Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Reverse (-)

2554746 .. 2555495

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1032600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCATTTGAAGTTTCAGATGAGTTATTGGTGATATTTGTCCCAATACTCGTATACTGGATTTACGCTGGAGTTCTTCATTTCATGGAATTCAGATTTCCGAAATTCAAAATCCCAGCAGTGAAAGAGTCGCAAGACAAAAACCTCGTCTCCCAACCAACTGTGATCGTCGGCGTTTTGCTCCAGCAGTTTGGGCAGGCTACGATAGCGGGGCTGATGTTCTGGTTGACAGGCCAGACCACTCAAGGCCATGCAGCTGCAACCCTCATGATGCTGTTACGCGCAGGGGTCCAATTTTTCTTTGCGATGCTTGTCTTGGACACGTGGCAGTACTTCATGCATCGATGCATGCACGAAAACAAGGTGCTTTACAAGTACATACACTCCCGCCACCATAGGCTGGTGGCACCGTATGCATATGGAGCACTGTACAACCACCCCATAGAGGGGCTGATAGTGGACACCATGAGTGGTGCCGTCAGCTTTTTGGCGTCCGGCATGTCTCCGAGGATGTCAATCTTTTTCTTCTCGTTGGCCACCGTCAAGGCAGTGGACGACCACTGTGGAATGTGGATTCCGTGGCATCCTTTCCACTTGGTGTTCAGAAACAACAGCCACTACCACACCATCCACCATTCCCTGCACGGGACCAAACACAACTACTCCCAGCCATTCTTCGTGTTCTGGGATAGGATATTTGGCACCTACTACGTGCCGCGTGGTGATGAGGAGGAGGAGAAGAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

250

Amino Acids

28.94

Weight (kDa)

7.32

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	100 - 235	7.2e-25	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	406, 473, 701
AccB7I	CCANNNNNTGG	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	2 cut(s)	282, 718
AciI	CCGC	3 cut(s)	209, 388, 716
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	2 cut(s)	89, 104
AcvI	CACGTG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	491
AdeI	CACNNNGTG	1 cut(s)	598
AfaI	GTAC	3 cut(s)	332, 377, 431
AfiI	CCNNNNNNNGG	5 cut(s)	400, 445, 446, 447, 645
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	11, 109
AluBI	AGCT	2 cut(s)	257, 483
AluI	AGCT	2 cut(s)	257, 483
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	2 cut(s)	154, 507
AoxI	GGCC	3 cut(s)	232, 247, 534
ApeKI	GCWGC	2 cut(s)	254, 257
ApoI	RAATTY	2 cut(s)	89, 104
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AspLEI	GCGC	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	289, 648
AsuHPI	GGTGA	2 cut(s)	43, 734
AvaII	GGWCC	2 cut(s)	289, 648
BalI	TGGCCA	1 cut(s)	536
BanI	GGYRCC	3 cut(s)	406, 473, 701
BbrPI	CACGTG	1 cut(s)	324
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	244, 266
BccI	CCATC	1 cut(s)	635
BceAI	ACGGC	1 cut(s)	461
BcoDI	GTCTC	2 cut(s)	154, 507
BisI	GCNGC	3 cut(s)	255, 258, 716
BlsI	GCNGC	3 cut(s)	256, 259, 717
BmcAI	AGTACT	1 cut(s)	332
Bme18I	GGWCC	2 cut(s)	289, 648
BmgT120I	GGNCC	2 cut(s)	289, 648
BmiI	GGNNCC	5 cut(s)	290, 408, 475, 649, 703
BmsI	GCATC	5 cut(s)	261, 297, 335, 349, 592
BpmI	CTGGAG	2 cut(s)	90, 167
BpuEI	CTTGAG	1 cut(s)	228
Bsa29I	ATCGAT	1 cut(s)	343
BsaAI	YACGTR	2 cut(s)	324, 712
BsaBI	GATNNNNATC	1 cut(s)	515
BsaHI	GRCGYC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	506, 578
BsaXI	ACNNNNNCTCC	6 cut(s)	134, 164, 368, 398, 647, 677
Bsc4I	CCNNNNNNNGG	5 cut(s)	400, 445, 446, 447, 645
Bse1I	ACTGG	1 cut(s)	62
Bse8I	GATNNNNATC	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	506, 578
BseGI	GGATG	3 cut(s)	516, 583, 627
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	5 cut(s)	400, 445, 446, 447, 645
BseNI	ACTGG	1 cut(s)	62
BseRI	GAGGAG	3 cut(s)	743, 746, 749
BseXI	GCAGC	2 cut(s)	244, 266
BseYI	CCCAGC	2 cut(s)	115, 666
BsgI	GTGCAG	1 cut(s)	626
Bsh1236I	CGCG	2 cut(s)	282, 718
BshFI	GGCC	3 cut(s)	234, 249, 536
BshNI	GGYRCC	3 cut(s)	406, 473, 701
BshVI	ATCGAT	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	1 cut(s)	495
BslFI	GGGAC	2 cut(s)	26, 661
BslI	CCNNNNNNNGG	5 cut(s)	400, 445, 446, 447, 645
BsmAI	GTCTC	2 cut(s)	154, 507
BsmBI	CGTCTC	1 cut(s)	154
BsmFI	GGGAC	2 cut(s)	26, 661
BsnI	GGCC	3 cut(s)	234, 249, 536
Bsp1286I	GDGCHC	1 cut(s)	427
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	1 cut(s)	165
BspACI	CCGC	3 cut(s)	209, 388, 716
BspANI	GGCC	3 cut(s)	234, 249, 536
BspDI	ATCGAT	1 cut(s)	343
BspFNI	CGCG	2 cut(s)	282, 718
BspHI	TCATGA	1 cut(s)	267
BspLI	GGNNCC	5 cut(s)	290, 408, 475, 649, 703
BspT107I	GGYRCC	3 cut(s)	406, 473, 701
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	62
BssECI	CCNNGG	2 cut(s)	506, 578
BssMI	GATC	1 cut(s)	165
BssNAI	GTATAC	1 cut(s)	55
BssNI	GRCGYC	1 cut(s)	491
Bst1107I	GTATAC	1 cut(s)	55
Bst4CI	ACNGT	5 cut(s)	163, 411, 429, 541, 563
BstACI	GRCGYC	1 cut(s)	491
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstAUI	TGTACA	1 cut(s)	429
BstBAI	YACGTR	2 cut(s)	324, 712
BstC8I	GCNNGC	2 cut(s)	198, 350
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	3 cut(s)	516, 583, 627
BstFNI	CGCG	2 cut(s)	282, 718
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	154, 507
BstMBI	GATC	1 cut(s)	165
BstMWI	GCNNNNNNNGC	4 cut(s)	193, 206, 413, 422
BstNSI	RCATGY	2 cut(s)	352, 502
BstUI	CGCG	2 cut(s)	282, 718
BstV1I	GCAGC	2 cut(s)	244, 266
BstXI	CCANNNNNNTGG	1 cut(s)	191
BstZ17I	GTATAC	1 cut(s)	55
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	234, 249, 536
BsuTUI	ATCGAT	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	516, 583, 627
BtsI	GCAGTG	2 cut(s)	126, 555
BtsIMutI	CAGTG	4 cut(s)	126, 425, 555, 559
Cac8I	GCNNGC	2 cut(s)	198, 350
CciI	TCATGA	1 cut(s)	267
CfoI	GCGC	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	289, 648
ClaI	ATCGAT	1 cut(s)	343
CseI	GACGC	1 cut(s)	480
Csp6I	GTAC	3 cut(s)	331, 376, 430
CviAII	CATG	7 cut(s)	85, 251, 268, 337, 349, 466, 499
CviQI	GTAC	3 cut(s)	331, 376, 430
DpnI	GATC	1 cut(s)	167
DpnII	GATC	1 cut(s)	165
DraIII	CACNNNGTG	1 cut(s)	598
EaeI	YGGCCR	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	289, 648
Eco72I	CACGTG	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	89
EcoT22I	ATGCAT	3 cut(s)	342, 350, 418
Esp3I	CGTCTC	1 cut(s)	154
FaeI	CATG	7 cut(s)	88, 254, 271, 340, 352, 469, 502
FaqI	GGGAC	2 cut(s)	26, 661
FatI	CATG	7 cut(s)	84, 250, 267, 336, 348, 465, 498
FauI	CCCGC	2 cut(s)	202, 395
FauNDI	CATATG	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	255, 258, 716
FokI	GGATG	3 cut(s)	523, 570, 614
Fsp4HI	GCNGC	3 cut(s)	255, 258, 716
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	3 cut(s)	255, 258, 716
GsaI	CCCAGC	2 cut(s)	119, 670
GsuI	CTGGAG	2 cut(s)	90, 167
HaeIII	GGCC	3 cut(s)	234, 249, 536
HapII	CCGG	1 cut(s)	495
HgaI	GACGC	1 cut(s)	480
HhaI	GCGC	1 cut(s)	284
Hin1I	GRCGYC	1 cut(s)	491
Hin1II	CATG	7 cut(s)	88, 254, 271, 340, 352, 469, 502
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	128, 574
HpaII	CCGG	1 cut(s)	495
HphI	GGTGA	2 cut(s)	43, 734
Hpy166II	GTNNAC	4 cut(s)	55, 228, 460, 553
Hpy188I	TCNGA	5 cut(s)	19, 95, 102, 507, 605
Hpy188III	TCNNGA	1 cut(s)	268
Hpy8I	GTNNAC	4 cut(s)	55, 228, 460, 553
Hpy99I	CGWCG	1 cut(s)	173
HpyCH4III	ACNGT	5 cut(s)	163, 411, 429, 541, 563
HpyCH4IV	ACGT	2 cut(s)	323, 711
HpyCH4V	TGCA	7 cut(s)	254, 260, 340, 348, 352, 416, 643
HpyF10VI	GCNNNNNNNGC	4 cut(s)	193, 206, 413, 422
HpySE526I	ACGT	2 cut(s)	323, 711
Hsp92I	GRCGYC	1 cut(s)	491
Hsp92II	CATG	7 cut(s)	88, 254, 271, 340, 352, 469, 502
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	1 cut(s)	165
LmnI	GCTCC	2 cut(s)	186, 422
Lsp1109I	GCAGC	2 cut(s)	244, 266
LweI	GCATC	5 cut(s)	261, 297, 335, 349, 592
MaeII	ACGT	2 cut(s)	323, 711
MaeIII	GTNAC	1 cut(s)	276
MalI	GATC	1 cut(s)	167
MboI	GATC	1 cut(s)	165
MboII	GAAGA	3 cut(s)	68, 517, 667
MhlI	GDGCHC	1 cut(s)	427
MlsI	TGGCCA	1 cut(s)	536
MluCI	AATT	3 cut(s)	89, 104, 293
MluNI	TGGCCA	1 cut(s)	536
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	7 cut(s)	155, 275, 439, 501, 721, 724, 727
Mox20I	TGGCCA	1 cut(s)	536
Mph1103I	ATGCAT	3 cut(s)	342, 350, 418
MscI	TGGCCA	1 cut(s)	536
Msp20I	TGGCCA	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	1 cut(s)	495
MvnI	CGCG	2 cut(s)	282, 718
MwoI	GCNNNNNNNGC	4 cut(s)	193, 206, 413, 422
NdeI	CATATG	1 cut(s)	418
NdeII	GATC	1 cut(s)	165
NlaIII	CATG	7 cut(s)	88, 254, 271, 340, 352, 469, 502
NlaIV	GGNNCC	5 cut(s)	290, 408, 475, 649, 703
NsiI	ATGCAT	3 cut(s)	342, 350, 418
NspI	RCATGY	2 cut(s)	352, 502
PaeI	GCATGC	1 cut(s)	352
PagI	TCATGA	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	574
PflMI	CCANNNNNTGG	1 cut(s)	400
PkrI	GCNGC	3 cut(s)	256, 259, 717
PleI	GAGTC	1 cut(s)	136
PmaCI	CACGTG	1 cut(s)	324
PmlI	CACGTG	1 cut(s)	324
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	2 cut(s)	324, 712
PspCI	CACGTG	1 cut(s)	324
PspFI	CCCAGC	2 cut(s)	115, 666
PspN4I	GGNNCC	5 cut(s)	290, 408, 475, 649, 703
PspPI	GGNCC	2 cut(s)	289, 648
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	3 cut(s)	332, 377, 431
RsaNI	GTAC	3 cut(s)	331, 376, 430
SatI	GCNGC	3 cut(s)	255, 258, 716
Sau3AI	GATC	1 cut(s)	165
Sau96I	GGNCC	2 cut(s)	289, 648
ScaI	AGTACT	1 cut(s)	332
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	427
SetI	ASST	7 cut(s)	147, 259, 326, 366, 485, 707, 714
SfaNI	GCATC	5 cut(s)	261, 297, 335, 349, 592
SinI	GGWCC	2 cut(s)	289, 648
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	352
Sse9I	AATT	3 cut(s)	89, 104, 293
SsiI	CCGC	3 cut(s)	209, 388, 716
TaaI	ACNGT	5 cut(s)	163, 411, 429, 541, 563
TaiI	ACGT	2 cut(s)	326, 714
TaqI	TCGA	1 cut(s)	343
TasI	AATT	3 cut(s)	89, 104, 293
TatI	WGTACW	3 cut(s)	330, 375, 429
TauI	GCSGC	1 cut(s)	718
TfiI	GAWTC	1 cut(s)	574
TscAI	CASTG	4 cut(s)	126, 432, 555, 566
TseI	GCWGC	2 cut(s)	254, 257
TspDTI	ATGAA	3 cut(s)	68, 73, 325
TspGWI	ACGGA	1 cut(s)	567
TspRI	CASTG	4 cut(s)	126, 432, 555, 566
Van91I	CCANNNNNTGG	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	289, 648
XapI	RAATTY	2 cut(s)	89, 104
XceI	RCATGY	2 cut(s)	352, 502
XmiI	GTMKAC	1 cut(s)	54
ZrmI	AGTACT	1 cut(s)	332
Zsp2I	ATGCAT	3 cut(s)	342, 350, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.