Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Reverse (-)

64914504 .. 64917150

Gene Structure 2647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG400400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGGATTTGAGGTTTCTGATGAGCTATTGGGAACTTTCGTCCCAGTTTTGATATATTGGGCATATTCAGGGATTTATGTGCTTCTGGATTCGTTTGACAAGTATCGACTACACACCAGGAAAGATGAGGATGAGAAGAATTTGGTGTCCAAGAGAACCGTGGTTAAAGGCGTTCTTCTTCAGCAGACCATTCAGGCCATTGTTGCTATCATTTTGTTCAAGGTGACAGGAGATGATGGTGCAGCTGCAAGTGTAAAGCCTTCATACATAGATCTAGCGAGACAGTTAGTTACTGCAATGTTGGTTTTGGATACCTGGCAATACTTTATGCACAGATACATGCATCACAACAAGTTCTTGTACAAGCATATTCATTCTCAACATCACCGGCTTGTTGTGCCCTATGCATTTGGAGCCTTATACAATCACCCTGTAGAGGGTCTTCTCCTTGATACAATTGGTGGGGCCTTATCATTTCTCCTCTCTGGTATGTCTCCTCGAGCCTCCATATTCTTCTTCTCCTTTGCCACCATCAAAACAGTAGACGATCATTGCGGATTATGGCTTCCCGGGAACCTCTTCCATGTACTTTTCAGAAACAATACTGCTTACCATGATGTCCACCATCAGCTCTATGGAAGCAAGTATAACTTCTCCCAGCCGTTCTTTGTCATGTGGGATAGAATACTTGGTACCTATATGCCGTACTCATTGGAGAAGAGAACAGGTGGGGGCTTTGAAGTACGACCTGCAAAAGAAGGGAAGGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006629 GO:0006643 GO:0006665 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009640 GO:0009791 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016705 GO:0030148 GO:0031984 GO:0032501 GO:0032502 GO:0042175 GO:0042284 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046467 GO:0046519 GO:0046520 GO:0048856 GO:0050896 GO:0055114 GO:0071704 GO:0097164 GO:0098827 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

257

Amino Acids

29.5

Weight (kDa)

8.48

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	97 - 232	2.5e-25	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	757
Acc65I	GGTACC	1 cut(s)	692
AccB1I	GGYRCC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	543
AciI	CCGC	1 cut(s)	555
AcsI	RAATTY	1 cut(s)	139
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	5 cut(s)	362, 588, 694, 707, 744
AfiI	CCNNNNNNNGG	2 cut(s)	436, 437
AgsI	TTSAA	2 cut(s)	220, 740
AjnI	CCWGG	2 cut(s)	116, 314
AluBI	AGCT	3 cut(s)	25, 245, 631
AluI	AGCT	3 cut(s)	25, 245, 631
Alw26I	GTCTC	2 cut(s)	274, 498
Ama87I	CYCGRG	2 cut(s)	498, 569
AoxI	GGCC	2 cut(s)	195, 465
ApeKI	GCWGC	2 cut(s)	242, 245
ApoI	RAATTY	1 cut(s)	139
Asp700I	GAANNNNTTC	1 cut(s)	578
Asp718I	GGTACC	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	465
AsuC2I	CCSGG	2 cut(s)	570, 571
AsuHPI	GGTGA	3 cut(s)	235, 377, 419
AvaI	CYCGRG	2 cut(s)	498, 569
BaeGI	GKGCMC	1 cut(s)	402
BanI	GGYRCC	1 cut(s)	692
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BbsI	GAAGAC	1 cut(s)	434
BbvI	GCAGC	2 cut(s)	232, 254
BccI	CCATC	3 cut(s)	230, 539, 633
BceAI	ACGGC	2 cut(s)	646, 688
BciT130I	CCWGG	2 cut(s)	118, 316
BciVI	GTATCC	1 cut(s)	304
BcnI	CCSGG	2 cut(s)	570, 571
BcoDI	GTCTC	2 cut(s)	274, 498
BfaI	CTAG	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	757
BfuI	GTATCC	1 cut(s)	304
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	2 cut(s)	243, 246
BlsI	GCNGC	2 cut(s)	244, 247
Bme1390I	CCNGG	4 cut(s)	118, 316, 570, 571
BmeT110I	CYCGRG	2 cut(s)	498, 569
BmgT120I	GGNCC	1 cut(s)	465
BmiI	GGNNCC	4 cut(s)	415, 466, 575, 694
BmrFI	CCNGG	4 cut(s)	118, 316, 570, 571
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	352
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	434
BpuMI	CCSGG	2 cut(s)	570, 571
BsaJI	CCNNGG	2 cut(s)	159, 569
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 437
Bse118I	RCCGGY	1 cut(s)	387
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	2 cut(s)	303, 550
BseBI	CCWGG	2 cut(s)	118, 316
BseDI	CCNNGG	2 cut(s)	159, 569
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	2 cut(s)	436, 437
BseMI	GCAATG	2 cut(s)	303, 550
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	2 cut(s)	470, 486
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	2 cut(s)	232, 254
BseYI	CCCAGC	1 cut(s)	657
BsgI	GTGCAG	1 cut(s)	261
BshFI	GGCC	2 cut(s)	197, 467
BshNI	GGYRCC	1 cut(s)	692
BsiHKCI	CYCGRG	2 cut(s)	498, 569
BsiSI	CCGG	2 cut(s)	388, 570
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	436, 437
BsmAI	GTCTC	2 cut(s)	274, 498
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	2 cut(s)	197, 467
BsoBI	CYCGRG	2 cut(s)	498, 569
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	271, 547
BspACI	CCGC	1 cut(s)	555
BspANI	GGCC	2 cut(s)	197, 467
BspLI	GGNNCC	4 cut(s)	415, 466, 575, 694
BspMI	ACCTGC	1 cut(s)	757
BspT107I	GGYRCC	1 cut(s)	692
BsrDI	GCAATG	2 cut(s)	303, 550
BsrFI	RCCGGY	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	44
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	159, 569
BssMI	GATC	2 cut(s)	271, 547
Bst2UI	CCWGG	2 cut(s)	118, 316
Bst4CI	ACNGT	3 cut(s)	160, 285, 541
Bst6I	CTCTTC	2 cut(s)	584, 713
BstAUI	TGTACA	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	274, 550
BstMAI	GTCTC	2 cut(s)	274, 498
BstMBI	GATC	2 cut(s)	271, 547
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 397, 413
BstNI	CCWGG	2 cut(s)	118, 316
BstNSI	RCATGY	1 cut(s)	343
BstSCI	CCNGG	4 cut(s)	116, 314, 568, 569
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	402
BstV1I	GCAGC	2 cut(s)	232, 254
BstV2I	GAAGAC	1 cut(s)	434
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuI	GTATCC	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	197, 467
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	757
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	465
Cfr9I	CCCGGG	1 cut(s)	569
Csp6I	GTAC	5 cut(s)	361, 587, 693, 706, 743
CviAII	CATG	4 cut(s)	340, 584, 614, 673
CviQI	GTAC	5 cut(s)	361, 587, 693, 706, 743
DpnI	GATC	2 cut(s)	273, 549
DpnII	GATC	2 cut(s)	271, 547
Eam1104I	CTCTTC	2 cut(s)	584, 713
EarI	CTCTTC	2 cut(s)	584, 713
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	2 cut(s)	498, 569
EcoO109I	RGGNCCY	1 cut(s)	465
EcoRII	CCWGG	2 cut(s)	116, 314
EcoT22I	ATGCAT	2 cut(s)	345, 409
FaeI	CATG	4 cut(s)	343, 587, 617, 676
FalI	AAGNNNNNCTT	4 cut(s)	159, 191, 635, 667
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	4 cut(s)	339, 583, 613, 672
FblI	GTMKAC	1 cut(s)	543
Fnu4HI	GCNGC	2 cut(s)	243, 246
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	2 cut(s)	243, 246
FspBI	CTAG	1 cut(s)	275
GluI	GCNGC	2 cut(s)	243, 246
GsaI	CCCAGC	1 cut(s)	661
HaeIII	GGCC	2 cut(s)	197, 467
HapII	CCGG	2 cut(s)	388, 570
Hin1II	CATG	4 cut(s)	343, 587, 617, 676
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	2 cut(s)	388, 570
HphI	GGTGA	3 cut(s)	235, 377, 419
Hpy166II	GTNNAC	2 cut(s)	544, 622
Hpy188I	TCNGA	2 cut(s)	19, 596
Hpy188III	TCNNGA	1 cut(s)	86
Hpy8I	GTNNAC	2 cut(s)	544, 622
HpyAV	CCTTC	3 cut(s)	270, 752, 757
HpyCH4III	ACNGT	3 cut(s)	160, 285, 541
HpyCH4V	TGCA	7 cut(s)	242, 248, 296, 331, 343, 407, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 397, 413
Hsp92II	CATG	4 cut(s)	343, 587, 617, 676
KpnI	GGTACC	1 cut(s)	696
Kzo9I	GATC	2 cut(s)	271, 547
LmnI	GCTCC	1 cut(s)	413
Lsp1109I	GCAGC	2 cut(s)	232, 254
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	275
MaeIII	GTNAC	2 cut(s)	223, 289
MalI	GATC	2 cut(s)	273, 549
MboI	GATC	2 cut(s)	271, 547
MboII	GAAGA	8 cut(s)	148, 167, 170, 434, 505, 508, 571, 730
MfeI	CAATTG	1 cut(s)	456
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	2 cut(s)	139, 456
MnlI	CCTC	7 cut(s)	4, 121, 430, 491, 507, 514, 587
Mph1103I	ATGCAT	2 cut(s)	345, 409
MroXI	GAANNNNTTC	1 cut(s)	578
MseI	TTAA	1 cut(s)	165
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	2 cut(s)	388, 570
MspR9I	CCNGG	4 cut(s)	118, 316, 570, 571
MunI	CAATTG	1 cut(s)	456
MvaI	CCWGG	2 cut(s)	118, 316
MwoI	GCNNNNNNNGC	3 cut(s)	203, 397, 413
NciI	CCSGG	2 cut(s)	570, 571
NdeII	GATC	2 cut(s)	271, 547
NlaIII	CATG	4 cut(s)	343, 587, 617, 676
NlaIV	GGNNCC	4 cut(s)	415, 466, 575, 694
NmuCI	GTSAC	1 cut(s)	223
NsiI	ATGCAT	2 cut(s)	345, 409
NspI	RCATGY	1 cut(s)	343
PaeR7I	CTCGAG	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	578
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	244, 247
Psp6I	CCWGG	2 cut(s)	116, 314
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	2 cut(s)	116, 314
PspN4I	GGNNCC	4 cut(s)	415, 466, 575, 694
PspPI	GGNCC	1 cut(s)	465
PspXI	VCTCGAGB	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	5 cut(s)	362, 588, 694, 707, 744
RsaNI	GTAC	5 cut(s)	361, 587, 693, 706, 743
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	2 cut(s)	243, 246
Sau3AI	GATC	2 cut(s)	271, 547
Sau96I	GGNCC	1 cut(s)	465
ScrFI	CCNGG	4 cut(s)	118, 316, 570, 571
SduI	GDGCHC	1 cut(s)	402
SfaNI	GCATC	1 cut(s)	352
SfcI	CTRYAG	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	498
SmaI	CCCGGG	1 cut(s)	571
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	2 cut(s)	139, 456
SsiI	CCGC	1 cut(s)	555
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	4 cut(s)	116, 314, 568, 569
TaaI	ACNGT	3 cut(s)	160, 285, 541
TaqI	TCGA	2 cut(s)	106, 499
TasI	AATT	2 cut(s)	139, 456
TatI	WGTACW	2 cut(s)	360, 586
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	242, 245
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	252, 362
TspMI	CCCGGG	1 cut(s)	569
XapI	RAATTY	1 cut(s)	139
XceI	RCATGY	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	2 cut(s)	157, 632
XhoI	CTCGAG	1 cut(s)	498
XmaI	CCCGGG	1 cut(s)	569
XmiI	GTMKAC	1 cut(s)	543
XmnI	GAANNNNTTC	1 cut(s)	578
XspI	CTAG	1 cut(s)	275
Zsp2I	ATGCAT	2 cut(s)	345, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.