Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Reverse (-)

4246654 .. 4248804

Gene Structure 2151 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGAATCGAGGTTTCCGATGAGCTGTTGGGAACTTTCGTCCCGGTTTTGATATATTGGGCGTATTCGGGGATTTACGTGCTGCTGGATTCGTTCGAGGAGTACCGATTGCACACCAGGAAGGACGAGGACGAGAAGAATTTGGTCTCCAAGAGAACTGTCGTCAAAGGGGTTCTTCTCCAGCAGACGATTCAGGCTATTGTCGCTATTATCCTGTTCACGGTGACAGGAAATGATGGCGGGGATGCAGGTACAAAGCCTTCTTTCATTGATCTAGGAAGACAATTTGTTATTGCAATGGTGGTTTTGGATACCTGGCAATACTTTATGCACAGATACATGCACCACAACAAGTTCTTATACAAACATATCCATTCCCAACATCACCGACTTGTTGTGCCCTATGCATTTGGAGCTCTGTACAATCACCCTGTGGAGGGACTTCTCCTTGATACAATTGGCGGGGCTTTATCTTTTCTCTTCTCTGGTATGTCTCCTCGGGCCTCCATATTCTTCTTCTCCTTTGCGACCATCAAAACGGTGGACGATCATTGTGGATTATGGCTTCCTGGGAACCTCTTCCATGCATTGTTCAGAAATAATACTGCTTACCACGATGTCCATCACCAGCTCTATGGAAACAAGTATAACTTCTCCCAGCCTTTCTTTGTTGTGTGGGATAGAATACTTGGTACGTACATGCCTTACTCATTAGAGAAGAGAGCAGGTGGGGGCTTTGAAGTGCGGCCTAAGAAAGTGGAGAAGGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0030148 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042284 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0046520 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

258

Amino Acids

29.53

Weight (kDa)

7.26

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	96 - 232	4.6e-26	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	716
Acc36I	ACCTGC	2 cut(s)	239, 716
AciI	CCGC	3 cut(s)	240, 462, 745
AcsI	RAATTY	1 cut(s)	139
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	5 cut(s)	104, 253, 422, 694, 698
AfiI	CCNNNNNNNGG	3 cut(s)	220, 436, 437
AgsI	TTSAA	1 cut(s)	740
AjnI	CCWGG	3 cut(s)	116, 314, 568
AluBI	AGCT	3 cut(s)	25, 416, 631
AluI	AGCT	3 cut(s)	25, 416, 631
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	2 cut(s)	151, 498
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	2 cut(s)	501, 746
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	578
AspS9I	GGNCC	1 cut(s)	501
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	4 cut(s)	235, 377, 419, 617
AvaI	CYCGRG	1 cut(s)	498
BaeGI	GKGCMC	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	418
BarI	GAAGNNNNNNTAC	2 cut(s)	244, 276
BbsI	GAAGAC	1 cut(s)	286
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	3 cut(s)	230, 539, 630
BciT130I	CCWGG	3 cut(s)	118, 316, 570
BciVI	GTATCC	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	151, 498
BfaI	CTAG	1 cut(s)	275
BfuAI	ACCTGC	2 cut(s)	239, 716
BfuI	GTATCC	1 cut(s)	304
BisI	GCNGC	2 cut(s)	83, 746
BlsI	GCNGC	2 cut(s)	84, 747
Bme1390I	CCNGG	4 cut(s)	44, 118, 316, 570
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	575
BmrFI	CCNGG	4 cut(s)	44, 118, 316, 570
BmsI	GCATC	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	286
BpmI	CTGGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	44
BsaAI	YACGTR	2 cut(s)	79, 696
BsaBI	GATNNNNATC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	497, 569
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 436, 437
Bse3DI	GCAATG	1 cut(s)	303
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	3 cut(s)	118, 316, 570
BseDI	CCNNGG	2 cut(s)	497, 569
BseGI	GGATG	1 cut(s)	250
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	3 cut(s)	220, 436, 437
BseMI	GCAATG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	113, 486
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	657
BshFI	GGCC	2 cut(s)	503, 748
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	26, 453
BslI	CCNNNNNNNGG	3 cut(s)	220, 436, 437
BsmAI	GTCTC	2 cut(s)	151, 498
BsmFI	GGGAC	2 cut(s)	26, 453
BsnI	GGCC	2 cut(s)	503, 748
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	402, 418
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	2 cut(s)	271, 547
BspACI	CCGC	3 cut(s)	240, 462, 745
BspANI	GGCC	2 cut(s)	503, 748
BspLI	GGNNCC	1 cut(s)	575
BspMI	ACCTGC	2 cut(s)	239, 716
BspTNI	GGTCTC	1 cut(s)	151
BsrDI	GCAATG	1 cut(s)	303
BsrGI	TGTACA	1 cut(s)	420
BssECI	CCNNGG	2 cut(s)	497, 569
BssMI	GATC	2 cut(s)	271, 547
Bst2UI	CCWGG	3 cut(s)	118, 316, 570
Bst4CI	ACNGT	3 cut(s)	160, 223, 541
Bst6I	CTCTTC	3 cut(s)	485, 584, 713
BstAUI	TGTACA	1 cut(s)	420
BstBAI	YACGTR	2 cut(s)	79, 696
BstDEI	CTNAG	1 cut(s)	750
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	2 cut(s)	274, 550
BstMAI	GTCTC	2 cut(s)	151, 498
BstMBI	GATC	2 cut(s)	271, 547
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 413
BstNI	CCWGG	3 cut(s)	118, 316, 570
BstNSI	RCATGY	2 cut(s)	343, 703
BstSCI	CCNGG	4 cut(s)	42, 116, 314, 568
BstSLI	GKGCMC	1 cut(s)	402
BstSNI	TACGTA	1 cut(s)	696
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	286
BstXI	CCANNNNNNTGG	1 cut(s)	635
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	503, 748
BtsCI	GGATG	1 cut(s)	250
BveI	ACCTGC	2 cut(s)	239, 716
Cfr13I	GGNCC	1 cut(s)	501
Csp6I	GTAC	5 cut(s)	103, 252, 421, 693, 697
CviAII	CATG	3 cut(s)	340, 584, 700
CviQI	GTAC	5 cut(s)	103, 252, 421, 693, 697
DdeI	CTNAG	1 cut(s)	750
DpnI	GATC	2 cut(s)	273, 549
DpnII	GATC	2 cut(s)	271, 547
DraIII	CACNNNGTG	1 cut(s)	433
Eam1104I	CTCTTC	3 cut(s)	485, 584, 713
EarI	CTCTTC	3 cut(s)	485, 584, 713
Ecl136II	GAGCTC	1 cut(s)	416
Eco105I	TACGTA	1 cut(s)	696
Eco24I	GRGCYC	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	416
EcoRII	CCWGG	3 cut(s)	116, 314, 568
EcoT22I	ATGCAT	2 cut(s)	409, 589
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	3 cut(s)	343, 587, 703
FalI	AAGNNNNNCTT	4 cut(s)	159, 191, 635, 667
FaqI	GGGAC	2 cut(s)	26, 453
FatI	CATG	3 cut(s)	339, 583, 699
FauI	CCCGC	2 cut(s)	233, 455
Fnu4HI	GCNGC	2 cut(s)	83, 746
FokI	GGATG	1 cut(s)	257
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	2 cut(s)	83, 746
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	2 cut(s)	83, 746
GsaI	CCCAGC	1 cut(s)	661
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	503, 748
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	3 cut(s)	343, 587, 703
HinfI	GANTC	3 cut(s)	6, 89, 190
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	4 cut(s)	235, 377, 419, 617
Hpy166II	GTNNAC	2 cut(s)	219, 544
Hpy188I	TCNGA	2 cut(s)	19, 596
Hpy8I	GTNNAC	2 cut(s)	219, 544
HpyAV	CCTTC	3 cut(s)	115, 270, 757
HpyCH4III	ACNGT	3 cut(s)	160, 223, 541
HpyCH4IV	ACGT	2 cut(s)	78, 695
HpyCH4V	TGCA	7 cut(s)	112, 248, 296, 331, 343, 407, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 413
HpyF3I	CTNAG	1 cut(s)	750
HpySE526I	ACGT	2 cut(s)	78, 695
Hsp92II	CATG	3 cut(s)	343, 587, 703
Kzo9I	GATC	2 cut(s)	271, 547
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	1 cut(s)	275
MaeII	ACGT	2 cut(s)	78, 695
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	273, 549
MboI	GATC	2 cut(s)	271, 547
MboII	GAAGA	8 cut(s)	148, 167, 291, 472, 505, 508, 571, 730
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	402, 418
MluCI	AATT	3 cut(s)	139, 284, 456
MnlI	CCTC	7 cut(s)	4, 91, 121, 430, 507, 514, 587
Mph1103I	ATGCAT	2 cut(s)	409, 589
MroXI	GAANNNNTTC	1 cut(s)	578
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	4 cut(s)	44, 118, 316, 570
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	3 cut(s)	118, 316, 570
MwoI	GCNNNNNNNGC	2 cut(s)	203, 413
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	2 cut(s)	271, 547
NlaIII	CATG	3 cut(s)	343, 587, 703
NlaIV	GGNNCC	1 cut(s)	575
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	2 cut(s)	409, 589
NspI	RCATGY	2 cut(s)	343, 703
PaqCI	CACCTGC	1 cut(s)	716
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	3 cut(s)	6, 89, 190
PkrI	GCNGC	2 cut(s)	84, 747
Ppu21I	YACGTR	2 cut(s)	79, 696
Psp124BI	GAGCTC	1 cut(s)	418
Psp6I	CCWGG	3 cut(s)	116, 314, 568
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	3 cut(s)	116, 314, 568
PspN4I	GGNNCC	1 cut(s)	575
PspPI	GGNCC	1 cut(s)	501
RsaI	GTAC	5 cut(s)	104, 253, 422, 694, 698
RsaNI	GTAC	5 cut(s)	103, 252, 421, 693, 697
SacI	GAGCTC	1 cut(s)	418
SatI	GCNGC	2 cut(s)	83, 746
Sau3AI	GATC	2 cut(s)	271, 547
Sau96I	GGNCC	1 cut(s)	501
ScrFI	CCNGG	4 cut(s)	44, 118, 316, 570
SduI	GDGCHC	2 cut(s)	402, 418
SfaNI	GCATC	1 cut(s)	235
SnaBI	TACGTA	1 cut(s)	696
Sse9I	AATT	3 cut(s)	139, 284, 456
SsiI	CCGC	3 cut(s)	240, 462, 745
SspMI	CTAG	1 cut(s)	275
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	4 cut(s)	42, 116, 314, 568
TaaI	ACNGT	3 cut(s)	160, 223, 541
TaiI	ACGT	2 cut(s)	81, 698
TaqI	TCGA	2 cut(s)	9, 96
TasI	AATT	3 cut(s)	139, 284, 456
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	3 cut(s)	6, 89, 190
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	256
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	2 cut(s)	343, 703
XcmI	CCANNNNNNNNNTGG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	2 cut(s)	409, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.