Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

27970051 .. 27972496

Gene Structure 2446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G273200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGATTTGAGGTTTCTGATGAGCTATTGGGAACTTTCGTCCCAGTTTTGATATATTGGGCGTACTCGGGGATTTATGTGGTTCTGGATTCGTTTGAGAACTACCGGCTTCACACGAGGAAAGACGAAGATGAGAAGAATTTGGTGTCCAAGAGAACGGTGGTCAAAGGGGTTCTTCTTCAGCAAACCATTCAGGCTATTGTTGCTATCCTCCTGTTTACGGTGACGGGAAATGATGATGGGGATTCAGGTGTAAAGCCTTCTTTCATTGATCTAGCAAGACAGTTTGTTACTGCAATGATTGTTTTGGATACCTGGCAATACTTTATGCACAGATACATGCATCACAACAAGTTTTTATACAAACATATCCATTCCCAACATCACCGGCTTGTTGTGCCCTATGCATTTGGAGCTCTGTACAATCACCCTGTGGAGGGACTTCTTCTTGACACAATTGGTGGAGCCTTATCTTTTCTCCTCTCTGGCATGTCTCCTAGAGCCTCCATATTCTTCTTCTCCTTTGCCACCATCAAAACCGTAGACGACCATTGTGGATTATGGCTTCCGGGGAACCTGTTCCATGTATTTTTCAGTAATAATACTGCTTACCATGATGTCCACCACCAGCTCTATGGAAGCAAGTACAACTTCTCCCAGCCGTTCTTTGTTATGTGGGATAGGATACTTGGTACCCATATGCCTTACTCATTAGAGAAGAGAGCAGGTGGGGGATTTGAAGTGCGGCCTAAGAAAGTAGACAAGGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0030148 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042284 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0046520 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

258

Amino Acids

29.55

Weight (kDa)

6.95

Isoelectric Point (pI)

33.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	716
Acc36I	ACCTGC	1 cut(s)	716
Acc65I	GGTACC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	543, 759
AciI	CCGC	1 cut(s)	745
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	164
AdeI	CACNNNGTG	1 cut(s)	433
AfaI	GTAC	4 cut(s)	65, 422, 647, 694
AfiI	CCNNNNNNNGG	3 cut(s)	220, 436, 437
AgsI	TTSAA	1 cut(s)	740
AjnI	CCWGG	1 cut(s)	314
AluBI	AGCT	3 cut(s)	25, 416, 631
AluI	AGCT	3 cut(s)	25, 416, 631
Alw21I	GWGCWC	1 cut(s)	418
Alw26I	GTCTC	1 cut(s)	498
Ama87I	CYCGRG	1 cut(s)	67
AoxI	GGCC	1 cut(s)	746
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	578
Asp718I	GGTACC	1 cut(s)	692
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	235, 377, 419
AvaI	CYCGRG	1 cut(s)	67
BaeGI	GKGCMC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	418
BauI	CACGAG	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	418
BccI	CCATC	2 cut(s)	233, 539
BceAI	ACGGC	1 cut(s)	646
BciT130I	CCWGG	1 cut(s)	316
BciVI	GTATCC	2 cut(s)	304, 678
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	498
BfaI	CTAG	2 cut(s)	275, 498
BfuAI	ACCTGC	1 cut(s)	716
BfuI	GTATCC	2 cut(s)	304, 678
BisI	GCNGC	1 cut(s)	746
BlsI	GCNGC	1 cut(s)	747
Bme1390I	CCNGG	2 cut(s)	316, 570
BmeT110I	CYCGRG	1 cut(s)	67
BmiI	GGNNCC	3 cut(s)	466, 575, 694
BmrFI	CCNGG	2 cut(s)	316, 570
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	38
BpuMI	CCSGG	1 cut(s)	570
BsaJI	CCNNGG	1 cut(s)	569
BsaXI	ACNNNNNCTCC	2 cut(s)	638, 668
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 436, 437
Bse118I	RCCGGY	2 cut(s)	105, 387
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	569
BseLI	CCNNNNNNNGG	3 cut(s)	220, 436, 437
BseMI	GCAATG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	470
BseSI	GKGCMC	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	657
BshFI	GGCC	1 cut(s)	748
BshNI	GGYRCC	1 cut(s)	692
BsiHKAI	GWGCWC	1 cut(s)	418
BsiHKCI	CYCGRG	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	106, 388, 569
BslFI	GGGAC	2 cut(s)	26, 453
BslI	CCNNNNNNNGG	3 cut(s)	220, 436, 437
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	2 cut(s)	26, 453
BsnI	GGCC	1 cut(s)	748
BsoBI	CYCGRG	1 cut(s)	67
Bsp1286I	GDGCHC	2 cut(s)	402, 418
Bsp1407I	TGTACA	1 cut(s)	420
Bsp143I	GATC	1 cut(s)	271
BspACI	CCGC	1 cut(s)	745
BspANI	GGCC	1 cut(s)	748
BspLI	GGNNCC	3 cut(s)	466, 575, 694
BspMI	ACCTGC	1 cut(s)	716
BspT107I	GGYRCC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	2 cut(s)	105, 387
BsrGI	TGTACA	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	2 cut(s)	105, 387
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	1 cut(s)	271
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	4 cut(s)	160, 223, 285, 541
Bst6I	CTCTTC	1 cut(s)	713
BstAUI	TGTACA	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	750
BstKTI	GATC	1 cut(s)	274
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	1 cut(s)	271
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 397, 413
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	2 cut(s)	343, 493
BstSCI	CCNGG	2 cut(s)	314, 568
BstSLI	GKGCMC	1 cut(s)	402
BstXI	CCANNNNNNTGG	1 cut(s)	635
BsuI	GTATCC	2 cut(s)	304, 678
BsuRI	GGCC	1 cut(s)	748
BveI	ACCTGC	1 cut(s)	716
Cfr10I	RCCGGY	2 cut(s)	105, 387
Csp6I	GTAC	4 cut(s)	64, 421, 646, 693
CviAII	CATG	4 cut(s)	340, 490, 584, 614
CviQI	GTAC	4 cut(s)	64, 421, 646, 693
DdeI	CTNAG	1 cut(s)	750
DpnI	GATC	1 cut(s)	273
DpnII	GATC	1 cut(s)	271
DraIII	CACNNNGTG	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	416
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	314
EcoT22I	ATGCAT	2 cut(s)	345, 409
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	4 cut(s)	343, 493, 587, 617
FalI	AAGNNNNNCTT	4 cut(s)	159, 191, 635, 667
FaqI	GGGAC	2 cut(s)	26, 453
FatI	CATG	4 cut(s)	339, 489, 583, 613
FauNDI	CATATG	1 cut(s)	699
FblI	GTMKAC	2 cut(s)	543, 759
Fnu4HI	GCNGC	1 cut(s)	746
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	1 cut(s)	746
FspBI	CTAG	2 cut(s)	275, 498
GluI	GCNGC	1 cut(s)	746
GsaI	CCCAGC	1 cut(s)	661
HaeIII	GGCC	1 cut(s)	748
HapII	CCGG	3 cut(s)	106, 388, 569
Hin1II	CATG	4 cut(s)	343, 493, 587, 617
HinfI	GANTC	2 cut(s)	89, 245
HpaII	CCGG	3 cut(s)	106, 388, 569
HphI	GGTGA	3 cut(s)	235, 377, 419
Hpy166II	GTNNAC	4 cut(s)	219, 544, 622, 760
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	86, 449
Hpy8I	GTNNAC	4 cut(s)	219, 544, 622, 760
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	4 cut(s)	160, 223, 285, 541
HpyCH4V	TGCA	4 cut(s)	296, 331, 343, 407
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 397, 413
HpyF3I	CTNAG	1 cut(s)	750
Hsp92II	CATG	4 cut(s)	343, 493, 587, 617
KpnI	GGTACC	1 cut(s)	696
Kzo9I	GATC	1 cut(s)	271
LmnI	GCTCC	2 cut(s)	413, 464
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	2 cut(s)	275, 498
MaeIII	GTNAC	2 cut(s)	223, 289
MalI	GATC	1 cut(s)	273
MboI	GATC	1 cut(s)	271
MboII	GAAGA	8 cut(s)	140, 148, 167, 170, 437, 505, 508, 730
MfeI	CAATTG	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	402, 418
MluCI	AATT	3 cut(s)	139, 456, 769
MnlI	CCTC	6 cut(s)	4, 111, 221, 430, 491, 514
Mph1103I	ATGCAT	2 cut(s)	345, 409
MroXI	GAANNNNTTC	1 cut(s)	578
MspI	CCGG	3 cut(s)	106, 388, 569
MspR9I	CCNGG	2 cut(s)	316, 570
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	203, 397, 413
NciI	CCSGG	1 cut(s)	570
NdeI	CATATG	1 cut(s)	699
NdeII	GATC	1 cut(s)	271
NlaIII	CATG	4 cut(s)	343, 493, 587, 617
NlaIV	GGNNCC	3 cut(s)	466, 575, 694
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	2 cut(s)	345, 409
NspI	RCATGY	2 cut(s)	343, 493
PaqCI	CACCTGC	1 cut(s)	716
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	2 cut(s)	89, 245
PkrI	GCNGC	1 cut(s)	747
Psp124BI	GAGCTC	1 cut(s)	418
Psp6I	CCWGG	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	3 cut(s)	466, 575, 694
RsaI	GTAC	4 cut(s)	65, 422, 647, 694
RsaNI	GTAC	4 cut(s)	64, 421, 646, 693
SacI	GAGCTC	1 cut(s)	418
SatI	GCNGC	1 cut(s)	746
Sau3AI	GATC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	316, 570
SduI	GDGCHC	2 cut(s)	402, 418
SetI	ASST	8 cut(s)	15, 27, 253, 317, 418, 579, 633, 730
SfaNI	GCATC	1 cut(s)	352
Sse9I	AATT	3 cut(s)	139, 456, 769
SsiI	CCGC	1 cut(s)	745
SspMI	CTAG	2 cut(s)	275, 498
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	2 cut(s)	314, 568
TaaI	ACNGT	4 cut(s)	160, 223, 285, 541
TasI	AATT	3 cut(s)	139, 456, 769
TatI	WGTACW	2 cut(s)	420, 645
TauI	GCSGC	1 cut(s)	748
TfiI	GAWTC	2 cut(s)	89, 245
TseFI	GTSAC	1 cut(s)	223
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	256
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	2 cut(s)	343, 493
XcmI	CCANNNNNNNNNTGG	2 cut(s)	157, 632
XmiI	GTMKAC	2 cut(s)	543, 759
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	2 cut(s)	275, 498
Zsp2I	ATGCAT	2 cut(s)	345, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.