Rorug06G0075400

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001109
Physical Location & Seq
Reverse (-)
10010766 .. 10012081
1316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0075400.1

Sequence Viewer

Length: 1095 bp
ATGGAAACCAAAACTCATCAGCAGCTTCACATTTTCTTCCTTCCATTTATGGGCCAAGGCCACACTTTACCCCTCATAGACATAGCAAAACTATTTGCTTCACGTGGTGAAAAATCAACCATAATAACCACCCCAGCCAATGCACCACTCTTCACCAAAGCAATCCAAACAAGTAGAAGTTTGGGTTTAGAAATCGAACTTCTTCTCATCAAATTCCCATCTACCGAAGTTGGGTTGCCTGAAGGTATTGAAAGTAGAAACTGGGCTGAGAGTGGAGAGATAGCGGAAAAGTTTTTCAAAGCTCTCACTCTGCTTGAACAACAGGTAGAGCAGCTTTTAGACCAACATCATCCTCAGTGTCTTGTTGCAAGCTCTTTGTTTCATTGGGCTACGGATGTTGCTGCAAAGTTTGGGATTCCAAGGCTCATCTTTCAAGGACCTGGTTTTTTCTCCTTGTGTGCTGCAATGAGTGTGACGCTGTACCAACCTCACATGAAGGTTGCATCTGATTCAGAATCTTTTCTTCTTCCTAATCTCCCACATGAGATCAAGGTGACAAGAAACGAACTACCTTCTTTTGTTAAACAAAATGGTGAGACAGAGCTCATGAAGTTGCTCAGAGAATGTAGAGAGACTGAAAAAAGGAGCTATGGGATTGTCATTAATAGCTTCTATGAACTTGAACCTGATTATGCCGATCACTATAGAAAGGCGTTTGGGAGGAAGTCATGGCATATCGGCCCAGTTTCATTATGCAACAAGGCAGAAAAAGATATATCAGCTAGGGGAAGGGAAGGCTCAGTTGATGATGTACATGAGTGCTTGCAATGGCTCAATTCCAAGAAACCCCGTTCGGTTGTTTATGTATGCTTTGGCAGCCTAAACAGTTTCAGTGACTGTCAGCTCTTAGAAATTGCCTTGGGTCTTGAGGCTTCACAACAGCAATTCATTTGGGTTGTCAAGAAGGAAAAGAATGATAAAGAAGAGTGGTTGCCTGAAGGATATGAGCAGAGAATGGAGGGAAGGGGACTTATTATAAGAGGCTGGGCTCCCCAACTACTGATTCTTCAACATGCACTACAACAAAAATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 map00600 map01100
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

364

Amino Acids

41.39

Weight (kDa)

6.33

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1037
AciI CCGC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 212
AcuI CTGAAG 2 cut(s) 261, 1017
AcvI CACGTG 1 cut(s) 104
AdeI CACNNNGTG 1 cut(s) 107
AfaI GTAC 2 cut(s) 482, 813
AfiI CCNNNNNNNGG 2 cut(s) 50, 231
AgsI TTSAA 6 cut(s) 251, 298, 317, 434, 683, 1070
AjnI CCWGG 1 cut(s) 439
AjuI GAANNNNNNNTTGG 2 cut(s) 1047, 1079
AluBI AGCT 9 cut(s) 25, 302, 334, 372, 604, 648, 669, 782, 904
AluI AGCT 9 cut(s) 25, 302, 334, 372, 604, 648, 669, 782, 904
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 2 cut(s) 590, 626
AlwNI CAGNNNCTG 1 cut(s) 897
AoxI GGCC 3 cut(s) 52, 58, 739
ApeKI GCWGC 5 cut(s) 22, 331, 401, 461, 876
ApoI RAATTY 1 cut(s) 212
AseI ATTAAT 1 cut(s) 663
Asp700I GAANNNNTTC 2 cut(s) 201, 519
AspS9I GGNCC 3 cut(s) 52, 437, 740
AsuHPI GGTGA 4 cut(s) 119, 145, 565, 605
AvaII GGWCC 1 cut(s) 437
BanII GRGCYC 2 cut(s) 606, 1051
BbrPI CACGTG 1 cut(s) 104
Bbv12I GWGCWC 1 cut(s) 606
BbvI GCAGC 5 cut(s) 34, 343, 388, 448, 888
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 1 cut(s) 441
BcoDI GTCTC 2 cut(s) 590, 626
BfaI CTAG 1 cut(s) 783
BfmI CTRYAG 1 cut(s) 703
BisI GCNGC 5 cut(s) 23, 332, 402, 462, 877
BlsI GCNGC 5 cut(s) 24, 333, 403, 463, 878
Bme1390I CCNGG 1 cut(s) 441
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 3 cut(s) 52, 437, 740
BmiI GGNNCC 1 cut(s) 1050
BmrFI CCNGG 1 cut(s) 441
BmrI ACTGGG 2 cut(s) 271, 737
BmsI GCATC 1 cut(s) 512
BmuI ACTGGG 2 cut(s) 271, 737
BpuEI CTTGAG 1 cut(s) 947
BsaAI YACGTR 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 55, 419, 918
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 231
Bse1I ACTGG 2 cut(s) 266, 743
Bse3DI GCAATG 2 cut(s) 471, 833
BseBI CCWGG 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 55, 419, 918
BseGI GGATG 2 cut(s) 349, 400
BseLI CCNNNNNNNGG 2 cut(s) 50, 231
BseMI GCAATG 2 cut(s) 471, 833
BseMII CTCAG 4 cut(s) 258, 368, 631, 813
BseNI ACTGG 2 cut(s) 266, 743
BseXI GCAGC 5 cut(s) 34, 343, 388, 448, 888
BseYI CCCAGC 2 cut(s) 133, 1044
BshFI GGCC 3 cut(s) 54, 60, 741
BsiHKAI GWGCWC 1 cut(s) 606
BslFI GGGAC 1 cut(s) 1041
BslI CCNNNNNNNGG 2 cut(s) 50, 231
BsmAI GTCTC 2 cut(s) 590, 626
BsmFI GGGAC 1 cut(s) 1041
BsnI GGCC 3 cut(s) 54, 60, 741
Bsp1286I GDGCHC 2 cut(s) 606, 1051
Bsp1407I TGTACA 1 cut(s) 811
Bsp143I GATC 2 cut(s) 546, 697
BspACI CCGC 1 cut(s) 284
BspANI GGCC 3 cut(s) 54, 60, 741
BspCNI CTCAG 4 cut(s) 259, 367, 630, 812
BspHI TCATGA 1 cut(s) 606
BspLI GGNNCC 1 cut(s) 1050
BsrDI GCAATG 2 cut(s) 471, 833
BsrGI TGTACA 1 cut(s) 811
BsrI ACTGG 2 cut(s) 266, 743
BssECI CCNNGG 3 cut(s) 55, 419, 918
BssMI GATC 2 cut(s) 546, 697
BssT1I CCWWGG 3 cut(s) 55, 419, 918
Bst2UI CCWGG 1 cut(s) 441
Bst4CI ACNGT 2 cut(s) 887, 899
Bst6I CTCTTC 2 cut(s) 155, 978
BstAUI TGTACA 1 cut(s) 811
BstBAI YACGTR 1 cut(s) 104
BstC8I GCNNGC 2 cut(s) 370, 824
BstDEI CTNAG 5 cut(s) 267, 354, 617, 799, 907
BstF5I GGATG 2 cut(s) 349, 400
BstKTI GATC 2 cut(s) 549, 700
BstMAI GTCTC 2 cut(s) 590, 626
BstMBI GATC 2 cut(s) 546, 697
BstMWI GCNNNNNNNGC 1 cut(s) 876
BstNI CCWGG 1 cut(s) 441
BstNSI RCATGY 1 cut(s) 1076
BstSCI CCNGG 1 cut(s) 439
BstSFI CTRYAG 1 cut(s) 703
BstV1I GCAGC 5 cut(s) 34, 343, 388, 448, 888
BsuRI GGCC 3 cut(s) 54, 60, 741
BtsCI GGATG 2 cut(s) 349, 400
BtsIMutI CAGTG 2 cut(s) 362, 898
Cac8I GCNNGC 2 cut(s) 370, 824
CaiI CAGNNNCTG 1 cut(s) 897
CciI TCATGA 1 cut(s) 606
Cfr13I GGNCC 3 cut(s) 52, 437, 740
CseI GACGC 1 cut(s) 484
CsiI ACCWGGT 1 cut(s) 439
Csp6I GTAC 2 cut(s) 481, 812
CviAII CATG 6 cut(s) 493, 542, 607, 729, 815, 1073
CviQI GTAC 2 cut(s) 481, 812
DdeI CTNAG 5 cut(s) 267, 354, 617, 799, 907
DpnI GATC 2 cut(s) 548, 699
DpnII GATC 2 cut(s) 546, 697
DraIII CACNNNGTG 1 cut(s) 107
Eam1104I CTCTTC 2 cut(s) 155, 978
EarI CTCTTC 2 cut(s) 155, 978
Ecl136II GAGCTC 1 cut(s) 604
Eco130I CCWWGG 3 cut(s) 55, 419, 918
Eco24I GRGCYC 2 cut(s) 606, 1051
Eco47I GGWCC 1 cut(s) 437
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 2 cut(s) 261, 1017
Eco72I CACGTG 1 cut(s) 104
EcoICRI GAGCTC 1 cut(s) 604
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 439
EcoT14I CCWWGG 3 cut(s) 55, 419, 918
EcoT38I GRGCYC 2 cut(s) 606, 1051
ErhI CCWWGG 3 cut(s) 55, 419, 918
FaeI CATG 6 cut(s) 496, 545, 610, 732, 818, 1076
FaqI GGGAC 1 cut(s) 1041
FatI CATG 6 cut(s) 492, 541, 606, 728, 814, 1072
Fnu4HI GCNGC 5 cut(s) 23, 332, 402, 462, 877
FokI GGATG 2 cut(s) 336, 407
FriOI GRGCYC 2 cut(s) 606, 1051
Fsp4HI GCNGC 5 cut(s) 23, 332, 402, 462, 877
FspBI CTAG 1 cut(s) 783
GluI GCNGC 5 cut(s) 23, 332, 402, 462, 877
GsaI CCCAGC 2 cut(s) 137, 1048
HaeIII GGCC 3 cut(s) 54, 60, 741
HgaI GACGC 1 cut(s) 484
Hin1II CATG 6 cut(s) 496, 545, 610, 732, 818, 1076
HinfI GANTC 4 cut(s) 415, 509, 515, 1063
HphI GGTGA 4 cut(s) 119, 145, 565, 605
Hpy188I TCNGA 3 cut(s) 508, 514, 620
Hpy188III TCNNGA 3 cut(s) 607, 926, 961
HpyAV CCTTC 9 cut(s) 50, 236, 490, 582, 783, 788, 958, 992, 1017
HpyCH4III ACNGT 2 cut(s) 887, 899
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 8 cut(s) 143, 368, 404, 464, 503, 756, 826, 1076
HpyF10VI GCNNNNNNNGC 1 cut(s) 876
HpyF3I CTNAG 5 cut(s) 267, 354, 617, 799, 907
HpySE526I ACGT 1 cut(s) 103
Hsp92II CATG 6 cut(s) 496, 545, 610, 732, 818, 1076
Kzo9I GATC 2 cut(s) 546, 697
LmnI GCTCC 2 cut(s) 645, 1054
Lsp1109I GCAGC 5 cut(s) 34, 343, 388, 448, 888
LweI GCATC 1 cut(s) 512
MabI ACCWGGT 1 cut(s) 439
MaeI CTAG 1 cut(s) 783
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 3 cut(s) 472, 553, 893
MalI GATC 2 cut(s) 548, 699
MboI GATC 2 cut(s) 546, 697
MboII GAAGA 7 cut(s) 28, 142, 194, 515, 518, 995, 1058
MhlI GDGCHC 2 cut(s) 606, 1051
MluCI AATT 4 cut(s) 212, 835, 912, 944
MnlI CCTC 7 cut(s) 83, 363, 498, 714, 922, 1012, 1034
MroXI GAANNNNTTC 2 cut(s) 201, 519
MseI TTAA 2 cut(s) 582, 663
MspR9I CCNGG 1 cut(s) 441
MvaI CCWGG 1 cut(s) 441
MwoI GCNNNNNNNGC 1 cut(s) 876
NdeII GATC 2 cut(s) 546, 697
NlaIII CATG 6 cut(s) 496, 545, 610, 732, 818, 1076
NlaIV GGNNCC 1 cut(s) 1050
NmuCI GTSAC 3 cut(s) 472, 553, 893
NspI RCATGY 1 cut(s) 1076
PagI TCATGA 1 cut(s) 606
PdmI GAANNNNTTC 2 cut(s) 201, 519
PfeI GAWTC 4 cut(s) 415, 509, 515, 1063
PkrI GCNGC 5 cut(s) 24, 333, 403, 463, 878
PmaCI CACGTG 1 cut(s) 104
PmlI CACGTG 1 cut(s) 104
Ppu21I YACGTR 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 437
PshBI ATTAAT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 1037
Psp124BI GAGCTC 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 439
PspCI CACGTG 1 cut(s) 104
PspFI CCCAGC 2 cut(s) 133, 1044
PspGI CCWGG 1 cut(s) 439
PspN4I GGNNCC 1 cut(s) 1050
PspPI GGNCC 3 cut(s) 52, 437, 740
PspPPI RGGWCCY 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 897
RsaI GTAC 2 cut(s) 482, 813
RsaNI GTAC 2 cut(s) 481, 812
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 582, 663
SatI GCNGC 5 cut(s) 23, 332, 402, 462, 877
Sau3AI GATC 2 cut(s) 546, 697
Sau96I GGNCC 3 cut(s) 52, 437, 740
ScrFI CCNGG 1 cut(s) 441
SduI GDGCHC 2 cut(s) 606, 1051
SexAI ACCWGGT 1 cut(s) 439
SfaNI GCATC 1 cut(s) 512
SfcI CTRYAG 1 cut(s) 703
SinI GGWCC 1 cut(s) 437
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 4 cut(s) 212, 835, 912, 944
SsiI CCGC 1 cut(s) 284
SspMI CTAG 1 cut(s) 783
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 439
StyI CCWWGG 3 cut(s) 55, 419, 918
TaaI ACNGT 2 cut(s) 887, 899
TaiI ACGT 1 cut(s) 106
TaqI TCGA 1 cut(s) 195
TasI AATT 4 cut(s) 212, 835, 912, 944
TatI WGTACW 1 cut(s) 811
TfiI GAWTC 4 cut(s) 415, 509, 515, 1063
Tru1I TTAA 2 cut(s) 582, 663
Tru9I TTAA 2 cut(s) 582, 663
TscAI CASTG 2 cut(s) 362, 898
TseFI GTSAC 3 cut(s) 472, 553, 893
TseI GCWGC 5 cut(s) 22, 331, 401, 461, 876
Tsp45I GTSAC 3 cut(s) 472, 553, 893
TspDTI ATGAA 6 cut(s) 371, 509, 623, 690, 738, 937
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 2 cut(s) 362, 898
VpaK11BI GGWCC 1 cut(s) 437
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 1 cut(s) 212
XceI RCATGY 1 cut(s) 1076
XmnI GAANNNNTTC 2 cut(s) 201, 519
XspI CTAG 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.