Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Reverse (-)

4880030 .. 4882265

Gene Structure 2236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATGAGTTTCGTGATTTCAGATGAATTTCTGGGGACATTTGTGCCGATTCTGGTGTATTGGGTGTATTCAGGGATGTACATTTGCTTAGGATCTTTGGATAAATATAGATTGCATTCGAAGATAGATGAGGATGAGAAGAATCTCGTTTCTAAATCTGCCGTCGTTAAGGGCGTTCTTCTTCAACAGACTCTTCAGGCTATTATCTCCGTTATTCTCTTCAAGATAACAGGAAGTGATGCAGATGCTGCTACGACACAGCAATTTTCCATTCTACTTCTGGCTAGGCAGTTTATCATCGCTATGCTTGTAATTGACACTTGGCAATATTTCATTCATCGATATATGCACCTCAACAAGTTCTTATACAAGCACATCCACTCTCAGCATCATCGCCTTATTGTGCCTTATTCGTATGGAGCTCTATACAACCATCCACTAGAAGGTCTTCTCTTGGACACTATTGGTGGTGCTTTGTCTTTCCTCTTCTCTGGTATGTCCCCAAGAACAGCCATCTTTTTCTTCTCCTTCGCTACCATCAAAACAGTAGATGATCATTGTGGACTATGGCTTCCGGGAAATCCATTTCACATCTTCTTCAGTAATAACTCTGCTTACCATGATGTTCACCACCAACTCTATGGAACCAAATACAACTTCTCGCAGCCATTCTTTGTTATGTGGGATAGGATTCTCGGCACTTACTTGCCTTATTCATTGGAGAAAAGAGCCAATGGAGGATTTGAAACACGGCCAATCAAAGTATCCAAAGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0030148 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042284 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0046520 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

259

Amino Acids

29.83

Weight (kDa)

7.83

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	98 - 234	2.6e-25	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	752
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	2 cut(s)	179, 583
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	185, 223, 746
AjuI	GAANNNNNNNTTGG	2 cut(s)	641, 673
AluBI	AGCT	1 cut(s)	422
AluI	AGCT	1 cut(s)	422
Alw21I	GWGCWC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	100
AlwNI	CAGNNNCTG	1 cut(s)	248
AoxI	GGCC	1 cut(s)	752
ApeKI	GCWGC	2 cut(s)	248, 664
ApoI	RAATTY	1 cut(s)	26
Asp700I	GAANNNNTTC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	576
AsuHPI	GGTGA	1 cut(s)	620
AsuII	TTCGAA	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	424
BbsI	GAAGAC	1 cut(s)	440
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	235, 676
BccI	CCATC	3 cut(s)	441, 521, 545
BceAI	ACGGC	2 cut(s)	146, 767
BciVI	GTATCC	1 cut(s)	775
BclI	TGATCA	1 cut(s)	553
BcnI	CCSGG	1 cut(s)	576
BfaI	CTAG	2 cut(s)	285, 440
BfuI	GTATCC	1 cut(s)	775
BisI	GCNGC	2 cut(s)	249, 665
BlsI	GCNGC	2 cut(s)	250, 666
Bme1390I	CCNGG	1 cut(s)	576
BmiI	GGNNCC	1 cut(s)	646
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	229, 235, 397
BpiI	GAAGAC	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	88
Bpu14I	TTCGAA	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	576
Bsa29I	ATCGAT	1 cut(s)	340
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
BseCI	ATCGAT	1 cut(s)	340
BseGI	GGATG	4 cut(s)	81, 139, 375, 433
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	398
BseXI	GCAGC	2 cut(s)	235, 676
BshFI	GGCC	1 cut(s)	754
BshVI	ATCGAT	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	1 cut(s)	575
BslFI	GGGAC	2 cut(s)	49, 484
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmFI	GGGAC	2 cut(s)	49, 484
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	754
Bsp119I	TTCGAA	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	78
Bsp143I	GATC	2 cut(s)	92, 553
BspANI	GGCC	1 cut(s)	754
BspCNI	CTCAG	1 cut(s)	397
BspDI	ATCGAT	1 cut(s)	340
BspLI	GGNNCC	1 cut(s)	646
BspPI	GGATC	1 cut(s)	100
BspT104I	TTCGAA	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	78
BssMI	GATC	2 cut(s)	92, 553
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	3 cut(s)	198, 224, 491
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstAUI	TGTACA	1 cut(s)	78
BstBI	TTCGAA	1 cut(s)	119
BstDEI	CTNAG	2 cut(s)	88, 384
BstF5I	GGATG	4 cut(s)	81, 139, 375, 433
BstKTI	GATC	2 cut(s)	95, 556
BstMBI	GATC	2 cut(s)	92, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	574
BstV1I	GCAGC	2 cut(s)	235, 676
BstV2I	GAAGAC	1 cut(s)	440
BstX2I	RGATCY	1 cut(s)	92
BstXI	CCANNNNNNTGG	1 cut(s)	641
BstYI	RGATCY	1 cut(s)	92
Bsu15I	ATCGAT	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	1 cut(s)	754
BsuTUI	ATCGAT	1 cut(s)	340
BtgZI	GCGATG	2 cut(s)	283, 377
BtsCI	GGATG	4 cut(s)	81, 139, 375, 433
CaiI	CAGNNNCTG	1 cut(s)	248
ClaI	ATCGAT	1 cut(s)	340
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	620
CviJI	RGCY	8 cut(s)	200, 284, 422, 512, 571, 667, 731, 754
CviKI_1	RGCY	8 cut(s)	200, 284, 422, 512, 571, 667, 731, 754
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	88, 384
DpnI	GATC	2 cut(s)	94, 555
DpnII	GATC	2 cut(s)	92, 553
EaeI	YGGCCR	1 cut(s)	752
Eam1104I	CTCTTC	3 cut(s)	198, 224, 491
EarI	CTCTTC	3 cut(s)	198, 224, 491
Ecl136II	GAGCTC	1 cut(s)	422
Eco24I	GRGCYC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	422
Eco57I	CTGAAG	2 cut(s)	179, 583
EcoICRI	GAGCTC	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	424
FaeI	CATG	1 cut(s)	623
FaqI	GGGAC	2 cut(s)	49, 484
FatI	CATG	1 cut(s)	619
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	249, 665
FokI	GGATG	4 cut(s)	88, 146, 362, 420
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	2 cut(s)	249, 665
FspBI	CTAG	2 cut(s)	285, 440
GluI	GCNGC	2 cut(s)	249, 665
HaeIII	GGCC	1 cut(s)	754
HapII	CCGG	1 cut(s)	575
Hin1II	CATG	1 cut(s)	623
HinfI	GANTC	4 cut(s)	49, 142, 190, 691
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	2 cut(s)	563, 628
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	2 cut(s)	13, 223
Hpy8I	GTNNAC	2 cut(s)	563, 628
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	437, 538
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4V	TGCA	3 cut(s)	115, 242, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	2 cut(s)	88, 384
Hsp92II	CATG	1 cut(s)	623
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	2 cut(s)	92, 553
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	8 cut(s)	17, 38, 57, 182, 216, 266, 477, 588
Lsp1109I	GCAGC	2 cut(s)	235, 676
LweI	GCATC	3 cut(s)	229, 235, 397
MaeI	CTAG	2 cut(s)	285, 440
MalI	GATC	2 cut(s)	94, 555
MboI	GATC	2 cut(s)	92, 553
MflI	RGATCY	1 cut(s)	92
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	3 cut(s)	26, 263, 312
MlyI	GAGTC	1 cut(s)	184
MnlI	CCTC	4 cut(s)	124, 362, 494, 731
MroXI	GAANNNNTTC	1 cut(s)	447
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	1 cut(s)	576
Mva1269I	GAATGC	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	248
NciI	CCSGG	1 cut(s)	576
NdeII	GATC	2 cut(s)	92, 553
NlaIII	CATG	1 cut(s)	623
NlaIV	GGNNCC	1 cut(s)	646
NmeAIII	GCCGAG	1 cut(s)	675
NspV	TTCGAA	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	115
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	49, 142, 691
PfoI	TCCNGGA	1 cut(s)	574
PkrI	GCNGC	2 cut(s)	250, 666
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	424
PspN4I	GGNNCC	1 cut(s)	646
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	92
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
RseI	CAYNNNNRTG	1 cut(s)	302
SacI	GAGCTC	1 cut(s)	424
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	2 cut(s)	249, 665
Sau3AI	GATC	2 cut(s)	92, 553
SchI	GAGTC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	576
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	3 cut(s)	354, 424, 448
SfaNI	GCATC	3 cut(s)	229, 235, 397
SfuI	TTCGAA	1 cut(s)	119
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	26, 263, 312
SspI	AATATT	1 cut(s)	329
SspMI	CTAG	2 cut(s)	285, 440
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	547
TaqI	TCGA	2 cut(s)	119, 340
TasI	AATT	3 cut(s)	26, 263, 312
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	3 cut(s)	49, 142, 691
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseI	GCWGC	2 cut(s)	248, 664
TspDTI	ATGAA	4 cut(s)	39, 322, 326, 705
TspGWI	ACGGA	1 cut(s)	199
XapI	RAATTY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	2 cut(s)	277, 638
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	2 cut(s)	285, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.