Rmu_sc0003726.1_g000003

Protein of unknown function (DUF1639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003726.1
OG0002115
Physical Location & Seq
Reverse (-)
7194 .. 8324
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 981 bp
atggtgtatacaggggggtcggaggagagaacgagagtggtggcggctaagtcgtcggcggcggcggcggggatgaattccgagagagcggcgaagcctctgcacaatttcagtttgccttgggatttgaagtgggggaaccagaggcacctgcggtgcatgaaggtggattccgatggcgacgcggcggcggattttgatcggcgatcggcggtgggggtggttcggcggcggggaggggaatcggaggggcagttcgacaggcggagcagggtgaggaggcagaggatcgagagagccggcgacggcgaagaggaggaggggatcgaggcggtgagggagaagctcatgtttgaattcaaaacggcggcggacaagatgaaagacgcgattttgagaggggagaaggaagaggtggaggaggaggacgaccacgaccacgagccggcgccggttgctgctgctgctgctgctgttgttactgacgtgacggcggaggcggaggaggaggacgctgaggctgtggctgcggaggaggggggatcgtcgccggcggcggcggcggtgaggccgtggaatctgaggacgaggagggcggcgtgcaaggctccaattggcggtggtggcggcaaggggttgaaaattgaggagaggaagacgaattactcgccgttgaggagtgagggaaacaatggcggcaagtcgccgaggctggtccgaggggcttccggttcgggtctggagaaggacgggcccaaggaaaggcccaagttctcactcacgctctccaagaaggagatcgatgaggatttcatacagatgctcggccaccgccctccccgccgccccaagaagcggcccagagcggtgcagaagcaattggatgctttgtttcccggtatgtggttgacggaggtctcagctgattcgtacaaggttcctgagttccctgaaaatgtcaaggtatttgccttcttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1639

Protein Analysis

326

Amino Acids

35.81

Weight (kDa)

7.01

Isoelectric Point (pI)

66.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1639 PF07797 262 - 311 2.6e-28 Protein of unknown function (DUF1639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 159
AccB1I GGYRCC 2 cut(s) 147, 448
AccBSI CCGCTC 2 cut(s) 89, 866
AccI GTMKAC 1 cut(s) 8
AccII CGCG 2 cut(s) 185, 389
AclWI GGATC 3 cut(s) 296, 332, 550
AcoI YGGCCR 1 cut(s) 826
AcsI RAATTY 2 cut(s) 76, 356
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 932
AfiI CCNNNNNNNGG 5 cut(s) 445, 617, 762, 855, 903
AgsI TTSAA 4 cut(s) 130, 356, 361, 640
AjiI CACGTC 1 cut(s) 487
AloI GAACNNNNNNTCC 2 cut(s) 239, 271
AluBI AGCT 2 cut(s) 346, 923
AluI AGCT 2 cut(s) 346, 923
Alw26I GTCTC 1 cut(s) 922
AlwI GGATC 3 cut(s) 296, 332, 550
AoxI GGCC 5 cut(s) 569, 752, 764, 826, 857
ApaI GGGCCC 1 cut(s) 756
ApeKI GCWGC 6 cut(s) 458, 461, 464, 467, 470, 527
ApoI RAATTY 2 cut(s) 76, 356
AspLEI GCGC 1 cut(s) 451
AspS9I GGNCC 5 cut(s) 715, 752, 753, 765, 858
AsuC2I CCSGG 1 cut(s) 897
AsuHPI GGTGA 3 cut(s) 286, 346, 577
AvaII GGWCC 1 cut(s) 715
BaeGI GKGCMC 1 cut(s) 756
BanI GGYRCC 2 cut(s) 147, 448
BanII GRGCYC 1 cut(s) 756
BarI GAAGNNNNNNTAC 2 cut(s) 647, 679
BauI CACGAG 1 cut(s) 440
BbsI GAAGAC 1 cut(s) 662
BbvCI CCTCAGC 1 cut(s) 516
BbvI GCAGC 6 cut(s) 445, 448, 451, 454, 457, 514
BccI CCATC 1 cut(s) 170
BceAI ACGGC 5 cut(s) 322, 381, 507, 556, 655
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BcnI CCSGG 1 cut(s) 897
BcoDI GTCTC 1 cut(s) 922
BfoI RGCGCY 1 cut(s) 452
BfuAI ACCTGC 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 897
Bme18I GGWCC 1 cut(s) 715
BmgBI CACGTC 1 cut(s) 487
BmgT120I GGNCC 5 cut(s) 715, 752, 753, 765, 858
BmiI GGNNCC 6 cut(s) 140, 149, 450, 609, 754, 939
BmrFI CCNGG 1 cut(s) 897
BmsI GCATC 2 cut(s) 810, 874
BoxI GACNNNNGTC 1 cut(s) 914
BpiI GAAGAC 1 cut(s) 662
BpmI CTGGAG 1 cut(s) 761
Bpu10I CCTNAGC 1 cut(s) 516
BpuMI CCSGG 1 cut(s) 897
Bsa29I ATCGAT 1 cut(s) 801
BsaBI GATNNNNATC 1 cut(s) 198
BsaHI GRCGYC 1 cut(s) 449
BsaI GGTCTC 1 cut(s) 922
BsaJI CCNNGG 5 cut(s) 119, 572, 707, 718, 756
BsaWI WCCGGW 1 cut(s) 728
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 5 cut(s) 445, 617, 762, 855, 903
Bse118I RCCGGY 4 cut(s) 299, 445, 451, 550
Bse8I GATNNNNATC 1 cut(s) 198
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 5 cut(s) 119, 572, 707, 718, 756
BseGI GGATG 2 cut(s) 78, 889
BseJI GATNNNNATC 1 cut(s) 198
BseLI CCNNNNNNNGG 5 cut(s) 445, 617, 762, 855, 903
BseMII CTCAG 4 cut(s) 507, 572, 933, 933
BseSI GKGCMC 1 cut(s) 756
BseXI GCAGC 6 cut(s) 445, 448, 451, 454, 457, 514
BsgI GTGCAG 2 cut(s) 86, 890
Bsh1236I CGCG 2 cut(s) 185, 389
Bsh1285I CGRYCG 1 cut(s) 209
BshFI GGCC 5 cut(s) 571, 754, 766, 828, 859
BshNI GGYRCC 2 cut(s) 147, 448
BshVI ATCGAT 1 cut(s) 801
BsiEI CGRYCG 1 cut(s) 209
BsiSI CCGG 6 cut(s) 300, 446, 452, 551, 729, 897
BslI CCNNNNNNNGG 5 cut(s) 445, 617, 762, 855, 903
BsmAI GTCTC 1 cut(s) 922
BsnI GGCC 5 cut(s) 571, 754, 766, 828, 859
Bso31I GGTCTC 1 cut(s) 922
Bsp120I GGGCCC 1 cut(s) 752
Bsp1286I GDGCHC 1 cut(s) 756
Bsp143I GATC 6 cut(s) 199, 206, 288, 324, 542, 798
BspANI GGCC 5 cut(s) 571, 754, 766, 828, 859
BspCNI CTCAG 4 cut(s) 508, 573, 932, 934
BspDI ATCGAT 1 cut(s) 801
BspFNI CGCG 2 cut(s) 185, 389
BspLI GGNNCC 6 cut(s) 140, 149, 450, 609, 754, 939
BspMI ACCTGC 1 cut(s) 159
BspPI GGATC 3 cut(s) 296, 332, 550
BspT107I GGYRCC 2 cut(s) 147, 448
BspTNI GGTCTC 1 cut(s) 922
BsrBI CCGCTC 2 cut(s) 89, 866
BsrFI RCCGGY 4 cut(s) 299, 445, 451, 550
BssAI RCCGGY 4 cut(s) 299, 445, 451, 550
BssECI CCNNGG 5 cut(s) 119, 572, 707, 718, 756
BssMI GATC 6 cut(s) 199, 206, 288, 324, 542, 798
BssNAI GTATAC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 449
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 119, 756
Bst1107I GTATAC 1 cut(s) 9
Bst2BI CACGAG 1 cut(s) 440
Bst6I CTCTTC 2 cut(s) 306, 405
BstACI GRCGYC 1 cut(s) 449
BstC8I GCNNGC 4 cut(s) 301, 447, 552, 601
BstDEI CTNAG 5 cut(s) 48, 516, 581, 919, 942
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 2 cut(s) 78, 889
BstFNI CGCG 2 cut(s) 185, 389
BstH2I RGCGCY 1 cut(s) 452
BstHHI GCGC 1 cut(s) 451
BstKTI GATC 6 cut(s) 202, 209, 291, 327, 545, 801
BstMAI GTCTC 1 cut(s) 922
BstMBI GATC 6 cut(s) 199, 206, 288, 324, 542, 798
BstMCI CGRYCG 1 cut(s) 209
BstPAI GACNNNNGTC 1 cut(s) 914
BstSCI CCNGG 1 cut(s) 895
BstSLI GKGCMC 1 cut(s) 756
BstUI CGCG 2 cut(s) 185, 389
BstV1I GCAGC 6 cut(s) 445, 448, 451, 454, 457, 514
BstV2I GAAGAC 1 cut(s) 662
BstZ17I GTATAC 1 cut(s) 9
Bsu15I ATCGAT 1 cut(s) 801
BsuRI GGCC 5 cut(s) 571, 754, 766, 828, 859
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 1 cut(s) 572
BtrI CACGTC 1 cut(s) 487
BtsCI GGATG 2 cut(s) 78, 889
BveI ACCTGC 1 cut(s) 159
Cac8I GCNNGC 4 cut(s) 301, 447, 552, 601
CfoI GCGC 1 cut(s) 451
Cfr10I RCCGGY 4 cut(s) 299, 445, 451, 550
Cfr13I GGNCC 5 cut(s) 715, 752, 753, 765, 858
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 3 cut(s) 191, 395, 521
Csp6I GTAC 1 cut(s) 931
CviAII CATG 2 cut(s) 160, 349
CviQI GTAC 1 cut(s) 931
DdeI CTNAG 5 cut(s) 48, 516, 581, 919, 942
DinI GGCGCC 1 cut(s) 450
DpnI GATC 6 cut(s) 201, 208, 290, 326, 544, 800
DpnII GATC 6 cut(s) 199, 206, 288, 324, 542, 798
EaeI YGGCCR 1 cut(s) 826
Eam1104I CTCTTC 2 cut(s) 306, 405
EarI CTCTTC 2 cut(s) 306, 405
EciI GGCGGA 5 cut(s) 206, 280, 386, 509, 515
Eco130I CCWWGG 2 cut(s) 119, 756
Eco24I GRGCYC 1 cut(s) 756
Eco31I GGTCTC 1 cut(s) 922
Eco47I GGWCC 1 cut(s) 715
EcoRI GAATTC 2 cut(s) 76, 356
EcoT14I CCWWGG 2 cut(s) 119, 756
EcoT38I GRGCYC 1 cut(s) 756
EgeI GGCGCC 1 cut(s) 450
EheI GGCGCC 1 cut(s) 450
ErhI CCWWGG 2 cut(s) 119, 756
FaeI CATG 2 cut(s) 163, 352
FaiI YATR 5 cut(s) 9, 161, 350, 815, 902
FatI CATG 2 cut(s) 159, 348
FauI CCCGC 3 cut(s) 61, 225, 848
FblI GTMKAC 1 cut(s) 8
FokI GGATG 2 cut(s) 85, 896
FriOI GRGCYC 1 cut(s) 756
GlaI GCGC 1 cut(s) 450
GsuI CTGGAG 1 cut(s) 761
HaeII RGCGCY 1 cut(s) 452
HaeIII GGCC 5 cut(s) 571, 754, 766, 828, 859
HapII CCGG 6 cut(s) 300, 446, 452, 551, 729, 897
HgaI GACGC 3 cut(s) 191, 395, 521
HhaI GCGC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 2 cut(s) 163, 352
Hin6I GCGC 1 cut(s) 449
HinP1I GCGC 1 cut(s) 449
HincII GTYRAC 1 cut(s) 909
HindII GTYRAC 1 cut(s) 909
HinfI GANTC 4 cut(s) 170, 242, 577, 926
HpaII CCGG 6 cut(s) 300, 446, 452, 551, 729, 897
HphI GGTGA 3 cut(s) 286, 346, 577
Hpy166II GTNNAC 2 cut(s) 9, 909
Hpy188I TCNGA 7 cut(s) 22, 82, 175, 247, 582, 719, 980
Hpy188III TCNNGA 3 cut(s) 292, 740, 941
Hpy8I GTNNAC 2 cut(s) 9, 909
Hpy99I CGWCG 4 cut(s) 58, 185, 308, 550
HpyAV CCTTC 4 cut(s) 157, 400, 739, 787
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 4 cut(s) 103, 159, 603, 871
HpyF3I CTNAG 5 cut(s) 48, 516, 581, 919, 942
HpySE526I ACGT 1 cut(s) 486
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 2 cut(s) 163, 352
HspAI GCGC 1 cut(s) 449
KasI GGCGCC 1 cut(s) 448
KroI GCCGGC 3 cut(s) 299, 445, 550
KroNI GCCGGC 3 cut(s) 301, 447, 552
Kzo9I GATC 6 cut(s) 199, 206, 288, 324, 542, 798
LmnI GCTCC 2 cut(s) 267, 613
Lsp1109I GCAGC 6 cut(s) 445, 448, 451, 454, 457, 514
LweI GCATC 2 cut(s) 810, 874
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 2 cut(s) 478, 487
MalI GATC 6 cut(s) 201, 208, 290, 326, 544, 800
MbiI CCGCTC 2 cut(s) 89, 866
MboI GATC 6 cut(s) 199, 206, 288, 324, 542, 798
MboII GAAGA 4 cut(s) 323, 422, 667, 967
MfeI CAATTG 2 cut(s) 612, 878
MhlI GDGCHC 1 cut(s) 756
MluCI AATT 7 cut(s) 76, 106, 356, 612, 642, 661, 878
Mly113I GGCGCC 1 cut(s) 449
MreI CGCCGGCG 1 cut(s) 550
MroNI GCCGGC 3 cut(s) 299, 445, 550
MslI CAYNNNNRTG 2 cut(s) 164, 818
MspA1I CMGCKG 1 cut(s) 923
MspI CCGG 6 cut(s) 300, 446, 452, 551, 729, 897
MspR9I CCNGG 1 cut(s) 897
MunI CAATTG 2 cut(s) 612, 878
MvnI CGCG 2 cut(s) 185, 389
NaeI GCCGGC 3 cut(s) 301, 447, 552
NarI GGCGCC 1 cut(s) 449
NciI CCSGG 1 cut(s) 897
NdeII GATC 6 cut(s) 199, 206, 288, 324, 542, 798
NgoMIV GCCGGC 3 cut(s) 299, 445, 550
NlaIII CATG 2 cut(s) 163, 352
NlaIV GGNNCC 6 cut(s) 140, 149, 450, 609, 754, 939
NmeAIII GCCGAG 2 cut(s) 732, 804
NmuCI GTSAC 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 159
PdiI GCCGGC 3 cut(s) 301, 447, 552
PfeI GAWTC 4 cut(s) 170, 242, 577, 926
Ple19I CGATCG 1 cut(s) 209
PluTI GGCGCC 1 cut(s) 452
PshAI GACNNNNGTC 1 cut(s) 914
PspN4I GGNNCC 6 cut(s) 140, 149, 450, 609, 754, 939
PspOMI GGGCCC 1 cut(s) 752
PspPI GGNCC 5 cut(s) 715, 752, 753, 765, 858
PvuI CGATCG 1 cut(s) 209
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 1 cut(s) 932
RsaNI GTAC 1 cut(s) 931
RseI CAYNNNNRTG 2 cut(s) 164, 818
Sau3AI GATC 6 cut(s) 199, 206, 288, 324, 542, 798
Sau96I GGNCC 5 cut(s) 715, 752, 753, 765, 858
ScrFI CCNGG 1 cut(s) 897
SduI GDGCHC 1 cut(s) 756
SetI ASST 9 cut(s) 153, 168, 348, 417, 489, 918, 925, 939, 966
SfaNI GCATC 2 cut(s) 810, 874
SfoI GGCGCC 1 cut(s) 450
SgrAI CRCCGGYG 1 cut(s) 550
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 2 cut(s) 164, 818
Sse9I AATT 7 cut(s) 76, 106, 356, 612, 642, 661, 878
SspDI GGCGCC 1 cut(s) 448
StyD4I CCNGG 1 cut(s) 895
StyI CCWWGG 2 cut(s) 119, 756
TaiI ACGT 1 cut(s) 489
TaqI TCGA 4 cut(s) 258, 291, 327, 801
TasI AATT 7 cut(s) 76, 106, 356, 612, 642, 661, 878
TfiI GAWTC 4 cut(s) 170, 242, 577, 926
TseFI GTSAC 1 cut(s) 487
TseI GCWGC 6 cut(s) 458, 461, 464, 467, 470, 527
Tsp45I GTSAC 1 cut(s) 487
TspDTI ATGAA 4 cut(s) 89, 176, 395, 802
TspGWI ACGGA 1 cut(s) 926
VpaK11BI GGWCC 1 cut(s) 715
XapI RAATTY 2 cut(s) 76, 356
XmiI GTMKAC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.