Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Reverse (-)

51179078 .. 51179581

Gene Structure 504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003642

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATCATGATGCTTGCCACAACTATGGTCCGGTATATGCATGAGAACAAGTTCCTCTACAAGCACATCCACTCCCAGCATCACAGGCTTGTAGCTCCGTATACATATGCAACATTGTACAACCACCTGTTGGAGGGTCTTCTCGTGGACACTATGGACGGAGCTGTCAGCTTCTTGCTGTTAGGCATATCTCCGCAAACTTCGATTTCCTTCTTCTCATTTGCAACCAGCAAGGCAGTGGACGACCACCCCAGTGTATACAACTTTCCATGGCACCCGTTTCATGTTCTGTTTAGAAACAACAGCTCGTATCATGATGTGCACCACCAGCTTTCCGGGACCAAGTACAACTTCTCTCAGCCCTTCTTTGTGTTTTGGGATAGGATTCTTGGTACCTACCACATGCCATCATCTGCTGAAGACGAGCTCAACAAGGAGGCCAAGAGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

151

Amino Acids

17.52

Weight (kDa)

6.89

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	11 - 132	5.9e-18	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	164
Acc65I	GGTACC	1 cut(s)	392
AccB1I	GGYRCC	2 cut(s)	273, 392
AccB7I	CCANNNNNTGG	1 cut(s)	130
AccI	GTMKAC	2 cut(s)	101, 258
AciI	CCGC	1 cut(s)	194
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	3 cut(s)	119, 347, 394
AfiI	CCNNNNNNNGG	2 cut(s)	130, 133
AjuI	GAANNNNNNNTTGG	2 cut(s)	335, 367
AleI	CACNNNNGTG	1 cut(s)	252
AluBI	AGCT	6 cut(s)	95, 164, 171, 306, 331, 427
AluI	AGCT	6 cut(s)	95, 164, 171, 306, 331, 427
Alw21I	GWGCWC	2 cut(s)	324, 429
Alw44I	GTGCAC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	438
ApaLI	GTGCAC	1 cut(s)	320
Asp700I	GAANNNNTTC	1 cut(s)	50
Asp718I	GGTACC	1 cut(s)	392
AspS9I	GGNCC	2 cut(s)	28, 339
AsuC2I	CCSGG	1 cut(s)	337
AvaII	GGWCC	2 cut(s)	28, 339
BaeGI	GKGCMC	1 cut(s)	324
BanI	GGYRCC	2 cut(s)	273, 392
BanII	GRGCYC	1 cut(s)	429
BauI	CACGAG	1 cut(s)	143
BbsI	GAAGAC	2 cut(s)	131, 426
Bbv12I	GWGCWC	2 cut(s)	324, 429
BccI	CCATC	1 cut(s)	415
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	337
Bme18I	GGWCC	2 cut(s)	28, 339
BmgT120I	GGNCC	2 cut(s)	28, 339
BmiI	GGNNCC	3 cut(s)	275, 340, 394
BmrFI	CCNGG	1 cut(s)	337
BmrI	ACTGGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	88
BmuI	ACTGGG	1 cut(s)	246
BpiI	GAAGAC	2 cut(s)	131, 426
BpuMI	CCSGG	1 cut(s)	337
BsaJI	CCNNGG	1 cut(s)	269
BsaWI	WCCGGW	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	2 cut(s)	130, 133
Bse1I	ACTGG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	269
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	130, 133
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	252
BseSI	GKGCMC	1 cut(s)	324
BseYI	CCCAGC	1 cut(s)	75
BshFI	GGCC	1 cut(s)	440
BshNI	GGYRCC	2 cut(s)	273, 392
BsiHKAI	GWGCWC	2 cut(s)	324, 429
BsiSI	CCGG	2 cut(s)	31, 336
BslFI	GGGAC	1 cut(s)	352
BslI	CCNNNNNNNGG	2 cut(s)	130, 133
BsmFI	GGGAC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	440
Bsp1286I	GDGCHC	2 cut(s)	324, 429
Bsp1407I	TGTACA	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	269
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	1 cut(s)	370
BspHI	TCATGA	2 cut(s)	6, 313
BspLI	GGNNCC	3 cut(s)	275, 340, 394
BspT107I	GGYRCC	2 cut(s)	273, 392
BsrGI	TGTACA	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	252
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	3
BssNAI	GTATAC	2 cut(s)	102, 259
BssSI	CACGAG	1 cut(s)	143
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	2 cut(s)	102, 259
Bst2BI	CACGAG	1 cut(s)	143
BstAUI	TGTACA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	269
BstENI	CCTNNNNNAGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 328
BstNSI	RCATGY	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	335
BstSLI	GKGCMC	1 cut(s)	324
BstV2I	GAAGAC	2 cut(s)	131, 426
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstZ17I	GTATAC	2 cut(s)	102, 259
BsuRI	GGCC	1 cut(s)	440
BtgI	CCRYGG	1 cut(s)	269
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	2 cut(s)	243, 259
Cac8I	GCNNGC	1 cut(s)	15
CciI	TCATGA	2 cut(s)	6, 313
Cfr13I	GGNCC	2 cut(s)	28, 339
Csp6I	GTAC	3 cut(s)	118, 346, 393
CviAII	CATG	6 cut(s)	7, 41, 270, 284, 314, 403
CviJI	RGCY	9 cut(s)	88, 95, 164, 171, 306, 331, 361, 427, 440
CviKI_1	RGCY	9 cut(s)	88, 95, 164, 171, 306, 331, 361, 427, 440
CviQI	GTAC	3 cut(s)	118, 346, 393
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DrdI	GACNNNNNNGTC	1 cut(s)	164
DseDI	GACNNNNNNGTC	1 cut(s)	164
Ecl136II	GAGCTC	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	269
Eco24I	GRGCYC	1 cut(s)	429
Eco47I	GGWCC	2 cut(s)	28, 339
Eco53kI	GAGCTC	1 cut(s)	427
Eco57I	CTGAAG	1 cut(s)	438
EcoICRI	GAGCTC	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	131
EcoT14I	CCWWGG	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	42
EcoT38I	GRGCYC	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	6 cut(s)	10, 44, 273, 287, 317, 406
FalI	AAGNNNNNCTT	2 cut(s)	335, 367
FaqI	GGGAC	1 cut(s)	352
FatI	CATG	6 cut(s)	6, 40, 269, 283, 313, 402
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	101, 258
FokI	GGATG	1 cut(s)	53
FriOI	GRGCYC	1 cut(s)	429
GsaI	CCCAGC	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	440
HapII	CCGG	2 cut(s)	31, 336
Hin1II	CATG	6 cut(s)	10, 44, 273, 287, 317, 406
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	31, 336
Hpy166II	GTNNAC	5 cut(s)	102, 148, 241, 259, 322
Hpy188III	TCNNGA	2 cut(s)	7, 314
Hpy8I	GTNNAC	5 cut(s)	102, 148, 241, 259, 322
HpyAV	CCTTC	2 cut(s)	220, 373
HpyCH4V	TGCA	4 cut(s)	40, 110, 224, 322
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 328
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	6 cut(s)	10, 44, 273, 287, 317, 406
KpnI	GGTACC	1 cut(s)	396
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	100, 161
LpnPI	CCDG	8 cut(s)	44, 70, 89, 140, 241, 265, 341, 349
LweI	GCATC	1 cut(s)	88
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	131, 205, 431
MhlI	GDGCHC	2 cut(s)	324, 429
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	3 cut(s)	65, 127, 430
Mph1103I	ATGCAT	1 cut(s)	42
MroXI	GAANNNNTTC	1 cut(s)	50
MslI	CAYNNNNRTG	2 cut(s)	23, 252
MspI	CCGG	2 cut(s)	31, 336
MspR9I	CCNGG	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	85, 328
NciI	CCSGG	1 cut(s)	337
NcoI	CCATGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	6 cut(s)	10, 44, 273, 287, 317, 406
NlaIV	GGNNCC	3 cut(s)	275, 340, 394
NsiI	ATGCAT	1 cut(s)	42
NspI	RCATGY	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	252
PagI	TCATGA	2 cut(s)	6, 313
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	130
PfoI	TCCNGGA	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	3 cut(s)	275, 340, 394
PspPI	GGNCC	2 cut(s)	28, 339
RsaI	GTAC	3 cut(s)	119, 347, 394
RsaNI	GTAC	3 cut(s)	118, 346, 393
RseI	CAYNNNNRTG	2 cut(s)	23, 252
SacI	GAGCTC	1 cut(s)	429
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	2 cut(s)	28, 339
ScrFI	CCNGG	1 cut(s)	337
SduI	GDGCHC	2 cut(s)	324, 429
SetI	ASST	8 cut(s)	97, 129, 166, 173, 308, 333, 398, 429
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	2 cut(s)	28, 339
SmiMI	CAYNNNNRTG	2 cut(s)	23, 252
SsiI	CCGC	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	429
StyD4I	CCNGG	1 cut(s)	335
StyI	CCWWGG	1 cut(s)	269
TaqI	TCGA	1 cut(s)	203
TatI	WGTACW	2 cut(s)	117, 345
TfiI	GAWTC	1 cut(s)	385
TscAI	CASTG	2 cut(s)	243, 259
TspDTI	ATGAA	1 cut(s)	272
TspGWI	ACGGA	2 cut(s)	87, 174
TspRI	CASTG	2 cut(s)	243, 259
Van91I	CCANNNNNTGG	1 cut(s)	130
VneI	GTGCAC	1 cut(s)	320
VpaK11BI	GGWCC	2 cut(s)	28, 339
XagI	CCTNNNNNAGG	1 cut(s)	131
XceI	RCATGY	1 cut(s)	406
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	2 cut(s)	101, 258
XmnI	GAANNNNTTC	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.