Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

17332126 .. 17332507

Gene Structure 382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG193600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGAGAACAAGTTCCTCTACAAGCACATCCACTCCCAGCATCACGTACAGGCTTGTAGCTCCGTATGCATATGCAGCATTGTATGGGCGGAGCCGTCAGCTTCTTGCTGTCAGGCATATCTCCGTAGACTTCGATTTTCTTCCTCTCATTTGCAACCATCAAGGCAGTGGACGACCACTCCGAAACAACAGCTTGTATCATGATGTGCACCGCCAGCTTTCCGGGACCAAGTACAACTTCTCTCAGCCCTTCTTTGTGGCTTGGGATAGGATACTTGGTACCTACCACATGCCATCATCTGCTGAAGACGAGCTCAACAAGGAGGCCAAGAGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

112

Amino Acids

12.74

Weight (kDa)

9.61

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	278
AccI	GTMKAC	1 cut(s)	126
AciI	CCGC	2 cut(s)	88, 211
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	3 cut(s)	47, 233, 280
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	5 cut(s)	59, 100, 192, 217, 313
AluI	AGCT	5 cut(s)	59, 100, 192, 217, 313
Alw21I	GWGCWC	2 cut(s)	210, 315
Alw44I	GTGCAC	1 cut(s)	206
AoxI	GGCC	1 cut(s)	324
ApaLI	GTGCAC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	225
BaeGI	GKGCMC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	278
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	2 cut(s)	210, 315
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	165, 301
BceAI	ACGGC	1 cut(s)	78
BciVI	GTATCC	1 cut(s)	264
BcnI	CCSGG	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	3 cut(s)	92, 226, 280
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	45
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 162, 192
BseGI	GGATG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	257
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	35
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	278
BsiHKAI	GWGCWC	2 cut(s)	210, 315
BsiSI	CCGG	1 cut(s)	222
BslFI	GGGAC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	210, 315
BspACI	CCGC	2 cut(s)	88, 211
BspANI	GGCC	1 cut(s)	326
BspCNI	CTCAG	1 cut(s)	256
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	3 cut(s)	92, 226, 280
BspT107I	GGYRCC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	215
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 74, 214
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	221
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	312
BsuI	GTATCC	1 cut(s)	264
BsuRI	GGCC	1 cut(s)	326
BtsCI	GGATG	1 cut(s)	26
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	1 cut(s)	215
CciI	TCATGA	1 cut(s)	199
Cfr13I	GGNCC	1 cut(s)	225
Csp6I	GTAC	3 cut(s)	46, 232, 279
CviAII	CATG	2 cut(s)	200, 289
CviQI	GTAC	3 cut(s)	46, 232, 279
DdeI	CTNAG	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	103
Ecl136II	GAGCTC	1 cut(s)	313
Eco24I	GRGCYC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	313
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	315
FaeI	CATG	2 cut(s)	203, 292
FaiI	YATR	7 cut(s)	66, 70, 72, 84, 117, 201, 290
FalI	AAGNNNNNCTT	2 cut(s)	221, 253
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	2 cut(s)	199, 288
FauNDI	CATATG	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	13
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	1 cut(s)	222
Hin1II	CATG	2 cut(s)	203, 292
HpaII	CCGG	1 cut(s)	222
Hpy166II	GTNNAC	3 cut(s)	127, 170, 208
Hpy188I	TCNGA	1 cut(s)	182
Hpy188III	TCNNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	127, 170, 208
HpyAV	CCTTC	1 cut(s)	259
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	4 cut(s)	68, 74, 153, 208
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 74, 214
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	44
Hsp92II	CATG	2 cut(s)	203, 292
KpnI	GGTACC	1 cut(s)	282
LmnI	GCTCC	2 cut(s)	64, 90
LpnPI	CCDG	5 cut(s)	34, 49, 97, 227, 235
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	48
MaeII	ACGT	1 cut(s)	44
MboII	GAAGA	2 cut(s)	131, 317
MhlI	GDGCHC	2 cut(s)	210, 315
MnlI	CCTC	3 cut(s)	25, 153, 316
Mph1103I	ATGCAT	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	10
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	3 cut(s)	65, 74, 214
NciI	CCSGG	1 cut(s)	223
NdeI	CATATG	1 cut(s)	70
NlaIII	CATG	2 cut(s)	203, 292
NlaIV	GGNNCC	3 cut(s)	92, 226, 280
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	292
PagI	TCATGA	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	10
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	45
Psp124BI	GAGCTC	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	35
PspN4I	GGNNCC	3 cut(s)	92, 226, 280
PspPI	GGNCC	1 cut(s)	225
RsaI	GTAC	3 cut(s)	47, 233, 280
RsaNI	GTAC	3 cut(s)	46, 232, 279
SacI	GAGCTC	1 cut(s)	315
SatI	GCNGC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	223
SduI	GDGCHC	2 cut(s)	210, 315
SetI	ASST	7 cut(s)	47, 61, 102, 194, 219, 284, 315
SfaNI	GCATC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	225
SsiI	CCGC	2 cut(s)	88, 211
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	221
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	132
TatI	WGTACW	1 cut(s)	231
TscAI	CASTG	1 cut(s)	172
TseI	GCWGC	1 cut(s)	74
TspGWI	ACGGA	2 cut(s)	51, 112
TspRI	CASTG	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	225
XceI	RCATGY	1 cut(s)	292
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	10
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.