FvH4_2g12700

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001109
Physical Location & Seq
Forward (+)
11171889 .. 11176288
4400 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12700.t2

Sequence Viewer

Length: 783 bp
ATGGTGTTTTGGGAAGGGTATGTGAGTGATGAGGCAATGGGGACCTTTGCACCAATTGTGGTTTACTGGTTGTATGCTGGGATTTACCAGCTGTTGCCGCCTTTGGACAATTACCGGTTGCACACTCGAAGAGAGGAGGATGAGAAGAACTCGGTGCCCCTTCCCTCTGTCGTCCGGGGAGTATTGCTTCAACAGCTAGCTCAGGCTACTGTAGCTCAGGGGCTCTTTGTGTTAACTTTAAAGGCCAATACATCTGGTATCACAATTCAGCCGTCCATCCTTGTCCAGATTGTGCAGATTGTTGTTGCAATGCTAGTCATGGACACATGGCAATACTTTGTGCACCGCTACATGCATCAGAACAAGTTCTTGTATCGACATGTTCACTCTCAGCACCACAGACTTGTTGTTCCCTACGCAATTGGAGCCCTTTATAACCACCCACTTGAGGGTCTTTTGCTTGACACTTTTGGTGGGGCTCTCTCTTTTCTAGTCTCGGGAATGACTGCACGGACGGCTGTTACATTCTTCTGCTTTGCTGTGATTAAAACGGTAGATGATCACTGTGGACTTTGGTTGCCTTATAACGTCTTCCACACTTTCTTCCAGAACAATACTGCTTATCATGACATTCATCATCAACTTCAAGGCTTGAAGTATAACTATTCTCAGCCATTCTTCCCGATATGGGATAAGATTTTTGGAACTTACATGCCTTACAGTCTTGTAAAGAGACCTGAAGGGGGTTTTGAAGCGAAGGCAATGAAAGCAGCGAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 map00600 map01100
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

261

Amino Acids

29.84

Weight (kDa)

7.84

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 101 - 236 2.6e-27 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 435, 585
AccB1I GGYRCC 1 cut(s) 154
AciI CCGC 2 cut(s) 98, 346
AcuI CTGAAG 1 cut(s) 759
AfiI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
AflIII ACRYGT 1 cut(s) 379
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 4 cut(s) 191, 647, 655, 752
AluBI AGCT 4 cut(s) 91, 196, 200, 215
AluI AGCT 4 cut(s) 91, 196, 200, 215
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 499, 727
Alw44I GTGCAC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 496
AoxI GGCC 1 cut(s) 243
ApaLI GTGCAC 1 cut(s) 341
ApeKI GCWGC 1 cut(s) 770
AsiGI ACCGGT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 365
AspS9I GGNCC 1 cut(s) 42
AsuC2I CCSGG 1 cut(s) 176
AsuNHI GCTAGC 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 496
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 2 cut(s) 159, 345
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 3 cut(s) 225, 430, 481
BbsI GAAGAC 1 cut(s) 583
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 1 cut(s) 284
BceAI ACGGC 2 cut(s) 256, 531
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 499, 727
BfaI CTAG 4 cut(s) 197, 314, 491, 781
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 2 cut(s) 98, 771
BlsI GCNGC 2 cut(s) 99, 772
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 3 cut(s) 43, 156, 427
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 1 cut(s) 364
BmtI GCTAGC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 583
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bpu10I CCTNAGC 2 cut(s) 201, 216
BpuEI CTTGAG 1 cut(s) 467
BpuMI CCSGG 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 727
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 71
Bse3DI GCAATG 3 cut(s) 42, 315, 768
BseDI CCNNGG 1 cut(s) 175
BseGI GGATG 2 cut(s) 145, 276
BseLI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
BseMI GCAATG 3 cut(s) 42, 315, 768
BseMII CTCAG 4 cut(s) 215, 230, 404, 683
BseNI ACTGG 1 cut(s) 71
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 2 cut(s) 159, 345
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 2 cut(s) 314, 492
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 1 cut(s) 154
BshTI ACCGGT 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 496
BsiSI CCGG 2 cut(s) 115, 175
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
BsmAI GTCTC 2 cut(s) 499, 727
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 1 cut(s) 245
Bso31I GGTCTC 1 cut(s) 727
BsoBI CYCGRG 1 cut(s) 496
Bsp1286I GDGCHC 5 cut(s) 159, 225, 345, 430, 481
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 2 cut(s) 98, 346
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 4 cut(s) 214, 229, 403, 682
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 3 cut(s) 43, 156, 427
BspOI GCTAGC 1 cut(s) 200
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 727
BsrDI GCAATG 3 cut(s) 42, 315, 768
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 114
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 1 cut(s) 559
Bst4CI ACNGT 4 cut(s) 211, 553, 566, 722
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 4 cut(s) 201, 216, 390, 669
BstF5I GGATG 2 cut(s) 145, 276
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 499, 727
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 6 cut(s) 97, 193, 212, 425, 515, 767
BstNSI RCATGY 3 cut(s) 355, 383, 715
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 2 cut(s) 159, 345
BstV2I GAAGAC 1 cut(s) 583
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 2 cut(s) 145, 276
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 42
CspAI ACCGGT 1 cut(s) 114
CviAII CATG 6 cut(s) 319, 327, 352, 380, 626, 712
DdeI CTNAG 4 cut(s) 201, 216, 390, 669
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
DraI TTTAAA 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco24I GRGCYC 3 cut(s) 225, 430, 481
Eco31I GGTCTC 1 cut(s) 727
Eco47I GGWCC 1 cut(s) 42
Eco57I CTGAAG 1 cut(s) 759
Eco88I CYCGRG 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 42
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 3 cut(s) 225, 430, 481
FaeI CATG 6 cut(s) 322, 330, 355, 383, 629, 715
FaqI GGGAC 1 cut(s) 55
FatI CATG 6 cut(s) 318, 326, 351, 379, 625, 711
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 98, 771
FokI GGATG 2 cut(s) 152, 263
FriOI GRGCYC 3 cut(s) 225, 430, 481
Fsp4HI GCNGC 2 cut(s) 98, 771
FspBI CTAG 4 cut(s) 197, 314, 491, 781
GluI GCNGC 2 cut(s) 98, 771
GsaI CCCAGC 1 cut(s) 81
HaeIII GGCC 1 cut(s) 245
HapII CCGG 2 cut(s) 115, 175
Hin1II CATG 6 cut(s) 322, 330, 355, 383, 629, 715
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 2 cut(s) 115, 175
Hpy166II GTNNAC 5 cut(s) 64, 234, 343, 385, 569
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 5 cut(s) 286, 498, 607, 626, 682
Hpy8I GTNNAC 5 cut(s) 64, 234, 343, 385, 569
HpyAV CCTTC 4 cut(s) 8, 170, 734, 751
HpyCH4III ACNGT 4 cut(s) 211, 553, 566, 722
HpyCH4IV ACGT 1 cut(s) 588
HpyCH4V TGCA 7 cut(s) 50, 121, 295, 308, 343, 355, 509
HpyF10VI GCNNNNNNNGC 6 cut(s) 97, 193, 212, 425, 515, 767
HpyF3I CTNAG 4 cut(s) 201, 216, 390, 669
HpySE526I ACGT 1 cut(s) 588
Hsp92II CATG 6 cut(s) 322, 330, 355, 383, 629, 715
Ksp22I TGATCA 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 425
LweI GCATC 1 cut(s) 364
MaeI CTAG 4 cut(s) 197, 314, 491, 781
MaeII ACGT 1 cut(s) 588
MaeIII GTNAC 1 cut(s) 520
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 6 cut(s) 141, 157, 520, 583, 595, 670
MfeI CAATTG 2 cut(s) 54, 420
MhlI GDGCHC 5 cut(s) 159, 225, 345, 430, 481
MluCI AATT 4 cut(s) 54, 109, 264, 420
MnlI CCTC 5 cut(s) 25, 127, 130, 175, 442
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 3 cut(s) 233, 239, 546
MspA1I CMGCKG 1 cut(s) 91
MspI CCGG 2 cut(s) 115, 175
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 2 cut(s) 54, 420
MwoI GCNNNNNNNGC 6 cut(s) 97, 193, 212, 425, 515, 767
NciI CCSGG 1 cut(s) 176
NdeII GATC 1 cut(s) 559
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 6 cut(s) 322, 330, 355, 383, 629, 715
NlaIV GGNNCC 3 cut(s) 43, 156, 427
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 3 cut(s) 355, 383, 715
PagI TCATGA 1 cut(s) 625
PciI ACATGT 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 365
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 2 cut(s) 99, 772
PpuMI RGGWCCY 1 cut(s) 42
PscI ACATGT 1 cut(s) 379
PsiI TTATAA 2 cut(s) 435, 585
Psp5II RGGWCCY 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 77
PspN4I GGNNCC 3 cut(s) 43, 156, 427
PspPI GGNCC 1 cut(s) 42
PspPPI RGGWCCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 91
SaqAI TTAA 3 cut(s) 233, 239, 546
SatI GCNGC 2 cut(s) 98, 771
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 5 cut(s) 159, 225, 345, 430, 481
SetI ASST 7 cut(s) 47, 93, 198, 202, 217, 591, 739
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 54, 109, 264, 420
SsiI CCGC 2 cut(s) 98, 346
SspMI CTAG 4 cut(s) 197, 314, 491, 781
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 4 cut(s) 211, 553, 566, 722
TaiI ACGT 1 cut(s) 591
TaqI TCGA 2 cut(s) 127, 376
TasI AATT 4 cut(s) 54, 109, 264, 420
TauI GCSGC 1 cut(s) 100
Tru1I TTAA 3 cut(s) 233, 239, 546
Tru9I TTAA 3 cut(s) 233, 239, 546
TscAI CASTG 1 cut(s) 569
TseI GCWGC 1 cut(s) 770
TspDTI ATGAA 2 cut(s) 623, 779
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 1 cut(s) 569
VneI GTGCAC 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 42
XceI RCATGY 3 cut(s) 355, 383, 715
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 4 cut(s) 197, 314, 491, 781
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.