Rh7CG205000

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0001109
Physical Location & Seq
Forward (+)
18243611 .. 18264435
20825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG205000.1

Sequence Viewer

Length: 636 bp
ATGCATAGGTATATGCATGAGAACAAGTTCCTCTACAAGCACATCCACTCCCAGCATCACAGGCTTGTAGCTCCGTATACATATGCAACATTGTACAACCACCTGTTGGAGGGTCTTCTCGTGGACACTATGGACGGAGCTGTCAGCTTCTTGCTGTTAGGCATATCTCCGCAAACTTCGATTTTCTTCTTCTCATTTGCAACCAGCAAGGCAGTGGACGACCACCCCAGTGTATACAACTTTCCATGGCACCCGTTTCATGTTCTATTTAGAAACAACAGCTCGTATCATGATGTGCACCACCAGCTTTCCGGGACCAAGTACAACTTCTCTCAGCCCTTCTTTGTGTTTTGGGATAGGATACTCGGTACCTACCACATGCCATCATCTGCTGAAGATGAGCTCAACAAGGAGGCCAAGAGGATGGTGGATGTGGCTGCTGCTGGAAAGGTAGGTGGGGAACTAAATTTGATCCCACCACCTCCTCTAACCATTCCACCCAATGCGAAGCTAGAACTTGTAGATTTTGGGGCTCAACAAACAGAGCTGCAGAAGAAACAAGGAAAGAAGAACAGAGAAAATGGCAGTGAAAACAAGATAACCACAACGAACAGAGCAAAACGAGAGAAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 map00600 map01100
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

211

Amino Acids

24.24

Weight (kDa)

8.66

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 1 - 124 2e-19 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
Acc65I GGTACC 1 cut(s) 368
AccB1I GGYRCC 2 cut(s) 249, 368
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 2 cut(s) 77, 234
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 466
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 1 cut(s) 414
AfaI GTAC 3 cut(s) 95, 323, 370
AfiI CCNNNNNNNGG 2 cut(s) 106, 109
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 8 cut(s) 71, 140, 147, 282, 307, 403, 511, 547
AluI AGCT 8 cut(s) 71, 140, 147, 282, 307, 403, 511, 547
Alw21I GWGCWC 2 cut(s) 300, 405
Alw44I GTGCAC 1 cut(s) 296
AlwI GGATC 1 cut(s) 466
AoxI GGCC 1 cut(s) 414
ApaLI GTGCAC 1 cut(s) 296
ApeKI GCWGC 3 cut(s) 437, 440, 547
ApoI RAATTY 1 cut(s) 466
Asp700I GAANNNNTTC 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 315
AsuC2I CCSGG 1 cut(s) 313
AvaII GGWCC 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 300
BanI GGYRCC 2 cut(s) 249, 368
BanII GRGCYC 2 cut(s) 405, 535
BauI CACGAG 1 cut(s) 119
BbsI GAAGAC 1 cut(s) 107
Bbv12I GWGCWC 2 cut(s) 300, 405
BbvI GCAGC 3 cut(s) 424, 427, 534
BccI CCATC 2 cut(s) 391, 418
BciVI GTATCC 1 cut(s) 354
BcnI CCSGG 1 cut(s) 313
BfaI CTAG 1 cut(s) 512
BfmI CTRYAG 1 cut(s) 548
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 3 cut(s) 438, 441, 548
BlsI GCNGC 3 cut(s) 439, 442, 549
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 3 cut(s) 251, 316, 370
BmrFI CCNGG 1 cut(s) 313
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 64
BmuI ACTGGG 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 109
Bse1I ACTGG 1 cut(s) 228
BseDI CCNNGG 1 cut(s) 245
BseGI GGATG 3 cut(s) 42, 429, 436
BseLI CCNNNNNNNGG 2 cut(s) 106, 109
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 474
BseSI GKGCMC 1 cut(s) 300
BseXI GCAGC 3 cut(s) 424, 427, 534
BseYI CCCAGC 1 cut(s) 51
BshFI GGCC 1 cut(s) 416
BshNI GGYRCC 2 cut(s) 249, 368
BsiHKAI GWGCWC 2 cut(s) 300, 405
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 2 cut(s) 106, 109
BsmFI GGGAC 1 cut(s) 328
BsnI GGCC 1 cut(s) 416
Bsp1286I GDGCHC 3 cut(s) 300, 405, 535
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 471
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 1 cut(s) 170
BspANI GGCC 1 cut(s) 416
BspCNI CTCAG 1 cut(s) 346
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 251, 316, 370
BspMAI CTGCAG 1 cut(s) 552
BspPI GGATC 1 cut(s) 466
BspT107I GGYRCC 2 cut(s) 249, 368
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 471
BssNAI GTATAC 2 cut(s) 78, 235
BssSI CACGAG 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 245
Bst1107I GTATAC 2 cut(s) 78, 235
Bst2BI CACGAG 1 cut(s) 119
BstAUI TGTACA 1 cut(s) 93
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 245
BstENI CCTNNNNNAGG 1 cut(s) 107
BstF5I GGATG 3 cut(s) 42, 429, 436
BstKTI GATC 1 cut(s) 474
BstMBI GATC 1 cut(s) 471
BstMWI GCNNNNNNNGC 2 cut(s) 61, 304
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 548
BstSLI GKGCMC 1 cut(s) 300
BstV1I GCAGC 3 cut(s) 424, 427, 534
BstV2I GAAGAC 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 424
BstZ17I GTATAC 2 cut(s) 78, 235
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 416
BtgI CCRYGG 1 cut(s) 245
BtsCI GGATG 3 cut(s) 42, 429, 436
BtsI GCAGTG 2 cut(s) 219, 592
BtsIMutI CAGTG 3 cut(s) 219, 235, 592
CciI TCATGA 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 315
Csp6I GTAC 3 cut(s) 94, 322, 369
CviAII CATG 5 cut(s) 17, 246, 260, 290, 379
CviQI GTAC 3 cut(s) 94, 322, 369
DdeI CTNAG 1 cut(s) 333
DpnI GATC 1 cut(s) 473
DpnII GATC 1 cut(s) 471
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
Ecl136II GAGCTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 2 cut(s) 405, 535
Eco47I GGWCC 1 cut(s) 315
Eco53kI GAGCTC 1 cut(s) 403
Eco57I CTGAAG 1 cut(s) 414
EcoICRI GAGCTC 1 cut(s) 403
EcoNI CCTNNNNNAGG 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 245
EcoT22I ATGCAT 2 cut(s) 6, 18
EcoT38I GRGCYC 2 cut(s) 405, 535
ErhI CCWWGG 1 cut(s) 245
FaeI CATG 5 cut(s) 20, 249, 263, 293, 382
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 328
FatI CATG 5 cut(s) 16, 245, 259, 289, 378
FauNDI CATATG 1 cut(s) 82
FblI GTMKAC 2 cut(s) 77, 234
Fnu4HI GCNGC 3 cut(s) 438, 441, 548
FokI GGATG 3 cut(s) 29, 436, 443
FriOI GRGCYC 2 cut(s) 405, 535
Fsp4HI GCNGC 3 cut(s) 438, 441, 548
FspBI CTAG 1 cut(s) 512
GluI GCNGC 3 cut(s) 438, 441, 548
GsaI CCCAGC 1 cut(s) 55
HaeIII GGCC 1 cut(s) 416
HapII CCGG 1 cut(s) 312
Hin1II CATG 5 cut(s) 20, 249, 263, 293, 382
HpaII CCGG 1 cut(s) 312
Hpy166II GTNNAC 5 cut(s) 78, 124, 217, 235, 298
Hpy188III TCNNGA 1 cut(s) 290
Hpy8I GTNNAC 5 cut(s) 78, 124, 217, 235, 298
HpyAV CCTTC 1 cut(s) 349
HpyCH4V TGCA 6 cut(s) 4, 16, 86, 200, 298, 550
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 304
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 5 cut(s) 20, 249, 263, 293, 382
KpnI GGTACC 1 cut(s) 372
Kzo9I GATC 1 cut(s) 471
LmnI GCTCC 2 cut(s) 76, 137
LpnPI CCDG 8 cut(s) 46, 65, 116, 217, 241, 317, 325, 429
Lsp1109I GCAGC 3 cut(s) 424, 427, 534
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 512
MalI GATC 1 cut(s) 473
MboI GATC 1 cut(s) 471
MboII GAAGA 6 cut(s) 107, 178, 181, 407, 565, 580
MhlI GDGCHC 3 cut(s) 300, 405, 535
MluCI AATT 1 cut(s) 466
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 6 cut(s) 41, 103, 406, 414, 492, 495
Mph1103I ATGCAT 2 cut(s) 6, 18
MroXI GAANNNNTTC 1 cut(s) 26
MseI TTAA 1 cut(s) 634
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 313
MwoI GCNNNNNNNGC 2 cut(s) 61, 304
NciI CCSGG 1 cut(s) 313
NcoI CCATGG 1 cut(s) 245
NdeI CATATG 1 cut(s) 82
NdeII GATC 1 cut(s) 471
NlaIII CATG 5 cut(s) 20, 249, 263, 293, 382
NlaIV GGNNCC 3 cut(s) 251, 316, 370
NsiI ATGCAT 2 cut(s) 6, 18
NspI RCATGY 1 cut(s) 382
OliI CACNNNNGTG 1 cut(s) 228
PagI TCATGA 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 311
PkrI GCNGC 3 cut(s) 439, 442, 549
Psp124BI GAGCTC 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 51
PspN4I GGNNCC 3 cut(s) 251, 316, 370
PspPI GGNCC 1 cut(s) 315
PstI CTGCAG 1 cut(s) 552
RsaI GTAC 3 cut(s) 95, 323, 370
RsaNI GTAC 3 cut(s) 94, 322, 369
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 634
SatI GCNGC 3 cut(s) 438, 441, 548
Sau3AI GATC 1 cut(s) 471
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 3 cut(s) 300, 405, 535
SfaNI GCATC 1 cut(s) 64
SfcI CTRYAG 1 cut(s) 548
SinI GGWCC 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 1 cut(s) 466
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 512
SstI GAGCTC 1 cut(s) 405
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 245
TaqI TCGA 1 cut(s) 179
TasI AATT 1 cut(s) 466
TatI WGTACW 2 cut(s) 93, 321
Tru1I TTAA 1 cut(s) 634
Tru9I TTAA 1 cut(s) 634
TscAI CASTG 3 cut(s) 219, 235, 592
TseI GCWGC 3 cut(s) 437, 440, 547
TspDTI ATGAA 1 cut(s) 248
TspGWI ACGGA 2 cut(s) 63, 150
TspRI CASTG 3 cut(s) 219, 235, 592
Van91I CCANNNNNTGG 1 cut(s) 106
VneI GTGCAC 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 107
XapI RAATTY 1 cut(s) 466
XceI RCATGY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 2 cut(s) 211, 424
XmiI GTMKAC 2 cut(s) 77, 234
XmnI GAANNNNTTC 1 cut(s) 26
XspI CTAG 1 cut(s) 512
Zsp2I ATGCAT 2 cut(s) 6, 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.