Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

19478858 .. 19479593

Gene Structure 736 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18068

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGCATATGCAGCTAGCATTGTACAACCACCCGTTTGAGCGTATTCTCGTGGACACTATGGGCGGAGCCGTCAGCTTCTTGCTGTCGGGCATGTCTCCGCGGACTTCGATTTTCTTCTTCTCATTTGCAACCATCAAGGCATTGGACGACCACTCCGGTGTATGTAACTTTCCATGGCACCCGTTTCATGATCTGTTCAGAAACAACAGCTTGTATCATGATGTGCACCACCAGCTTTCGGGGACCAAGTTCAACTTCTCTCAGCCCTTCTTTGTGTTTTGGGATAGGATACTTGGTACCTACCACATGCCATCATCTGCTGAAGACGAGCTCAACAAGGAGGCCAAGAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

118

Amino Acids

13.71

Weight (kDa)

6.48

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	4 - 100	4.8e-13	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	296
AccB1I	GGYRCC	2 cut(s)	177, 296
AccII	CGCG	1 cut(s)	100
AciI	CCGC	3 cut(s)	63, 98, 100
AcuI	CTGAAG	1 cut(s)	342
AfaI	GTAC	2 cut(s)	23, 298
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	253
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	5 cut(s)	13, 75, 210, 235, 331
AluI	AGCT	5 cut(s)	13, 75, 210, 235, 331
Alw21I	GWGCWC	2 cut(s)	228, 333
Alw26I	GTCTC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	224
AoxI	GGCC	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	224
ApeKI	GCWGC	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	243
AsuNHI	GCTAGC	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	243
BaeGI	GKGCMC	1 cut(s)	228
BanI	GGYRCC	2 cut(s)	177, 296
BanII	GRGCYC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	330
Bbv12I	GWGCWC	2 cut(s)	228, 333
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	140, 319
BceAI	ACGGC	1 cut(s)	53
BciVI	GTATCC	1 cut(s)	282
BcoDI	GTCTC	1 cut(s)	99
BfaI	CTAG	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	282
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	4 cut(s)	67, 179, 244, 298
BmtI	GCTAGC	1 cut(s)	17
BpiI	GAAGAC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	98, 173
BsaWI	WCCGGW	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
BseDI	CCNNGG	2 cut(s)	98, 173
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	344
BshNI	GGYRCC	2 cut(s)	177, 296
BsiHKAI	GWGCWC	2 cut(s)	228, 333
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	228, 333
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	190
Bsp19I	CCATGG	1 cut(s)	173
BspACI	CCGC	3 cut(s)	63, 98, 100
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	1 cut(s)	274
BspFNI	CGCG	1 cut(s)	100
BspHI	TCATGA	2 cut(s)	187, 217
BspLI	GGNNCC	4 cut(s)	67, 179, 244, 298
BspOI	GCTAGC	1 cut(s)	17
BspT107I	GGYRCC	2 cut(s)	177, 296
BsrGI	TGTACA	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	98, 173
BssMI	GATC	1 cut(s)	190
BssSI	CACGAG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	173
Bst2BI	CACGAG	1 cut(s)	47
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	261
BstDSI	CCRYGG	2 cut(s)	98, 173
BstFNI	CGCG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 232
BstNSI	RCATGY	2 cut(s)	94, 310
BstSLI	GKGCMC	1 cut(s)	228
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	330
BsuI	GTATCC	1 cut(s)	282
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	2 cut(s)	98, 173
Cac8I	GCNNGC	1 cut(s)	15
CciI	TCATGA	2 cut(s)	187, 217
Cfr13I	GGNCC	1 cut(s)	243
Cfr42I	CCGCGG	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	22, 297
CviAII	CATG	5 cut(s)	91, 174, 188, 218, 307
CviJI	RGCY	8 cut(s)	13, 68, 75, 210, 235, 265, 331, 344
CviKI_1	RGCY	8 cut(s)	13, 68, 75, 210, 235, 265, 331, 344
CviQI	GTAC	2 cut(s)	22, 297
DdeI	CTNAG	1 cut(s)	261
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
EciI	GGCGGA	1 cut(s)	78
Ecl136II	GAGCTC	1 cut(s)	331
Eco130I	CCWWGG	1 cut(s)	173
Eco24I	GRGCYC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	173
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	173
FaeI	CATG	5 cut(s)	94, 177, 191, 221, 310
FaiI	YATR	9 cut(s)	6, 8, 59, 92, 163, 175, 189, 219, 308
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	5 cut(s)	90, 173, 187, 217, 306
FauNDI	CATATG	1 cut(s)	6
Fnu4HI	GCNGC	1 cut(s)	11
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	344
HapII	CCGG	1 cut(s)	156
Hin1II	CATG	5 cut(s)	94, 177, 191, 221, 310
HpaII	CCGG	1 cut(s)	156
Hpy166II	GTNNAC	2 cut(s)	52, 226
Hpy188I	TCNGA	1 cut(s)	200
Hpy188III	TCNNGA	2 cut(s)	188, 218
Hpy8I	GTNNAC	2 cut(s)	52, 226
HpyAV	CCTTC	1 cut(s)	277
HpyCH4V	TGCA	4 cut(s)	4, 10, 128, 226
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 232
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	5 cut(s)	94, 177, 191, 221, 310
KpnI	GGTACC	1 cut(s)	300
KspI	CCGCGG	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	2 cut(s)	169, 245
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	106, 109, 335
MhlI	GDGCHC	2 cut(s)	228, 333
MnlI	CCTC	1 cut(s)	334
Mph1103I	ATGCAT	1 cut(s)	6
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	100
MspI	CCGG	1 cut(s)	156
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	10, 232
NcoI	CCATGG	1 cut(s)	173
NdeI	CATATG	1 cut(s)	6
NdeII	GATC	1 cut(s)	190
NheI	GCTAGC	1 cut(s)	13
NlaIII	CATG	5 cut(s)	94, 177, 191, 221, 310
NlaIV	GGNNCC	4 cut(s)	67, 179, 244, 298
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	94, 310
OliI	CACNNNNGTG	1 cut(s)	156
PagI	TCATGA	2 cut(s)	187, 217
PkrI	GCNGC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	333
PspN4I	GGNNCC	4 cut(s)	67, 179, 244, 298
PspPI	GGNCC	1 cut(s)	243
RsaI	GTAC	2 cut(s)	23, 298
RsaNI	GTAC	2 cut(s)	22, 297
RseI	CAYNNNNRTG	1 cut(s)	156
SacI	GAGCTC	1 cut(s)	333
SacII	CCGCGG	1 cut(s)	101
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	243
SduI	GDGCHC	2 cut(s)	228, 333
SetI	ASST	6 cut(s)	15, 77, 212, 237, 302, 333
Sfr303I	CCGCGG	1 cut(s)	101
SgrBI	CCGCGG	1 cut(s)	101
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	156
SsiI	CCGC	3 cut(s)	63, 98, 100
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	333
StyI	CCWWGG	1 cut(s)	173
TaqI	TCGA	1 cut(s)	107
TatI	WGTACW	1 cut(s)	21
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	176
VneI	GTGCAC	1 cut(s)	224
VpaK11BI	GGWCC	1 cut(s)	243
XceI	RCATGY	2 cut(s)	94, 310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XspI	CTAG	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.