Rmu_co8385993.1_g000001

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8385993.1
OG0001109
Physical Location & Seq
Reverse (-)
632 .. 1096
465 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8385993.1_g000001.1.cds

Sequence Viewer

Length: 465 bp
atggacacatggcaatactttgtgcaccgctacatgcatcagaacaagttcttgtaccgccatgtccactctcagcaccacagacttgttgttccctacgcaattggagccctttataaccacccacttgagggtctcttactcgacactttcggcggggctatctcttttctagtctcgggaatgactgcacggacggctgttatattcttctgctttgctgtgattaaaacagtagatgatcactgtggactttggttgcctggtaacatcttccacattttcttccagaacaatactgcttatcatgacattcatcatcagcttcagggcttgaagtataactattctcagccattcttcccgatatgggataaaatttttggaacttacatgccttacagtcttgtaaagagacctgaagggggttttgaagcgaaggcaatgaaagcaatgcaagactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 map00600 map01100
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

154

Amino Acids

18.03

Weight (kDa)

8.53

Isoelectric Point (pI)

43.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 117
AciI CCGC 3 cut(s) 28, 58, 156
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 2 cut(s) 311, 441
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 4 cut(s) 130, 131, 370, 425
AgsI TTSAA 2 cut(s) 337, 434
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 1 cut(s) 325
AluI AGCT 1 cut(s) 325
Alw21I GWGCWC 1 cut(s) 27
Alw26I GTCTC 3 cut(s) 140, 181, 409
Alw44I GTGCAC 1 cut(s) 23
Ama87I CYCGRG 1 cut(s) 178
ApaLI GTGCAC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 378
Asp700I GAANNNNTTC 1 cut(s) 47
AvaI CYCGRG 1 cut(s) 178
BaeGI GKGCMC 1 cut(s) 27
BanII GRGCYC 1 cut(s) 112
Bbv12I GWGCWC 1 cut(s) 27
BceAI ACGGC 1 cut(s) 213
BciT130I CCWGG 1 cut(s) 264
BclI TGATCA 1 cut(s) 241
BcoDI GTCTC 3 cut(s) 140, 181, 409
BfaI CTAG 2 cut(s) 173, 463
Bme1390I CCNGG 1 cut(s) 264
BmeT110I CYCGRG 1 cut(s) 178
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 46
BpuEI CTTGAG 1 cut(s) 149
BsaI GGTCTC 2 cut(s) 140, 409
Bsc4I CCNNNNNNNGG 4 cut(s) 130, 131, 370, 425
Bse3DI GCAATG 2 cut(s) 450, 459
BseBI CCWGG 1 cut(s) 264
BseLI CCNNNNNNNGG 4 cut(s) 130, 131, 370, 425
BseMI GCAATG 2 cut(s) 450, 459
BseMII CTCAG 2 cut(s) 86, 365
BseSI GKGCMC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 27
BsiHKCI CYCGRG 1 cut(s) 178
BslI CCNNNNNNNGG 4 cut(s) 130, 131, 370, 425
BsmAI GTCTC 3 cut(s) 140, 181, 409
Bso31I GGTCTC 2 cut(s) 140, 409
BsoBI CYCGRG 1 cut(s) 178
Bsp1286I GDGCHC 2 cut(s) 27, 112
Bsp143I GATC 1 cut(s) 241
BspACI CCGC 3 cut(s) 28, 58, 156
BspCNI CTCAG 2 cut(s) 85, 364
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 109
BspTNI GGTCTC 2 cut(s) 140, 409
BsrDI GCAATG 2 cut(s) 450, 459
BssMI GATC 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 3 cut(s) 235, 248, 404
BstDEI CTNAG 2 cut(s) 72, 351
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 3 cut(s) 140, 181, 409
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 3 cut(s) 107, 197, 449
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 37, 397
BstSCI CCNGG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 244
CciI TCATGA 1 cut(s) 307
Csp6I GTAC 1 cut(s) 55
CviAII CATG 5 cut(s) 9, 34, 62, 308, 394
CviJI RGCY 6 cut(s) 110, 161, 200, 325, 333, 355
CviKI_1 RGCY 6 cut(s) 110, 161, 200, 325, 333, 355
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 2 cut(s) 72, 351
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eco24I GRGCYC 1 cut(s) 112
Eco31I GGTCTC 2 cut(s) 140, 409
Eco57I CTGAAG 2 cut(s) 311, 441
Eco88I CYCGRG 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 112
FaeI CATG 5 cut(s) 12, 37, 65, 311, 397
FaiI YATR 9 cut(s) 10, 35, 63, 117, 206, 309, 342, 370, 395
FatI CATG 5 cut(s) 8, 33, 61, 307, 393
FauI CCCGC 1 cut(s) 149
FbaI TGATCA 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 112
FspBI CTAG 2 cut(s) 173, 463
Hin1II CATG 5 cut(s) 12, 37, 65, 311, 397
Hpy166II GTNNAC 3 cut(s) 25, 67, 251
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 4 cut(s) 180, 289, 308, 364
Hpy8I GTNNAC 3 cut(s) 25, 67, 251
HpyAV CCTTC 2 cut(s) 416, 433
HpyCH4III ACNGT 3 cut(s) 235, 248, 404
HpyCH4V TGCA 4 cut(s) 25, 37, 191, 457
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 197, 449
HpyF3I CTNAG 2 cut(s) 72, 351
Hsp92II CATG 5 cut(s) 12, 37, 65, 311, 397
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 1 cut(s) 241
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 249, 276, 302, 314, 432
LweI GCATC 1 cut(s) 46
MaeI CTAG 2 cut(s) 173, 463
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 4 cut(s) 202, 265, 277, 352
MfeI CAATTG 1 cut(s) 102
MhlI GDGCHC 2 cut(s) 27, 112
MluCI AATT 2 cut(s) 102, 378
MnlI CCTC 1 cut(s) 124
Mph1103I ATGCAT 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 264
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 107, 197, 449
NdeII GATC 1 cut(s) 241
NlaIII CATG 5 cut(s) 12, 37, 65, 311, 397
NlaIV GGNNCC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 39
NspI RCATGY 2 cut(s) 37, 397
PagI TCATGA 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 47
PsiI TTATAA 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 109
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 2 cut(s) 27, 112
SetI ASST 2 cut(s) 327, 421
SfaNI GCATC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 2 cut(s) 102, 378
SsiI CCGC 3 cut(s) 28, 58, 156
SspMI CTAG 2 cut(s) 173, 463
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 3 cut(s) 235, 248, 404
TaqI TCGA 1 cut(s) 144
TasI AATT 2 cut(s) 102, 378
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 305, 461
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 1 cut(s) 251
VneI GTGCAC 1 cut(s) 23
XapI RAATTY 1 cut(s) 378
XceI RCATGY 2 cut(s) 37, 397
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 2 cut(s) 173, 463
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.