Rorug06G0075300

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001109
Physical Location & Seq
Reverse (-)
10003795 .. 10004167
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0075300.1

Sequence Viewer

Length: 306 bp
ATGATCACCTGGCCGGTGTTTGCAGATCAGTTTTACAATGAGAAGTTGGTAACTCAAATACTTGGGATTGCGGTTGCTGTGGGTTCTCAAAAGTCAGAGGATGGTGGTGTAAAGAGTGAAGCCAGTGTGAAGAGGGAGGCTATAAAGAAGGCTGTAACTGAATTCATGGAGGGTTATGAAGCTGATGGAATGAGACGAAATGCTTTTGCGCTTGGAGAGACGGCAAGGAGGGCAGTTGAGGAAGGTGGCTCATCGTTTTCCGATTTAACTGCTCTAATTGAAGAGTTGAGGTCCCTTGGGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 map00600 map01100
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

101

Amino Acids

10.95

Weight (kDa)

4.85

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 11
AcsI RAATTY 1 cut(s) 161
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 2 cut(s) 187, 212
AoxI GGCC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 1 cut(s) 211
AspS9I GGNCC 1 cut(s) 291
AvaII GGWCC 1 cut(s) 291
BccI CCATC 2 cut(s) 95, 179
BceAI ACGGC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 1 cut(s) 10
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 187, 212
Bme1390I CCNGG 1 cut(s) 10
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 293
BmrFI CCNGG 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 295
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 123
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 123
BshFI GGCC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 187, 212
BsmBI CGTCTC 2 cut(s) 187, 212
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 3, 25
BspACI CCGC 1 cut(s) 71
BspANI GGCC 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 293
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 123
BssAI RCCGGY 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 2 cut(s) 3, 25
BssT1I CCWWGG 1 cut(s) 295
Bst2UI CCWGG 1 cut(s) 10
Bst6I CTCTTC 2 cut(s) 125, 276
BstF5I GGATG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 6, 28
BstMAI GTCTC 2 cut(s) 187, 212
BstMBI GATC 2 cut(s) 3, 25
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 10
BstSCI CCNGG 1 cut(s) 8
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 130
CfoI GCGC 1 cut(s) 211
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 291
CviAII CATG 1 cut(s) 166
CviJI RGCY 6 cut(s) 13, 122, 140, 152, 182, 249
CviKI_1 RGCY 6 cut(s) 13, 122, 140, 152, 182, 249
DpnI GATC 2 cut(s) 5, 27
DpnII GATC 2 cut(s) 3, 25
EaeI YGGCCR 1 cut(s) 11
Eam1104I CTCTTC 2 cut(s) 125, 276
EarI CTCTTC 2 cut(s) 125, 276
Eco130I CCWWGG 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 291
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 8
EcoT14I CCWWGG 1 cut(s) 295
ErhI CCWWGG 1 cut(s) 295
Esp3I CGTCTC 2 cut(s) 187, 212
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 143, 167, 177
FaqI GGGAC 1 cut(s) 277
FatI CATG 1 cut(s) 165
FbaI TGATCA 1 cut(s) 3
FokI GGATG 1 cut(s) 113
GlaI GCGC 1 cut(s) 210
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 1 cut(s) 209
HinP1I GCGC 1 cut(s) 209
HpaII CCGG 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 97, 262
Hpy188III TCNNGA 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 142, 236
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 1 cut(s) 209
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 2 cut(s) 3, 25
LpnPI CCDG 3 cut(s) 22, 27, 136
MaeIII GTNAC 2 cut(s) 49, 154
MalI GATC 2 cut(s) 5, 27
MboI GATC 2 cut(s) 3, 25
MboII GAAGA 2 cut(s) 142, 293
MluCI AATT 2 cut(s) 161, 276
MnlI CCTC 7 cut(s) 91, 126, 130, 163, 222, 232, 282
MseI TTAA 1 cut(s) 266
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 10
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 2 cut(s) 3, 25
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 293
PpuMI RGGWCCY 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PspN4I GGNNCC 1 cut(s) 293
PspPI GGNCC 1 cut(s) 291
PspPPI RGGWCCY 1 cut(s) 291
SaqAI TTAA 1 cut(s) 266
Sau3AI GATC 2 cut(s) 3, 25
Sau96I GGNCC 1 cut(s) 291
ScrFI CCNGG 1 cut(s) 10
SetI ASST 4 cut(s) 11, 184, 247, 293
SgeI CNNG 8 cut(s) 21, 22, 26, 74, 135, 178, 224, 237
SinI GGWCC 1 cut(s) 291
Sse9I AATT 2 cut(s) 161, 276
SsiI CCGC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 8
StyI CCWWGG 1 cut(s) 295
TasI AATT 2 cut(s) 161, 276
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 130
TspDTI ATGAA 2 cut(s) 154, 192
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 1 cut(s) 291
XapI RAATTY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.