Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Reverse (-)

26193618 .. 26195726

Gene Structure 2109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATGATGGGTTTTGCTGTATCGGATGAATTGTTGGGTACTGTTGCTCCGATTGTGGTGTACTGGTTGTATTCTGGGATTTATGTAGCGCTCTCCTCTTTAGAGAGTTATAGATTGCATTCAAAGGTTGAAGAAGAAGAGAAGAATCTTGTATCGAAATCTTCTGTTGTGAAAGGTGTTCTTGTTCAACAGGTTGTTCAAGCTGTTGTCGCTATCCTTTTGTTCACGGTGACGGGAAGTGATGCCGAAGCAGACAAAGCGCAACAGTTTTCCTTCTTGGTCCTAGCAAGACAGTTTGTGACTGCCATGATAGTCCTCGACACATGGCAATACTTCATGCATCGATATATGCATCAGAACAAGTTCTTATACAAACATATCCACTCTCAACACCACCGTCTTATCGTCCCTTATGCATATGGAGCTTTATACAACCATCCAGTGGAAGGTCTTCTCTTGGATACAATTGGAGGCGCCTTATCTTTCCTAGTCTCTGGTATGTCTCCAAGAACTTCCATCTTCTTCTTCTCTTTCGCCACGATCAAAACCGTGGACGACCATTGCGGTCTCTGGCTACCTGGAAACTTATTCCATATGGTCTTCAAGAACAACTCGGCTTACCACGATATCCATCATCAGCTCTATGGAACCAAATACAATTTCTCTCAGCCTTTCTTTGTCATGTGGGATCGGATTCTTGGAACTTACATGCCTTACTCGCTTGAGAAAAGAGAAGATGGAGGATTCGAAGCTCGCCCGACTAAAGAATTCAAAGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0030148 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042284 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0046520 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

260

Amino Acids

29.82

Weight (kDa)

6.49

Isoelectric Point (pI)

34.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	99 - 235	2.9e-25	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	1 cut(s)	442
AciI	CCGC	1 cut(s)	564
AclWI	GGATC	1 cut(s)	696
AcsI	RAATTY	1 cut(s)	767
AcyI	GRCGYC	1 cut(s)	474
AfaI	GTAC	2 cut(s)	40, 62
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	442, 446
AgsI	TTSAA	6 cut(s)	123, 131, 188, 200, 604, 772
AjnI	CCWGG	1 cut(s)	577
AjuI	GAANNNNNNNTTGG	2 cut(s)	644, 676
AluBI	AGCT	4 cut(s)	203, 425, 640, 752
AluI	AGCT	4 cut(s)	203, 425, 640, 752
Alw26I	GTCTC	3 cut(s)	496, 507, 572
AlwI	GGATC	1 cut(s)	696
Aor51HI	AGCGCT	1 cut(s)	90
ApoI	RAATTY	1 cut(s)	767
Asp700I	GAANNNNTTC	2 cut(s)	362, 450
AspLEI	GCGC	3 cut(s)	91, 262, 476
AspS9I	GGNCC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	241
AsuII	TTCGAA	1 cut(s)	747
AvaII	GGWCC	1 cut(s)	280
BanI	GGYRCC	1 cut(s)	473
BbsI	GAAGAC	2 cut(s)	443, 592
BccI	CCATC	4 cut(s)	444, 524, 639, 731
BciT130I	CCWGG	1 cut(s)	579
BciVI	GTATCC	1 cut(s)	454
BcoDI	GTCTC	3 cut(s)	496, 507, 572
BfaI	CTAG	2 cut(s)	284, 488
BfoI	RGCGCY	2 cut(s)	92, 477
BfuI	GTATCC	1 cut(s)	454
Bme1390I	CCNGG	1 cut(s)	579
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	475, 649
BmrFI	CCNGG	1 cut(s)	579
BmsI	GCATC	3 cut(s)	232, 349, 361
BpiI	GAAGAC	2 cut(s)	443, 592
Bpu14I	TTCGAA	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	743
Bsa29I	ATCGAT	1 cut(s)	343
BsaBI	GATNNNNATC	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	474
BsaI	GGTCTC	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 446
Bse1I	ACTGG	2 cut(s)	68, 440
Bse3DI	GCAATG	1 cut(s)	559
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	1 cut(s)	579
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	2 cut(s)	31, 436
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	2 cut(s)	442, 446
BseMI	GCAATG	1 cut(s)	559
BseMII	CTCAG	1 cut(s)	680
BseNI	ACTGG	2 cut(s)	68, 440
BseRI	GAGGAG	1 cut(s)	85
BshNI	GGYRCC	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	442, 446
BsmAI	GTCTC	3 cut(s)	496, 507, 572
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	118
Bso31I	GGTCTC	1 cut(s)	572
Bsp119I	TTCGAA	1 cut(s)	747
Bsp143I	GATC	2 cut(s)	540, 688
BspACI	CCGC	1 cut(s)	564
BspCNI	CTCAG	1 cut(s)	679
BspDI	ATCGAT	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	475, 649
BspPI	GGATC	1 cut(s)	696
BspT104I	TTCGAA	1 cut(s)	747
BspT107I	GGYRCC	1 cut(s)	473
BspTNI	GGTCTC	1 cut(s)	572
BsrDI	GCAATG	1 cut(s)	559
BsrI	ACTGG	2 cut(s)	68, 440
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	2 cut(s)	540, 688
BssNI	GRCGYC	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	6 cut(s)	43, 229, 267, 294, 398, 550
Bst6I	CTCTTC	1 cut(s)	132
BstACI	GRCGYC	1 cut(s)	474
BstBI	TTCGAA	1 cut(s)	747
BstC8I	GCNNGC	1 cut(s)	754
BstDEI	CTNAG	1 cut(s)	666
BstDSI	CCRYGG	1 cut(s)	549
BstF5I	GGATG	2 cut(s)	31, 436
BstH2I	RGCGCY	2 cut(s)	92, 477
BstHHI	GCGC	3 cut(s)	91, 262, 476
BstKTI	GATC	2 cut(s)	543, 691
BstMAI	GTCTC	3 cut(s)	496, 507, 572
BstMBI	GATC	2 cut(s)	540, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 257, 422, 718
BstNI	CCWGG	1 cut(s)	579
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	1 cut(s)	577
BstV2I	GAAGAC	2 cut(s)	443, 592
Bsu15I	ATCGAT	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	454
BsuTUI	ATCGAT	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	31, 436
BtsIMutI	CAGTG	1 cut(s)	447
Cac8I	GCNNGC	1 cut(s)	754
CfoI	GCGC	3 cut(s)	91, 262, 476
Cfr13I	GGNCC	1 cut(s)	280
ClaI	ATCGAT	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	39, 61
CviAII	CATG	5 cut(s)	307, 324, 337, 682, 709
CviJI	RGCY	7 cut(s)	203, 425, 574, 617, 640, 670, 752
CviKI_1	RGCY	7 cut(s)	203, 425, 574, 617, 640, 670, 752
CviQI	GTAC	2 cut(s)	39, 61
DdeI	CTNAG	1 cut(s)	666
DinI	GGCGCC	1 cut(s)	475
DpnI	GATC	2 cut(s)	542, 690
DpnII	GATC	2 cut(s)	540, 688
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco31I	GGTCTC	1 cut(s)	572
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	280
Eco47III	AGCGCT	1 cut(s)	90
EcoRI	GAATTC	1 cut(s)	767
EcoRII	CCWGG	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	628
EcoT22I	ATGCAT	3 cut(s)	342, 354, 418
EgeI	GGCGCC	1 cut(s)	475
EheI	GGCGCC	1 cut(s)	475
FaeI	CATG	5 cut(s)	310, 327, 340, 685, 712
FalI	AAGNNNNNCTT	2 cut(s)	165, 197
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	5 cut(s)	306, 323, 336, 681, 708
FauNDI	CATATG	2 cut(s)	418, 594
FokI	GGATG	2 cut(s)	38, 423
FspBI	CTAG	2 cut(s)	284, 488
GlaI	GCGC	3 cut(s)	90, 261, 475
HaeII	RGCGCY	2 cut(s)	92, 477
HhaI	GCGC	3 cut(s)	91, 262, 476
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	5 cut(s)	310, 327, 340, 685, 712
Hin6I	GCGC	3 cut(s)	89, 260, 474
HinP1I	GCGC	3 cut(s)	89, 260, 474
HinfI	GANTC	3 cut(s)	145, 694, 744
HphI	GGTGA	1 cut(s)	241
Hpy166II	GTNNAC	3 cut(s)	61, 225, 553
Hpy188I	TCNGA	4 cut(s)	25, 51, 357, 693
Hpy188III	TCNNGA	1 cut(s)	604
Hpy8I	GTNNAC	3 cut(s)	61, 225, 553
HpyAV	CCTTC	2 cut(s)	283, 440
HpyCH4III	ACNGT	6 cut(s)	43, 229, 267, 294, 398, 550
HpyCH4V	TGCA	4 cut(s)	118, 340, 352, 416
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 257, 422, 718
HpyF3I	CTNAG	1 cut(s)	666
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	5 cut(s)	310, 327, 340, 685, 712
HspAI	GCGC	3 cut(s)	89, 260, 474
KasI	GGCGCC	1 cut(s)	473
Kzo9I	GATC	2 cut(s)	540, 688
LmnI	GCTCC	2 cut(s)	52, 422
LpnPI	CCDG	8 cut(s)	49, 60, 176, 453, 480, 556, 564, 591
LweI	GCATC	3 cut(s)	232, 349, 361
MaeI	CTAG	2 cut(s)	284, 488
MaeIII	GTNAC	2 cut(s)	229, 298
MalI	GATC	2 cut(s)	542, 690
MboI	GATC	2 cut(s)	540, 688
MfeI	CAATTG	1 cut(s)	465
MluCI	AATT	4 cut(s)	29, 465, 658, 767
Mly113I	GGCGCC	1 cut(s)	474
MnlI	CCTC	4 cut(s)	106, 326, 464, 734
Mph1103I	ATGCAT	3 cut(s)	342, 354, 418
MroXI	GAANNNNTTC	2 cut(s)	362, 450
MseI	TTAA	1 cut(s)	781
MspR9I	CCNGG	1 cut(s)	579
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	4 cut(s)	209, 257, 422, 718
NarI	GGCGCC	1 cut(s)	474
NdeI	CATATG	2 cut(s)	418, 594
NdeII	GATC	2 cut(s)	540, 688
NlaIII	CATG	5 cut(s)	310, 327, 340, 685, 712
NlaIV	GGNNCC	2 cut(s)	475, 649
NmeAIII	GCCGAG	1 cut(s)	593
NmuCI	GTSAC	2 cut(s)	229, 298
NsiI	ATGCAT	3 cut(s)	342, 354, 418
NspI	RCATGY	1 cut(s)	712
NspV	TTCGAA	1 cut(s)	747
PctI	GAATGC	1 cut(s)	118
PdmI	GAANNNNTTC	2 cut(s)	362, 450
PfeI	GAWTC	3 cut(s)	145, 694, 744
PflMI	CCANNNNNTGG	1 cut(s)	442
PluTI	GGCGCC	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	475, 649
PspPI	GGNCC	1 cut(s)	280
RsaI	GTAC	2 cut(s)	40, 62
RsaNI	GTAC	2 cut(s)	39, 61
SaqAI	TTAA	1 cut(s)	781
Sau3AI	GATC	2 cut(s)	540, 688
Sau96I	GGNCC	1 cut(s)	280
ScrFI	CCNGG	1 cut(s)	579
SetI	ASST	9 cut(s)	129, 178, 195, 205, 427, 451, 580, 642, 754
SfaNI	GCATC	3 cut(s)	232, 349, 361
SfoI	GGCGCC	1 cut(s)	475
SfuI	TTCGAA	1 cut(s)	747
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
Sse9I	AATT	4 cut(s)	29, 465, 658, 767
SsiI	CCGC	1 cut(s)	564
SspDI	GGCGCC	1 cut(s)	473
SspMI	CTAG	2 cut(s)	284, 488
StyD4I	CCNGG	1 cut(s)	577
TaaI	ACNGT	6 cut(s)	43, 229, 267, 294, 398, 550
TaqI	TCGA	4 cut(s)	155, 318, 343, 747
TasI	AATT	4 cut(s)	29, 465, 658, 767
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	3 cut(s)	145, 694, 744
Tru1I	TTAA	1 cut(s)	781
Tru9I	TTAA	1 cut(s)	781
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	229, 298
Tsp45I	GTSAC	2 cut(s)	229, 298
TspDTI	ATGAA	2 cut(s)	42, 325
TspRI	CASTG	1 cut(s)	447
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	767
XceI	RCATGY	1 cut(s)	712
XmnI	GAANNNNTTC	2 cut(s)	362, 450
XspI	CTAG	2 cut(s)	284, 488
Zsp2I	ATGCAT	3 cut(s)	342, 354, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.