Rmu_sc0002398.1_g000003

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002398.1
OG0002115
Physical Location & Seq
Forward (+)
11501 .. 13136
1636 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 600 bp
atgggacctacagttggacagaaacttaccatacaggggtgcagaggtgatttacgaaatgagtctacagatttgaaggtgcatgttggactgcaattcaacaaaattagacgtgggggtcattcacaggccggactggccccatcatctctaaggcctagtttgaagaagggattggttcctaatggaaaattttttgccgtggggggcaagaagaagactgtttggaagggtaggaaggttctccataatgaaaatttgagtcagggacgcgctcagaagtgttcaaccgtgatggaggaggagaaggacgctgaggtttcggaggaggggggatcgtcgcagccggtgaggctgtggaatctgaggacgaggaaggctccaattggcggtggcggcggcaaggggttgaaaatagaggagagaaaggtgaattacttgccgtgggagagtaaggatctagagaagaaggacggggccaagttctcactcactctctccaagaaggagatcgaagaggatttcatacagatgctcggccaccgccctccggctgccccaagaagaggcctagagtggtgcagaagcaattggatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

199

Amino Acids

22.08

Weight (kDa)

10.01

Isoelectric Point (pI)

53.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 166 - 189 5.6e-07 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 117
AccI GTMKAC 1 cut(s) 65
AccII CGCG 1 cut(s) 273
AciI CCGC 4 cut(s) 390, 396, 399, 544
AclWI GGATC 2 cut(s) 343, 465
AcoI YGGCCR 1 cut(s) 538
AcsI RAATTY 2 cut(s) 191, 256
AfiI CCNNNNNNNGG 5 cut(s) 14, 36, 389, 550, 566
AgsI TTSAA 5 cut(s) 76, 100, 166, 288, 412
AjiI CACGTC 1 cut(s) 113
AjuI GAANNNNNNNTTGG 2 cut(s) 158, 190
AlwI GGATC 2 cut(s) 343, 465
AoxI GGCC 6 cut(s) 129, 138, 155, 477, 538, 568
ApeKI GCWGC 2 cut(s) 343, 554
ApoI RAATTY 2 cut(s) 191, 256
AspLEI GCGC 1 cut(s) 275
AspS9I GGNCC 3 cut(s) 5, 139, 477
AsuHPI GGTGA 3 cut(s) 59, 361, 442
AvaII GGWCC 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 224
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 355, 541
BccI CCATC 2 cut(s) 151, 289
BceAI ACGGC 2 cut(s) 185, 427
BfaI CTAG 3 cut(s) 159, 461, 572
BfmI CTRYAG 2 cut(s) 9, 66
BglI GCCNNNNNGGC 2 cut(s) 137, 352
BisI GCNGC 4 cut(s) 344, 397, 400, 555
BlsI GCNGC 4 cut(s) 345, 398, 401, 556
Bme18I GGWCC 1 cut(s) 5
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 3 cut(s) 5, 139, 477
BmiI GGNNCC 5 cut(s) 6, 141, 180, 381, 478
BmsI GCATC 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 224
BplI GAGNNNNNCTC 2 cut(s) 364, 396
Bpu10I CCTNAGC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 201, 443
Bsc4I CCNNNNNNNGG 5 cut(s) 14, 36, 389, 550, 566
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 201, 443
BseLI CCNNNNNNNGG 5 cut(s) 14, 36, 389, 550, 566
BseMII CTCAG 3 cut(s) 290, 306, 356
BseNI ACTGG 1 cut(s) 141
BseRI GAGGAG 4 cut(s) 314, 317, 341, 434
BseXI GCAGC 2 cut(s) 355, 541
BsgI GTGCAG 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 6 cut(s) 131, 140, 157, 479, 540, 570
BsiSI CCGG 3 cut(s) 132, 347, 551
BslFI GGGAC 2 cut(s) 18, 282
BslI CCNNNNNNNGG 5 cut(s) 14, 36, 389, 550, 566
BsmFI GGGAC 2 cut(s) 18, 282
BsnI GGCC 6 cut(s) 131, 140, 157, 479, 540, 570
Bsp143I GATC 3 cut(s) 335, 457, 510
BspACI CCGC 4 cut(s) 390, 396, 399, 544
BspANI GGCC 6 cut(s) 131, 140, 157, 479, 540, 570
BspCNI CTCAG 3 cut(s) 289, 307, 357
BspFNI CGCG 1 cut(s) 273
BspLI GGNNCC 5 cut(s) 6, 141, 180, 381, 478
BspPI GGATC 2 cut(s) 343, 465
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 201, 443
BssMI GATC 3 cut(s) 335, 457, 510
Bst4CI ACNGT 3 cut(s) 13, 223, 292
Bst6I CTCTTC 2 cut(s) 510, 559
BstDEI CTNAG 4 cut(s) 152, 276, 315, 365
BstDSI CCRYGG 2 cut(s) 201, 443
BstFNI CGCG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 3 cut(s) 338, 460, 513
BstMBI GATC 3 cut(s) 335, 457, 510
BstMWI GCNNNNNNNGC 3 cut(s) 137, 352, 396
BstNSI RCATGY 1 cut(s) 86
BstSFI CTRYAG 2 cut(s) 9, 66
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 355, 541
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BsuRI GGCC 6 cut(s) 131, 140, 157, 479, 540, 570
BtgI CCRYGG 2 cut(s) 201, 443
BtrI CACGTC 1 cut(s) 113
CfoI GCGC 1 cut(s) 275
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 3 cut(s) 5, 139, 477
CseI GACGC 2 cut(s) 279, 320
CviAII CATG 1 cut(s) 83
DdeI CTNAG 4 cut(s) 152, 276, 315, 365
DpnI GATC 3 cut(s) 337, 459, 512
DpnII GATC 3 cut(s) 335, 457, 510
DrdI GACNNNNNNGTC 1 cut(s) 117
DseDI GACNNNNNNGTC 1 cut(s) 117
EaeI YGGCCR 1 cut(s) 538
Eam1104I CTCTTC 2 cut(s) 510, 559
EarI CTCTTC 2 cut(s) 510, 559
Eco147I AGGCCT 2 cut(s) 157, 570
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 32, 84, 249, 527, 598
FaqI GGGAC 2 cut(s) 18, 282
FatI CATG 1 cut(s) 82
FblI GTMKAC 1 cut(s) 65
Fnu4HI GCNGC 4 cut(s) 344, 397, 400, 555
Fsp4HI GCNGC 4 cut(s) 344, 397, 400, 555
FspBI CTAG 3 cut(s) 159, 461, 572
GlaI GCGC 1 cut(s) 274
GluI GCNGC 4 cut(s) 344, 397, 400, 555
HaeIII GGCC 6 cut(s) 131, 140, 157, 479, 540, 570
HapII CCGG 3 cut(s) 132, 347, 551
HgaI GACGC 2 cut(s) 279, 320
HhaI GCGC 1 cut(s) 275
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HinfI GANTC 3 cut(s) 62, 262, 361
HpaII CCGG 3 cut(s) 132, 347, 551
HphI GGTGA 3 cut(s) 59, 361, 442
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 3 cut(s) 279, 325, 366
Hpy188III TCNNGA 1 cut(s) 461
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 8 cut(s) 70, 163, 223, 232, 301, 370, 463, 499
HpyCH4III ACNGT 3 cut(s) 13, 223, 292
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 42, 82, 94, 582
HpyF10VI GCNNNNNNNGC 3 cut(s) 137, 352, 396
HpyF3I CTNAG 4 cut(s) 152, 276, 315, 365
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 1 cut(s) 273
Kzo9I GATC 3 cut(s) 335, 457, 510
LmnI GCTCC 1 cut(s) 385
LpnPI CCDG 7 cut(s) 20, 113, 122, 145, 251, 360, 564
Lsp1109I GCAGC 2 cut(s) 355, 541
LweI GCATC 1 cut(s) 522
MaeI CTAG 3 cut(s) 159, 461, 572
MaeII ACGT 1 cut(s) 112
MalI GATC 3 cut(s) 337, 459, 512
MboI GATC 3 cut(s) 335, 457, 510
MboII GAAGA 6 cut(s) 178, 226, 229, 478, 527, 576
MfeI CAATTG 2 cut(s) 384, 589
MflI RGATCY 1 cut(s) 457
MluCI AATT 7 cut(s) 95, 105, 191, 256, 384, 433, 589
MlyI GAGTC 2 cut(s) 71, 271
MmeI TCCRAC 1 cut(s) 67
MslI CAYNNNNRTG 1 cut(s) 530
MspI CCGG 3 cut(s) 132, 347, 551
MunI CAATTG 2 cut(s) 384, 589
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 3 cut(s) 137, 352, 396
NdeII GATC 3 cut(s) 335, 457, 510
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 5 cut(s) 6, 141, 180, 381, 478
NmeAIII GCCGAG 1 cut(s) 516
NspI RCATGY 1 cut(s) 86
PceI AGGCCT 2 cut(s) 157, 570
PfeI GAWTC 1 cut(s) 361
PkrI GCNGC 4 cut(s) 345, 398, 401, 556
PleI GAGTC 2 cut(s) 70, 270
PpsI GAGTC 2 cut(s) 70, 270
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
PspN4I GGNNCC 5 cut(s) 6, 141, 180, 381, 478
PspPI GGNCC 3 cut(s) 5, 139, 477
PspPPI RGGWCCY 1 cut(s) 5
PsuI RGATCY 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 530
SatI GCNGC 4 cut(s) 344, 397, 400, 555
Sau3AI GATC 3 cut(s) 335, 457, 510
Sau96I GGNCC 3 cut(s) 5, 139, 477
SchI GAGTC 2 cut(s) 71, 271
SetI ASST 7 cut(s) 10, 49, 81, 115, 243, 321, 432
SfaNI GCATC 1 cut(s) 522
SfcI CTRYAG 2 cut(s) 9, 66
SfiI GGCCNNNNNGGCC 1 cut(s) 137
SinI GGWCC 1 cut(s) 5
SmiMI CAYNNNNRTG 1 cut(s) 530
Sse9I AATT 7 cut(s) 95, 105, 191, 256, 384, 433, 589
SseBI AGGCCT 2 cut(s) 157, 570
SsiI CCGC 4 cut(s) 390, 396, 399, 544
SspMI CTAG 3 cut(s) 159, 461, 572
StuI AGGCCT 2 cut(s) 157, 570
TaaI ACNGT 3 cut(s) 13, 223, 292
TaiI ACGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 513
TasI AATT 7 cut(s) 95, 105, 191, 256, 384, 433, 589
TauI GCSGC 2 cut(s) 399, 402
TfiI GAWTC 1 cut(s) 361
TseI GCWGC 2 cut(s) 343, 554
TspDTI ATGAA 2 cut(s) 267, 514
VpaK11BI GGWCC 1 cut(s) 5
XapI RAATTY 2 cut(s) 191, 256
XbaI TCTAGA 1 cut(s) 460
XceI RCATGY 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 65
XspI CTAG 3 cut(s) 159, 461, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.