Rroxscaffold_7G00195320

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001109
Physical Location & Seq
Reverse (-)
37556307 .. 37560092
3786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195320.1

Sequence Viewer

Length: 783 bp
ATGGTGTTTTGGGAAGGGTATGTGAGTGATGAGGCGATGGGGACCTTTGCACCAATTGTGGTTTACTGGTTGTATGCGGGGTTTTACCAGTTGTTGCCGCCGTTGGACAGTTACCGGTTGCACACTCGAAAAGAGGAGGATGAGAAGAACTCGGTTCCCCTTCCCTCTGTTGTGAAGGGTGTTTTGCTTCAACAGCTTGTTCAGGCCACCGTTGCTCAGGGGCTCTTTGTGTTAACCAAAAAGGCCAATGCATTTGGTGTCACAATTCAGCCATCCGTTCTTGTCCAGATTGTGCAGATTGTTGTTGCAATGCTAGTCATGGACACATGGCAATACTTTGTGCACCGCTACATGCATCAAAACAAGTTCTTGTACCGCCATGTCCACTCTCAGCACCACAGACTTGTTGTTCCCTACGCAATTGGAGCCCTTTATAACCACCCACTTGAGGGTCTCTTACTTGACACTTTCGGCGGGGCTATCTCTTTTCTAGTCTCGGGAATGACCGCACGGACAGCTGTTATATTCTTCTGCTTTGCTGTGATTAAAACAGTTGATGATCACTGTGGACTTTGGTTGCCTGGTAACATCTTCCACATTTTCTTCCAGAACAATACTGCTTATCATGACATTCATCATCAACTTCAGGGCTTGAAGTATAACTATTCTCAGCCATTCTTCCCGATATGGGATAAAATTTTTGGAACTTACATGCCTTACAGTCTTGTAAAGAGACCTGAAGGGGGTTTTGAAGCGAAGGCAATGAAAGCAATGAAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 map00600 map01100
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

260

Amino Acids

29.83

Weight (kDa)

8.4

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 101 - 236 8.1e-27 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AciI CCGC 6 cut(s) 77, 98, 346, 376, 474, 507
AcsI RAATTY 1 cut(s) 696
AcuI CTGAAG 2 cut(s) 629, 759
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 3 cut(s) 191, 655, 752
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 2 cut(s) 196, 518
AluI AGCT 2 cut(s) 196, 518
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 3 cut(s) 458, 499, 727
Alw44I GTGCAC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 496
AoxI GGCC 2 cut(s) 204, 243
ApaLI GTGCAC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 696
AsiGI ACCGGT 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 42
AvaI CYCGRG 1 cut(s) 496
AvaII GGWCC 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 345
BanII GRGCYC 2 cut(s) 225, 430
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 2 cut(s) 31, 280
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 582
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 3 cut(s) 458, 499, 727
BfaI CTAG 3 cut(s) 314, 491, 781
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 582
Bme18I GGWCC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 496
BmgT120I GGNCC 1 cut(s) 42
BmiI GGNNCC 3 cut(s) 43, 156, 427
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bpu10I CCTNAGC 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 467
BsaI GGTCTC 2 cut(s) 458, 727
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 71, 88
Bse3DI GCAATG 3 cut(s) 315, 768, 777
BseBI CCWGG 1 cut(s) 582
BseGI GGATG 2 cut(s) 145, 272
BseLI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
BseMI GCAATG 3 cut(s) 315, 768, 777
BseMII CTCAG 3 cut(s) 230, 404, 683
BseNI ACTGG 2 cut(s) 71, 88
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 314
BshFI GGCC 2 cut(s) 206, 245
BshTI ACCGGT 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 345
BsiHKCI CYCGRG 1 cut(s) 496
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
BsmAI GTCTC 3 cut(s) 458, 499, 727
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 2 cut(s) 206, 245
Bso31I GGTCTC 2 cut(s) 458, 727
BsoBI CYCGRG 1 cut(s) 496
Bsp1286I GDGCHC 3 cut(s) 225, 345, 430
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 6 cut(s) 77, 98, 346, 376, 474, 507
BspANI GGCC 2 cut(s) 206, 245
BspCNI CTCAG 3 cut(s) 229, 403, 682
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 3 cut(s) 43, 156, 427
BspTNI GGTCTC 2 cut(s) 458, 727
BsrDI GCAATG 3 cut(s) 315, 768, 777
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 2 cut(s) 71, 88
BssAI RCCGGY 1 cut(s) 114
BssMI GATC 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 5 cut(s) 110, 211, 553, 566, 722
BstDEI CTNAG 3 cut(s) 216, 390, 669
BstF5I GGATG 2 cut(s) 145, 272
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 3 cut(s) 458, 499, 727
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 5 cut(s) 193, 212, 425, 515, 767
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 2 cut(s) 355, 715
BstSCI CCNGG 1 cut(s) 580
BstSLI GKGCMC 1 cut(s) 345
BsuRI GGCC 2 cut(s) 206, 245
BtgZI GCGATG 1 cut(s) 50
BtsCI GGATG 2 cut(s) 145, 272
BtsIMutI CAGTG 1 cut(s) 562
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 42
Csp6I GTAC 1 cut(s) 373
CspAI ACCGGT 1 cut(s) 114
CviAII CATG 6 cut(s) 319, 327, 352, 380, 626, 712
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 3 cut(s) 216, 390, 669
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
Eco24I GRGCYC 2 cut(s) 225, 430
Eco31I GGTCTC 2 cut(s) 458, 727
Eco47I GGWCC 1 cut(s) 42
Eco57I CTGAAG 2 cut(s) 629, 759
Eco88I CYCGRG 1 cut(s) 496
EcoO109I RGGNCCY 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 580
EcoT22I ATGCAT 2 cut(s) 253, 357
EcoT38I GRGCYC 2 cut(s) 225, 430
FaeI CATG 6 cut(s) 322, 330, 355, 383, 629, 715
FaqI GGGAC 1 cut(s) 55
FatI CATG 6 cut(s) 318, 326, 351, 379, 625, 711
FauI CCCGC 2 cut(s) 70, 467
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 2 cut(s) 152, 259
FriOI GRGCYC 2 cut(s) 225, 430
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 3 cut(s) 314, 491, 781
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 206, 245
HapII CCGG 1 cut(s) 115
Hin1II CATG 6 cut(s) 322, 330, 355, 383, 629, 715
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 1 cut(s) 115
Hpy166II GTNNAC 5 cut(s) 64, 234, 343, 385, 569
Hpy188III TCNNGA 5 cut(s) 286, 498, 607, 626, 682
Hpy8I GTNNAC 5 cut(s) 64, 234, 343, 385, 569
HpyAV CCTTC 5 cut(s) 8, 169, 170, 734, 751
HpyCH4III ACNGT 5 cut(s) 110, 211, 553, 566, 722
HpyCH4V TGCA 7 cut(s) 50, 121, 251, 295, 308, 343, 355
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 212, 425, 515, 767
HpyF3I CTNAG 3 cut(s) 216, 390, 669
Hsp92II CATG 6 cut(s) 322, 330, 355, 383, 629, 715
Ksp22I TGATCA 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 425
LweI GCATC 1 cut(s) 364
MaeI CTAG 3 cut(s) 314, 491, 781
MaeIII GTNAC 3 cut(s) 110, 259, 584
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 5 cut(s) 157, 520, 583, 595, 670
MfeI CAATTG 2 cut(s) 54, 420
MhlI GDGCHC 3 cut(s) 225, 345, 430
MluCI AATT 4 cut(s) 54, 264, 420, 696
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 5 cut(s) 25, 127, 130, 175, 442
Mph1103I ATGCAT 2 cut(s) 253, 357
MseI TTAA 2 cut(s) 233, 546
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 582
MunI CAATTG 2 cut(s) 54, 420
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 5 cut(s) 193, 212, 425, 515, 767
NdeII GATC 1 cut(s) 559
NlaIII CATG 6 cut(s) 322, 330, 355, 383, 629, 715
NlaIV GGNNCC 3 cut(s) 43, 156, 427
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 2 cut(s) 253, 357
NspI RCATGY 2 cut(s) 355, 715
PagI TCATGA 1 cut(s) 625
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 1 cut(s) 99
PpuMI RGGWCCY 1 cut(s) 42
PsiI TTATAA 1 cut(s) 435
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 3 cut(s) 43, 156, 427
PspPI GGNCC 1 cut(s) 42
PspPPI RGGWCCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 233, 546
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 559
Sau96I GGNCC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 3 cut(s) 225, 345, 430
SetI ASST 4 cut(s) 47, 198, 520, 739
SfaNI GCATC 1 cut(s) 364
SinI GGWCC 1 cut(s) 42
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 54, 264, 420, 696
SsiI CCGC 6 cut(s) 77, 98, 346, 376, 474, 507
SspMI CTAG 3 cut(s) 314, 491, 781
StyD4I CCNGG 1 cut(s) 580
TaaI ACNGT 5 cut(s) 110, 211, 553, 566, 722
TaqI TCGA 1 cut(s) 127
TasI AATT 4 cut(s) 54, 264, 420, 696
TauI GCSGC 1 cut(s) 100
Tru1I TTAA 2 cut(s) 233, 546
Tru9I TTAA 2 cut(s) 233, 546
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 623, 779
TspGWI ACGGA 2 cut(s) 265, 526
TspRI CASTG 1 cut(s) 569
VneI GTGCAC 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 42
XapI RAATTY 1 cut(s) 696
XceI RCATGY 2 cut(s) 355, 715
XspI CTAG 3 cut(s) 314, 491, 781
Zsp2I ATGCAT 2 cut(s) 253, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.