Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001030.1

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

100305 .. 102460

Gene Structure 2156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001030.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgagaatagttgcttctgatgaagtactgggaacgtttatctctattatagtgtactggctgtacccagccctcattgtatctatggaaaaatcatttccgaaatacaaaattcaaagcgtagaggagcaagataagagaaaccaccttgtttccaaagggacagccatcaaaggcgtcgtcctccaacaagtcctgcagcctctcataattgccacactcttgtatattctaacaaaccgtgacggtgatgcgactgcttctgtgactacttatactacaggtcaaaatgacgacggtgatgatggaattgggtcaatgatcatgatgctggccacaactatggtccagtttctgatagccatggtggtgttggatacgtggcagtactttgtgcagctagcattgtacaaccacccgtttgagcgtattctcgtggacactatgggcggagccgtcagcttcttgctgtcgggcatgtctccgcggacttcgattttcttcttctcatttgcaaccatcaaggcattggacgaccactccggtgtatgtaactttccatggcacccgtttcatgatctgttcagaaacaacagcttgtatcatgatgtgcaccaccagctttcggggaccaagttcaacttctctcagcccttctttgtgttttgggataggatacttggtacctaccacatgccatcatctgctgaagacgagctcaacaaggaggccaagaataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

247

Amino Acids

28.02

Weight (kDa)

5.8

Isoelectric Point (pI)

29.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	683
AccB1I	GGYRCC	2 cut(s)	564, 683
AccII	CGCG	1 cut(s)	487
AciI	CCGC	3 cut(s)	450, 485, 487
AclI	AACGTT	1 cut(s)	35
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	729
AcyI	GRCGYC	1 cut(s)	177
AfaI	GTAC	6 cut(s)	27, 56, 65, 389, 410, 685
AfiI	CCNNNNNNNGG	1 cut(s)	625
AgsI	TTSAA	2 cut(s)	116, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AleI	CACNNNNGTG	1 cut(s)	543
AluBI	AGCT	5 cut(s)	400, 462, 597, 622, 718
AluI	AGCT	5 cut(s)	400, 462, 597, 622, 718
Alw21I	GWGCWC	2 cut(s)	615, 720
Alw26I	GTCTC	1 cut(s)	486
Alw44I	GTGCAC	1 cut(s)	611
AlwNI	CAGNNNCTG	1 cut(s)	355
AoxI	GGCC	2 cut(s)	333, 729
ApaLI	GTGCAC	1 cut(s)	611
ApeKI	GCWGC	2 cut(s)	199, 397
ApoI	RAATTY	1 cut(s)	111
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp718I	GGTACC	1 cut(s)	683
AspS9I	GGNCC	2 cut(s)	346, 630
AsuHPI	GGTGA	2 cut(s)	260, 311
AsuNHI	GCTAGC	1 cut(s)	400
AvaII	GGWCC	2 cut(s)	346, 630
BaeGI	GKGCMC	1 cut(s)	615
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	2 cut(s)	564, 683
BanII	GRGCYC	1 cut(s)	720
BauI	CACGAG	1 cut(s)	434
BbsI	GAAGAC	1 cut(s)	717
Bbv12I	GWGCWC	2 cut(s)	615, 720
BbvI	GCAGC	2 cut(s)	211, 409
BccI	CCATC	4 cut(s)	176, 299, 527, 706
BceAI	ACGGC	1 cut(s)	440
BciVI	GTATCC	2 cut(s)	370, 669
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	2 cut(s)	197, 279
BfuI	GTATCC	2 cut(s)	370, 669
BisI	GCNGC	2 cut(s)	200, 398
BlsI	GCNGC	2 cut(s)	201, 399
BmcAI	AGTACT	2 cut(s)	27, 389
Bme18I	GGWCC	2 cut(s)	346, 630
BmgT120I	GGNCC	2 cut(s)	346, 630
BmiI	GGNNCC	4 cut(s)	454, 566, 631, 685
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	2 cut(s)	241, 318
BmtI	GCTAGC	1 cut(s)	404
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	717
BsaAI	YACGTR	1 cut(s)	381
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	363, 485, 560
BsaWI	WCCGGW	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
Bse1I	ACTGG	3 cut(s)	33, 62, 349
BseDI	CCNNGG	3 cut(s)	363, 485, 560
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	3 cut(s)	33, 62, 349
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	615
BseXI	GCAGC	2 cut(s)	211, 409
BseYI	CCCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	416
Bsh1236I	CGCG	1 cut(s)	487
BshFI	GGCC	2 cut(s)	335, 731
BshNI	GGYRCC	2 cut(s)	564, 683
BsiHKAI	GWGCWC	2 cut(s)	615, 720
BsiSI	CCGG	1 cut(s)	543
BslFI	GGGAC	2 cut(s)	175, 643
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	2 cut(s)	175, 643
BsnI	GGCC	2 cut(s)	335, 731
Bsp1286I	GDGCHC	2 cut(s)	615, 720
Bsp1407I	TGTACA	1 cut(s)	408
Bsp143I	GATC	2 cut(s)	321, 577
Bsp19I	CCATGG	2 cut(s)	363, 560
BspACI	CCGC	3 cut(s)	450, 485, 487
BspANI	GGCC	2 cut(s)	335, 731
BspCNI	CTCAG	1 cut(s)	661
BspFNI	CGCG	1 cut(s)	487
BspHI	TCATGA	3 cut(s)	324, 574, 604
BspLI	GGNNCC	4 cut(s)	454, 566, 631, 685
BspMAI	CTGCAG	1 cut(s)	201
BspOI	GCTAGC	1 cut(s)	404
BspT107I	GGYRCC	2 cut(s)	564, 683
BsrGI	TGTACA	1 cut(s)	408
BsrI	ACTGG	3 cut(s)	33, 62, 349
BssECI	CCNNGG	3 cut(s)	363, 485, 560
BssMI	GATC	2 cut(s)	321, 577
BssNI	GRCGYC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	434
BssT1I	CCWWGG	2 cut(s)	363, 560
Bst2BI	CACGAG	1 cut(s)	434
Bst4CI	ACNGT	3 cut(s)	242, 248, 299
BstACI	GRCGYC	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	408
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	333, 402
BstDEI	CTNAG	1 cut(s)	648
BstDSI	CCRYGG	3 cut(s)	363, 485, 560
BstFNI	CGCG	1 cut(s)	487
BstKTI	GATC	2 cut(s)	324, 580
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	2 cut(s)	321, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	619
BstNSI	RCATGY	2 cut(s)	481, 697
BstSFI	CTRYAG	2 cut(s)	197, 279
BstSLI	GKGCMC	1 cut(s)	615
BstUI	CGCG	1 cut(s)	487
BstV1I	GCAGC	2 cut(s)	211, 409
BstV2I	GAAGAC	1 cut(s)	717
BstXI	CCANNNNNNTGG	1 cut(s)	343
BsuI	GTATCC	2 cut(s)	370, 669
BsuRI	GGCC	2 cut(s)	335, 731
BtgI	CCRYGG	3 cut(s)	363, 485, 560
Cac8I	GCNNGC	2 cut(s)	333, 402
CaiI	CAGNNNCTG	1 cut(s)	355
CciI	TCATGA	3 cut(s)	324, 574, 604
Cfr13I	GGNCC	2 cut(s)	346, 630
Cfr42I	CCGCGG	1 cut(s)	488
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	6 cut(s)	26, 55, 64, 388, 409, 684
CviAII	CATG	7 cut(s)	325, 364, 478, 561, 575, 605, 694
CviQI	GTAC	6 cut(s)	26, 55, 64, 388, 409, 684
DdeI	CTNAG	1 cut(s)	648
DpnI	GATC	2 cut(s)	323, 579
DpnII	GATC	2 cut(s)	321, 577
EaeI	YGGCCR	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	465
Ecl136II	GAGCTC	1 cut(s)	718
Eco130I	CCWWGG	2 cut(s)	363, 560
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	2 cut(s)	346, 630
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	718
EcoT14I	CCWWGG	2 cut(s)	363, 560
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	2 cut(s)	363, 560
FaeI	CATG	7 cut(s)	328, 367, 481, 564, 578, 608, 697
FalI	AAGNNNNNCTT	2 cut(s)	626, 658
FaqI	GGGAC	2 cut(s)	175, 643
FatI	CATG	7 cut(s)	324, 363, 477, 560, 574, 604, 693
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	200, 398
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	2 cut(s)	200, 398
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	2 cut(s)	200, 398
GsaI	CCCAGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	335, 731
HapII	CCGG	1 cut(s)	543
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	7 cut(s)	328, 367, 481, 564, 578, 608, 697
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	2 cut(s)	260, 311
Hpy166II	GTNNAC	3 cut(s)	55, 439, 613
Hpy188I	TCNGA	4 cut(s)	19, 102, 357, 587
Hpy188III	TCNNGA	3 cut(s)	325, 575, 605
Hpy8I	GTNNAC	3 cut(s)	55, 439, 613
Hpy99I	CGWCG	2 cut(s)	182, 299
HpyAV	CCTTC	1 cut(s)	664
HpyCH4III	ACNGT	3 cut(s)	242, 248, 299
HpyCH4IV	ACGT	2 cut(s)	35, 380
HpyCH4V	TGCA	4 cut(s)	199, 397, 515, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	619
HpyF3I	CTNAG	1 cut(s)	648
HpySE526I	ACGT	2 cut(s)	35, 380
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	7 cut(s)	328, 367, 481, 564, 578, 608, 697
KpnI	GGTACC	1 cut(s)	687
Ksp22I	TGATCA	1 cut(s)	321
KspI	CCGCGG	1 cut(s)	488
Kzo9I	GATC	2 cut(s)	321, 577
LmnI	GCTCC	2 cut(s)	127, 452
LpnPI	CCDG	9 cut(s)	14, 43, 81, 209, 267, 317, 362, 556, 632
Lsp1109I	GCAGC	2 cut(s)	211, 409
LweI	GCATC	2 cut(s)	241, 318
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	2 cut(s)	35, 380
MaeIII	GTNAC	3 cut(s)	242, 265, 551
MalI	GATC	2 cut(s)	323, 579
MboI	GATC	2 cut(s)	321, 577
MboII	GAAGA	3 cut(s)	493, 496, 722
MhlI	GDGCHC	2 cut(s)	615, 720
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	3 cut(s)	111, 210, 309
MluNI	TGGCCA	1 cut(s)	335
MmeI	TCCRAC	2 cut(s)	211, 354
MnlI	CCTC	5 cut(s)	83, 118, 194, 213, 721
Mox20I	TGGCCA	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	335
MslI	CAYNNNNRTG	3 cut(s)	341, 368, 543
Msp20I	TGGCCA	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	487
MspI	CCGG	1 cut(s)	543
MvnI	CGCG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	619
NcoI	CCATGG	2 cut(s)	363, 560
NdeII	GATC	2 cut(s)	321, 577
NheI	GCTAGC	1 cut(s)	400
NlaIII	CATG	7 cut(s)	328, 367, 481, 564, 578, 608, 697
NlaIV	GGNNCC	4 cut(s)	454, 566, 631, 685
NmuCI	GTSAC	2 cut(s)	242, 265
NspI	RCATGY	2 cut(s)	481, 697
OliI	CACNNNNGTG	1 cut(s)	543
PagI	TCATGA	3 cut(s)	324, 574, 604
PkrI	GCNGC	2 cut(s)	201, 399
Ppu21I	YACGTR	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	720
Psp1406I	AACGTT	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	67
PspN4I	GGNNCC	4 cut(s)	454, 566, 631, 685
PspPI	GGNCC	2 cut(s)	346, 630
PstI	CTGCAG	1 cut(s)	201
PstNI	CAGNNNCTG	1 cut(s)	355
RsaI	GTAC	6 cut(s)	27, 56, 65, 389, 410, 685
RsaNI	GTAC	6 cut(s)	26, 55, 64, 388, 409, 684
RseI	CAYNNNNRTG	3 cut(s)	341, 368, 543
SacI	GAGCTC	1 cut(s)	720
SacII	CCGCGG	1 cut(s)	488
SatI	GCNGC	2 cut(s)	200, 398
Sau3AI	GATC	2 cut(s)	321, 577
Sau96I	GGNCC	2 cut(s)	346, 630
ScaI	AGTACT	2 cut(s)	27, 389
SduI	GDGCHC	2 cut(s)	615, 720
SfaNI	GCATC	2 cut(s)	241, 318
SfcI	CTRYAG	2 cut(s)	197, 279
Sfr303I	CCGCGG	1 cut(s)	488
SgrBI	CCGCGG	1 cut(s)	488
SinI	GGWCC	2 cut(s)	346, 630
SmiMI	CAYNNNNRTG	3 cut(s)	341, 368, 543
Sse9I	AATT	3 cut(s)	111, 210, 309
SsiI	CCGC	3 cut(s)	450, 485, 487
SspMI	CTAG	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	720
StyI	CCWWGG	2 cut(s)	363, 560
TaaI	ACNGT	3 cut(s)	242, 248, 299
TaiI	ACGT	2 cut(s)	38, 383
TaqI	TCGA	1 cut(s)	494
TasI	AATT	3 cut(s)	111, 210, 309
TatI	WGTACW	4 cut(s)	25, 54, 387, 408
TseFI	GTSAC	2 cut(s)	242, 265
TseI	GCWGC	2 cut(s)	199, 397
Tsp45I	GTSAC	2 cut(s)	242, 265
TspDTI	ATGAA	2 cut(s)	36, 563
VneI	GTGCAC	1 cut(s)	611
VpaK11BI	GGWCC	2 cut(s)	346, 630
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	2 cut(s)	481, 697
XcmI	CCANNNNNNNNNTGG	2 cut(s)	370, 526
XspI	CTAG	1 cut(s)	401
ZrmI	AGTACT	2 cut(s)	27, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.