctgactggtttctcaacgcaaagaaggattacaaggatggtaaaaattcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

153

Amino Acids

16.79

Weight (kDa)

4.4

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	99 - 152	5.9e-07	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002552)

Species	Orthologous Gene IDs
malus_domestica	MD14G1115000.v1.1
rosa_chinensis	RchiOBHm_Chr1g0330401 RchiOBHm_Chr2g0102551 RchiOBHm_Chr2g0117801 RchiOBHm_Chr4g0389801 RchiOBHm_Chr5g0034931 RchiOBHm_Chr7g0225541
rosa_laevigata	RLG00000010557 RLG00000010558 RLG00000014391
rosa_multiflora	Rmu_co8427689.1_g000001 Rmu_sc0000039.1_g000004 Rmu_sc0000258.1_g000038 Rmu_sc0000706.1_g000005 Rmu_sc0009984.1_g000006 Rmu_sc0017370.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028750 Rroxscaffold_1G00028760 Rroxscaffold_6G00396980 Rroxscaffold_7G00210170
rosa_rugosa	Rorug02G0238300 Rorug02G0347500 Rorug05G0221100 Rorug07G0270200
rosa_samantha	Rh1DG111200 Rh3BG298700 Rh3CG233300 Rh4AG022100 Rh4AG059200 Rh4AG116300 Rh4CG252100 Rh4CG252200 Rh4DG118500 Rh5DG477900 Rh6AG019300 Rh6BG057600 Rh6BG074100 Rh6BG215700 Rh6BG237700 Rh6CG386400
rosa_wichuraiana	Rw1G015170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	230
AccBSI	CCGCTC	1 cut(s)	250
AciI	CCGC	4 cut(s)	198, 248, 288, 394
AclWI	GGATC	4 cut(s)	27, 53, 146, 400
AcsI	RAATTY	1 cut(s)	454
AcyI	GRCGYC	2 cut(s)	70, 227
AfaI	GTAC	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	403
AluBI	AGCT	3 cut(s)	41, 166, 346
AluI	AGCT	3 cut(s)	41, 166, 346
Alw21I	GWGCWC	1 cut(s)	168
AlwI	GGATC	4 cut(s)	27, 53, 146, 400
Ama87I	CYCGRG	1 cut(s)	14
AoxI	GGCC	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	1 cut(s)	454
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	1 cut(s)	98
AsuC2I	CCSGG	1 cut(s)	97
AsuHPI	GGTGA	1 cut(s)	353
AvaI	CYCGRG	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	168, 213
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	3 cut(s)	140, 235, 440
BceAI	ACGGC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	97
BfmI	CTRYAG	1 cut(s)	183
BisI	GCNGC	2 cut(s)	248, 354
BlsI	GCNGC	2 cut(s)	249, 355
Bme1390I	CCNGG	1 cut(s)	97
BmeT110I	CYCGRG	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	98
BmiI	GGNNCC	2 cut(s)	219, 246
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	19
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
BpmI	CTGGAG	1 cut(s)	252
BpuEI	CTTGAG	1 cut(s)	21
BpuMI	CCSGG	1 cut(s)	97
BsaBI	GATNNNNATC	2 cut(s)	50, 150
BsaHI	GRCGYC	2 cut(s)	70, 227
Bse1I	ACTGG	3 cut(s)	260, 397, 419
Bse8I	GATNNNNATC	2 cut(s)	50, 150
BseGI	GGATG	1 cut(s)	451
BseJI	GATNNNNATC	2 cut(s)	50, 150
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	3 cut(s)	260, 397, 419
BseXI	GCAGC	1 cut(s)	340
BshFI	GGCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	14
BsiSI	CCGG	2 cut(s)	96, 221
BsnI	GGCC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	168, 213
Bsp143I	GATC	4 cut(s)	19, 45, 151, 405
BspACI	CCGC	4 cut(s)	198, 248, 288, 394
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	219, 246
BspMAI	CTGCAG	1 cut(s)	187
BspPI	GGATC	4 cut(s)	27, 53, 146, 400
BsrBI	CCGCTC	1 cut(s)	250
BsrI	ACTGG	3 cut(s)	260, 397, 419
BssMI	GATC	4 cut(s)	19, 45, 151, 405
BssNI	GRCGYC	2 cut(s)	70, 227
BssSI	CACGAG	1 cut(s)	212
Bst2BI	CACGAG	1 cut(s)	212
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	2 cut(s)	70, 227
BstC8I	GCNNGC	1 cut(s)	292
BstDEI	CTNAG	2 cut(s)	267, 459
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	4 cut(s)	22, 48, 154, 408
BstMBI	GATC	4 cut(s)	19, 45, 151, 405
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	95
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	4 cut(s)	19, 45, 151, 405
BstYI	RGATCY	4 cut(s)	19, 45, 151, 405
BsuRI	GGCC	1 cut(s)	100
BtgZI	GCGATG	2 cut(s)	159, 254
BtsCI	GGATG	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	98
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	312
CviAII	CATG	2 cut(s)	138, 175
CviJI	RGCY	9 cut(s)	41, 100, 128, 166, 211, 218, 247, 338, 346
CviKI_1	RGCY	9 cut(s)	41, 100, 128, 166, 211, 218, 247, 338, 346
CviQI	GTAC	1 cut(s)	312
DdeI	CTNAG	2 cut(s)	267, 459
DpnI	GATC	4 cut(s)	21, 47, 153, 407
DpnII	GATC	4 cut(s)	19, 45, 151, 405
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	2 cut(s)	168, 213
Eco53kI	GAGCTC	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	14
EcoICRI	GAGCTC	1 cut(s)	166
EcoT38I	GRGCYC	2 cut(s)	168, 213
FaeI	CATG	2 cut(s)	141, 178
FaiI	YATR	3 cut(s)	66, 139, 176
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	2 cut(s)	137, 174
FauI	CCCGC	1 cut(s)	401
Fnu4HI	GCNGC	2 cut(s)	248, 354
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	2 cut(s)	168, 213
Fsp4HI	GCNGC	2 cut(s)	248, 354
GluI	GCNGC	2 cut(s)	248, 354
GsuI	CTGGAG	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	2 cut(s)	96, 221
HgaI	GACGC	1 cut(s)	59
Hin1I	GRCGYC	2 cut(s)	70, 227
Hin1II	CATG	2 cut(s)	141, 178
HindIII	AAGCTT	1 cut(s)	39
HinfI	GANTC	3 cut(s)	78, 179, 323
HpaII	CCGG	2 cut(s)	96, 221
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	24, 58, 93
Hpy188III	TCNNGA	6 cut(s)	14, 155, 231, 305, 320, 403
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	2 cut(s)	75, 229
HpyAV	CCTTC	3 cut(s)	113, 302, 427
HpyCH4IV	ACGT	1 cut(s)	227
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	267, 459
HpySE526I	ACGT	1 cut(s)	227
Hsp92I	GRCGYC	2 cut(s)	70, 227
Hsp92II	CATG	2 cut(s)	141, 178
Kzo9I	GATC	4 cut(s)	19, 45, 151, 405
LmnI	GCTCC	4 cut(s)	7, 163, 223, 244
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	19
MaeII	ACGT	1 cut(s)	227
MalI	GATC	4 cut(s)	21, 47, 153, 407
MbiI	CCGCTC	1 cut(s)	250
MboI	GATC	4 cut(s)	19, 45, 151, 405
MboII	GAAGA	3 cut(s)	40, 143, 308
MflI	RGATCY	4 cut(s)	19, 45, 151, 405
MhlI	GDGCHC	2 cut(s)	168, 213
MluCI	AATT	3 cut(s)	158, 360, 454
MlyI	GAGTC	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	5 cut(s)	10, 71, 199, 229, 289
MseI	TTAA	1 cut(s)	363
MspI	CCGG	2 cut(s)	96, 221
MspR9I	CCNGG	1 cut(s)	97
MwoI	GCNNNNNNNGC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	97
NdeII	GATC	4 cut(s)	19, 45, 151, 405
NlaIII	CATG	2 cut(s)	141, 178
NlaIV	GGNNCC	2 cut(s)	219, 246
NmeAIII	GCCGAG	1 cut(s)	126
NspI	RCATGY	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	14
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	179, 323
PkrI	GCNGC	2 cut(s)	249, 355
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	219, 246
PspPI	GGNCC	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	4 cut(s)	19, 45, 151, 405
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	248, 354
Sau3AI	GATC	4 cut(s)	19, 45, 151, 405
Sau96I	GGNCC	1 cut(s)	98
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	2 cut(s)	168, 213
SetI	ASST	9 cut(s)	43, 63, 88, 168, 230, 273, 313, 348, 372
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	1 cut(s)	183
Sfr274I	CTCGAG	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	14, 36
SmoI	CTYRAG	2 cut(s)	14, 36
Sse9I	AATT	3 cut(s)	158, 360, 454
SsiI	CCGC	4 cut(s)	198, 248, 288, 394
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	95
TaiI	ACGT	1 cut(s)	230
TaqI	TCGA	3 cut(s)	15, 252, 321
TasI	AATT	3 cut(s)	158, 360, 454
TauI	GCSGC	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	179, 323
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	40, 206, 367
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	1 cut(s)	454
XceI	RCATGY	1 cut(s)	141
XhoI	CTCGAG	1 cut(s)	14
ZraI	GACGTC	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.