Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000265.1

Orthogroup ID

OG0001485

Physical Location & Seq

Genomic Coordinates Reverse (-)

47648 .. 48619

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggcacctaagcgcccctccaatgcaatgaacaatccccagtcgtcatcggaggaggaggacgaggaaccgtcgtcggaggaatataaaacagcctctgaatccgactccgaaacggagtccgagtccgagtccggctccgtcggggagacaggagtggccaatgccaagcctattgcttccaagcacgtggagaaggttactccgccgcccaaggccaccaagccctccgctagtcaggctaaacccggtaccaagcggctcggcggcgagagtgagttgattaaggactccaagaaggctaagaagaagaagggaaatgatgaagaggacttgaagaaggccaagaagaaggggattgataaagaggacgatggtgtagaagaggagttggagaaacccaaacagctgttccagagggtttggagcgaggaagatgagatcattttgcttaaaggcatgaatgagtacactatggagaaaaggttggaccctagtgcagatgtgaatgcatttcttaacttcatcaaaggcaagttgaagttgaatgttagcaagagccagttacaggacaaaattcgcagaatgaagaaaaagtttgagaacattgtgaacaacaagtacaaaccgaccaatcctcatgaatgggcggctttcgagttgtcgaagaatgtgtggggagatggtgaagatctagatgggaaggtggaacagctcaagtctaatgggaattctcagaatatgttgagggaggttctttggtttgataaaggtttcaaagagcttcggttgtctgaaactattgtgaaccaaggtctggagtggattgaggaatcaaactgtgctgaactgctaaaggataggtggaacaagctgcatgttgctgaattggagcattttgttatgaaggctgagcttatgagagatcaggccaagttgatattggaggcccttaagtcatcaaatcattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

323

Amino Acids

36.61

Weight (kDa)

5.7

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	138 - 227	2.2e-27	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11510 AT1G11510 AT1G44810 AT1G55950 AT1G61730 AT1G66420 AT2G01370 AT2G20805 AT2G25650 AT2G36340 AT3G07710 AT4G00232 AT4G00238 AT4G00250 AT4G00270 AT4G00390 AT4G00610 AT5G14280 AT5G41530 AT5G41765
fragaria_vesca	FvH4_1g25320 FvH4_3g02930 FvH4_5g33230
malus_domestica	MD05G1335900.v1.1
prunus_persica	Prupe.3G046700_v2.0.a1 Prupe.4G029400_v2.0.a1 Prupe.7G003400_v2.0.a1
pyrus_communis	pycom05g30730 pycom10g26270
rosa_chinensis	RchiOBHm_Chr5g0004541
rosa_laevigata	RLG00000022926 RLG00000031238
rosa_multiflora	Rmu_co8441915.1_g000001 Rmu_sc0000265.1_g000017 Rmu_sc0001208.1_g000073 Rmu_sc0002354.1_g000016
rosa_roxburghii	Rroxscaffold_1G00016900 Rroxscaffold_1G00070990 Rroxscaffold_6G00393920
rosa_rugosa	Rorug04G0412200
rosa_samantha	Rh3BG326200 Rh3CG323900 Rh3DG322300 Rh5AG040100 Rh5BG039500 Rh5CG043300 Rh5DG039000 Rh6CG160000
rosa_wichuraiana	Rw1G006950 Rw3G025620 Rw5G003850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	2 cut(s)	4, 251
AccB7I	CCANNNNNTGG	1 cut(s)	817
AciI	CCGC	6 cut(s)	206, 209, 231, 259, 267, 650
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	576, 730
AcvI	CACGTG	1 cut(s)	190
AfaI	GTAC	3 cut(s)	253, 470, 623
AfiI	CCNNNNNNNGG	2 cut(s)	568, 817
AflII	CTTAAG	1 cut(s)	953
AgsI	TTSAA	4 cut(s)	337, 541, 547, 778
AjuI	GAANNNNNNNTTGG	2 cut(s)	395, 427
AluBI	AGCT	5 cut(s)	409, 715, 784, 874, 916
AluI	AGCT	5 cut(s)	409, 715, 784, 874, 916
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	5 cut(s)	159, 216, 342, 930, 948
ApeKI	GCWGC	1 cut(s)	874
ApoI	RAATTY	2 cut(s)	576, 730
Asp718I	GGTACC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	490, 949
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	490
BalI	TGGCCA	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	4, 251
BbrPI	CACGTG	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	861
BccI	CCATC	3 cut(s)	368, 677, 692
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	3 cut(s)	234, 495, 695
BfoI	RGCGCY	1 cut(s)	16
BfrI	CTTAAG	1 cut(s)	953
BglII	AGATCT	1 cut(s)	691
BisI	GCNGC	5 cut(s)	209, 260, 268, 651, 875
BlpI	GCTNAGC	1 cut(s)	912
BlsI	GCNGC	5 cut(s)	210, 261, 269, 652, 876
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	490, 949
BmiI	GGNNCC	5 cut(s)	6, 69, 139, 253, 492
BmrFI	CCNGG	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	9
Bpu1102I	GCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	701
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	213, 811
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 470, 500
Bsc4I	CCNNNNNNNGG	2 cut(s)	568, 817
Bse1I	ACTGG	2 cut(s)	40, 562
Bse3DI	GCAATG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	213, 811
BseLI	CCNNNNNNNGG	2 cut(s)	568, 817
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	749, 903
BseNI	ACTGG	2 cut(s)	40, 562
BseRI	GAGGAG	3 cut(s)	68, 71, 401
BseXI	GCAGC	1 cut(s)	861
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	5 cut(s)	161, 218, 344, 932, 950
BshNI	GGYRCC	2 cut(s)	4, 251
BsiSI	CCGG	2 cut(s)	135, 249
BslI	CCNNNNNNNGG	2 cut(s)	568, 817
BsmAI	GTCTC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	5 cut(s)	161, 218, 344, 932, 950
Bsp143I	GATC	3 cut(s)	441, 691, 925
Bsp1720I	GCTNAGC	1 cut(s)	912
BspACI	CCGC	6 cut(s)	206, 209, 231, 259, 267, 650
BspANI	GGCC	5 cut(s)	161, 218, 344, 932, 950
BspCNI	CTCAG	2 cut(s)	748, 904
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	5 cut(s)	6, 69, 139, 253, 492
BspT107I	GGYRCC	2 cut(s)	4, 251
BspTI	CTTAAG	1 cut(s)	953
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	40, 562
BssECI	CCNNGG	2 cut(s)	213, 811
BssMI	GATC	3 cut(s)	441, 691, 925
BssT1I	CCWWGG	2 cut(s)	213, 811
Bst4CI	ACNGT	2 cut(s)	72, 842
Bst6I	CTCTTC	2 cut(s)	321, 378
BstAFI	CTTAAG	1 cut(s)	953
BstBAI	YACGTR	1 cut(s)	190
BstDEI	CTNAG	4 cut(s)	9, 303, 735, 912
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	444, 694, 928
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	441, 691, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	881
BstSCI	CCNGG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	861
BstX2I	RGATCY	1 cut(s)	691
BstXI	CCANNNNNNTGG	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	691
BsuRI	GGCC	5 cut(s)	161, 218, 344, 932, 950
CaiI	CAGNNNCTG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	490, 949
Csp6I	GTAC	3 cut(s)	252, 469, 622
CviAII	CATG	3 cut(s)	460, 641, 878
CviQI	GTAC	3 cut(s)	252, 469, 622
DdeI	CTNAG	4 cut(s)	9, 303, 735, 912
DpnI	GATC	3 cut(s)	443, 693, 927
DpnII	GATC	3 cut(s)	441, 691, 925
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	321, 378
EarI	CTCTTC	2 cut(s)	321, 378
EciI	GGCGGA	1 cut(s)	195
Eco130I	CCWWGG	2 cut(s)	213, 811
Eco47I	GGWCC	1 cut(s)	490
Eco72I	CACGTG	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	949
EcoRI	GAATTC	1 cut(s)	730
EcoT14I	CCWWGG	2 cut(s)	213, 811
EcoT22I	ATGCAT	1 cut(s)	514
ErhI	CCWWGG	2 cut(s)	213, 811
FaeI	CATG	3 cut(s)	463, 644, 881
FaiI	YATR	8 cut(s)	87, 461, 476, 642, 743, 879, 905, 920
FatI	CATG	3 cut(s)	459, 640, 877
Fnu4HI	GCNGC	5 cut(s)	209, 260, 268, 651, 875
Fsp4HI	GCNGC	5 cut(s)	209, 260, 268, 651, 875
FspBI	CTAG	3 cut(s)	234, 495, 695
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	5 cut(s)	209, 260, 268, 651, 875
GsuI	CTGGAG	1 cut(s)	839
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	5 cut(s)	161, 218, 344, 932, 950
HapII	CCGG	2 cut(s)	135, 249
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	463, 644, 881
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	7 cut(s)	101, 107, 119, 125, 131, 290, 833
HpaII	CCGG	2 cut(s)	135, 249
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	3 cut(s)	471, 613, 808
Hpy188I	TCNGA	9 cut(s)	52, 79, 100, 106, 112, 124, 130, 738, 796
Hpy188III	TCNNGA	4 cut(s)	415, 641, 695, 818
Hpy8I	GTNNAC	3 cut(s)	471, 613, 808
Hpy99I	CGWCG	3 cut(s)	76, 79, 146
HpyAV	CCTTC	7 cut(s)	190, 292, 307, 334, 346, 697, 901
HpyCH4III	ACNGT	2 cut(s)	72, 842
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	4 cut(s)	26, 500, 512, 877
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	4 cut(s)	9, 303, 735, 912
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	3 cut(s)	463, 644, 881
HspAI	GCGC	1 cut(s)	13
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	441, 691, 925
LmnI	GCTCC	3 cut(s)	143, 426, 892
Lsp1109I	GCAGC	1 cut(s)	861
MaeI	CTAG	3 cut(s)	234, 495, 695
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	2 cut(s)	199, 564
MalI	GATC	3 cut(s)	443, 693, 927
MboI	GATC	3 cut(s)	441, 691, 925
MflI	RGATCY	1 cut(s)	691
MlsI	TGGCCA	1 cut(s)	161
MluCI	AATT	3 cut(s)	576, 730, 887
MluNI	TGGCCA	1 cut(s)	161
MlyI	GAGTC	5 cut(s)	101, 128, 134, 140, 284
MmeI	TCCRAC	4 cut(s)	57, 129, 372, 468
Mox20I	TGGCCA	1 cut(s)	161
Mph1103I	ATGCAT	1 cut(s)	514
MscI	TGGCCA	1 cut(s)	161
MseI	TTAA	4 cut(s)	285, 453, 519, 954
Msp20I	TGGCCA	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	409
MspCI	CTTAAG	1 cut(s)	953
MspI	CCGG	2 cut(s)	135, 249
MspR9I	CCNGG	1 cut(s)	249
Mva1269I	GAATGC	1 cut(s)	514
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	3 cut(s)	441, 691, 925
NlaIII	CATG	3 cut(s)	463, 644, 881
NlaIV	GGNNCC	5 cut(s)	6, 69, 139, 253, 492
NmeAIII	GCCGAG	1 cut(s)	243
NsiI	ATGCAT	1 cut(s)	514
NspI	RCATGY	1 cut(s)	881
PagI	TCATGA	1 cut(s)	640
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	101, 833
PflMI	CCANNNNNTGG	1 cut(s)	817
PkrI	GCNGC	5 cut(s)	210, 261, 269, 652, 876
PleI	GAGTC	5 cut(s)	101, 127, 133, 139, 284
PmaCI	CACGTG	1 cut(s)	190
PmlI	CACGTG	1 cut(s)	190
PpsI	GAGTC	5 cut(s)	101, 127, 133, 139, 284
Ppu21I	YACGTR	1 cut(s)	190
PspCI	CACGTG	1 cut(s)	190
PspN4I	GGNNCC	5 cut(s)	6, 69, 139, 253, 492
PspPI	GGNCC	2 cut(s)	490, 949
PsrI	GAACNNNNNNTAC	2 cut(s)	605, 637
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	691
PvuII	CAGCTG	1 cut(s)	409
RsaI	GTAC	3 cut(s)	253, 470, 623
RsaNI	GTAC	3 cut(s)	252, 469, 622
SaqAI	TTAA	4 cut(s)	285, 453, 519, 954
SatI	GCNGC	5 cut(s)	209, 260, 268, 651, 875
Sau3AI	GATC	3 cut(s)	441, 691, 925
Sau96I	GGNCC	2 cut(s)	490, 949
SchI	GAGTC	5 cut(s)	101, 128, 134, 140, 284
ScrFI	CCNGG	1 cut(s)	249
SinI	GGWCC	1 cut(s)	490
SmlI	CTYRAG	2 cut(s)	716, 953
SmoI	CTYRAG	2 cut(s)	716, 953
Sse9I	AATT	3 cut(s)	576, 730, 887
SsiI	CCGC	6 cut(s)	206, 209, 231, 259, 267, 650
SspMI	CTAG	3 cut(s)	234, 495, 695
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	2 cut(s)	213, 811
TaaI	ACNGT	2 cut(s)	72, 842
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	657, 665
TasI	AATT	3 cut(s)	576, 730, 887
TatI	WGTACW	2 cut(s)	468, 621
TauI	GCSGC	4 cut(s)	211, 262, 270, 653
TfiI	GAWTC	2 cut(s)	101, 833
Tru1I	TTAA	4 cut(s)	285, 453, 519, 954
Tru9I	TTAA	4 cut(s)	285, 453, 519, 954
TseI	GCWGC	1 cut(s)	874
TspDTI	ATGAA	7 cut(s)	44, 339, 476, 514, 602, 657, 920
TspGWI	ACGGA	2 cut(s)	130, 131
Van91I	CCANNNNNTGG	1 cut(s)	817
Vha464I	CTTAAG	1 cut(s)	953
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	2 cut(s)	576, 730
XbaI	TCTAGA	1 cut(s)	694
XceI	RCATGY	1 cut(s)	881
XcmI	CCANNNNNNNNNTGG	1 cut(s)	940
XspI	CTAG	3 cut(s)	234, 495, 695
Zsp2I	ATGCAT	1 cut(s)	514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.