Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Reverse (-)

1668095 .. 1668628

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g02680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTCTGGTTGACCAGCCAGACCACTAAAGGCCATGCAGTTGCAACCCTCATGACGATGTTACGCGCAGGGGTCCAATTTTTCTTTGCAATGCTTGTCTTGGACACATGGCAGTACTTCATGCATCGATGCATGCACGAAAACAAGGTGCTTTACAAGTACATACACTTCCGCCACCATAGGTTGGTGGCGCCATATGCATACGGAGCACTGTACAACCACCCCATCGAGGGGCTGCTAGTAGACACCATGAGTGGTGCCGTTAGCTTTCTGGCATCCGGCATGTCTCCAAGGATGTCAATCTTTTTCTTCTCGTTGGCCACCGTAAAGGCAGTGGACGACCACTGTGGAATGTGGATTCCGTGGCATCCTTTCCACTTGGTGTTTAGAAACAACAGCCACTACCACACCGTCCACCATTCCCTGCACGGGACCAAACACAACTACTCCCAGCCATTCTTCGTGTTCTGGGATAGGATATTTGGCACCTACTACGTGCCGCGTGGTGATGATGAGGAGGAGAAGAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

178

Amino Acids

20.88

Weight (kDa)

8.55

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	28 - 163	1.5e-24	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	190, 257, 485
AccB7I	CCANNNNNTGG	1 cut(s)	184
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	2 cut(s)	66, 502
AciI	CCGC	2 cut(s)	172, 500
AcoI	YGGCCR	1 cut(s)	318
AcyI	GRCGYC	1 cut(s)	191
AdeI	CACNNNGTG	1 cut(s)	382
AfaI	GTAC	3 cut(s)	116, 161, 215
AfiI	CCNNNNNNNGG	5 cut(s)	184, 229, 230, 231, 429
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw21I	GWGCWC	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	291
AoxI	GGCC	2 cut(s)	31, 318
ApeKI	GCWGC	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	68, 193
AspS9I	GGNCC	2 cut(s)	73, 432
AsuHPI	GGTGA	1 cut(s)	518
AvaII	GGWCC	2 cut(s)	73, 432
BalI	TGGCCA	1 cut(s)	320
BanI	GGYRCC	3 cut(s)	190, 257, 485
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
Bbv12I	GWGCWC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	2 cut(s)	236, 500
BlsI	GCNGC	2 cut(s)	237, 501
BmcAI	AGTACT	1 cut(s)	116
Bme18I	GGWCC	2 cut(s)	73, 432
BmgT120I	GGNCC	2 cut(s)	73, 432
BmiI	GGNNCC	5 cut(s)	74, 192, 259, 433, 487
BmsI	GCATC	4 cut(s)	119, 133, 284, 376
Bsa29I	ATCGAT	1 cut(s)	127
BsaAI	YACGTR	1 cut(s)	496
BsaBI	GATNNNNATC	1 cut(s)	299
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	290, 362
BsaXI	ACNNNNNCTCC	2 cut(s)	431, 461
Bsc4I	CCNNNNNNNGG	5 cut(s)	184, 229, 230, 231, 429
Bse3DI	GCAATG	1 cut(s)	96
Bse8I	GATNNNNATC	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	127
BseDI	CCNNGG	2 cut(s)	290, 362
BseGI	GGATG	3 cut(s)	275, 300, 367
BseJI	GATNNNNATC	1 cut(s)	299
BseLI	CCNNNNNNNGG	5 cut(s)	184, 229, 230, 231, 429
BseMI	GCAATG	1 cut(s)	96
BseRI	GAGGAG	2 cut(s)	530, 533
BseXI	GCAGC	1 cut(s)	222
BseYI	CCCAGC	1 cut(s)	450
BsgI	GTGCAG	1 cut(s)	410
Bsh1236I	CGCG	2 cut(s)	66, 502
BshFI	GGCC	2 cut(s)	33, 320
BshNI	GGYRCC	3 cut(s)	190, 257, 485
BshVI	ATCGAT	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	445
BslI	CCNNNNNNNGG	5 cut(s)	184, 229, 230, 231, 429
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	2 cut(s)	33, 320
Bsp1286I	GDGCHC	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	213
BspACI	CCGC	2 cut(s)	172, 500
BspANI	GGCC	2 cut(s)	33, 320
BspDI	ATCGAT	1 cut(s)	127
BspFNI	CGCG	2 cut(s)	66, 502
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	5 cut(s)	74, 192, 259, 433, 487
BspT107I	GGYRCC	3 cut(s)	190, 257, 485
BsrDI	GCAATG	1 cut(s)	96
BsrGI	TGTACA	1 cut(s)	213
BssECI	CCNNGG	2 cut(s)	290, 362
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	290
Bst4CI	ACNGT	4 cut(s)	213, 325, 347, 412
BstACI	GRCGYC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	496
BstC8I	GCNNGC	1 cut(s)	134
BstDSI	CCRYGG	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	275, 300, 367
BstFNI	CGCG	2 cut(s)	66, 502
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	68, 193
BstMAI	GTCTC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 206
BstNSI	RCATGY	2 cut(s)	136, 286
BstUI	CGCG	2 cut(s)	66, 502
BstV1I	GCAGC	1 cut(s)	222
Bsu15I	ATCGAT	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	33, 320
BsuTUI	ATCGAT	1 cut(s)	127
BtgI	CCRYGG	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	275, 300, 367
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	209, 339, 343
Cac8I	GCNNGC	1 cut(s)	134
CciI	TCATGA	1 cut(s)	51
CfoI	GCGC	2 cut(s)	68, 193
Cfr13I	GGNCC	2 cut(s)	73, 432
ClaI	ATCGAT	1 cut(s)	127
Csp6I	GTAC	3 cut(s)	115, 160, 214
CviAII	CATG	7 cut(s)	35, 52, 108, 121, 133, 250, 283
CviJI	RGCY	7 cut(s)	18, 33, 235, 267, 320, 399, 454
CviKI_1	RGCY	7 cut(s)	18, 33, 235, 267, 320, 399, 454
CviQI	GTAC	3 cut(s)	115, 160, 214
DinI	GGCGCC	1 cut(s)	192
DraIII	CACNNNGTG	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	318
EciI	GGCGGA	1 cut(s)	161
Eco130I	CCWWGG	1 cut(s)	290
Eco47I	GGWCC	2 cut(s)	73, 432
EcoT14I	CCWWGG	1 cut(s)	290
EcoT22I	ATGCAT	3 cut(s)	126, 134, 202
EgeI	GGCGCC	1 cut(s)	192
EheI	GGCGCC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	290
FaeI	CATG	7 cut(s)	38, 55, 111, 124, 136, 253, 286
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	7 cut(s)	34, 51, 107, 120, 132, 249, 282
FauNDI	CATATG	1 cut(s)	196
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	236, 500
FokI	GGATG	3 cut(s)	262, 307, 354
Fsp4HI	GCNGC	2 cut(s)	236, 500
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	2 cut(s)	67, 192
GluI	GCNGC	2 cut(s)	236, 500
GsaI	CCCAGC	1 cut(s)	454
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	33, 320
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	2 cut(s)	68, 193
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	7 cut(s)	38, 55, 111, 124, 136, 253, 286
Hin6I	GCGC	2 cut(s)	66, 191
HinP1I	GCGC	2 cut(s)	66, 191
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	358
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	4 cut(s)	12, 244, 337, 415
Hpy188III	TCNNGA	1 cut(s)	52
Hpy8I	GTNNAC	4 cut(s)	12, 244, 337, 415
HpyCH4III	ACNGT	4 cut(s)	213, 325, 347, 412
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	8 cut(s)	38, 44, 89, 124, 132, 136, 200, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 206
HpySE526I	ACGT	1 cut(s)	495
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	7 cut(s)	38, 55, 111, 124, 136, 253, 286
HspAI	GCGC	2 cut(s)	66, 191
KasI	GGCGCC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	206
LpnPI	CCDG	8 cut(s)	28, 32, 54, 257, 292, 437, 454, 464
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	4 cut(s)	119, 133, 284, 376
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	60
MboII	GAAGA	2 cut(s)	301, 451
MhlI	GDGCHC	1 cut(s)	211
MlsI	TGGCCA	1 cut(s)	320
MluCI	AATT	1 cut(s)	77
MluNI	TGGCCA	1 cut(s)	320
Mly113I	GGCGCC	1 cut(s)	191
MnlI	CCTC	4 cut(s)	59, 223, 508, 511
Mox20I	TGGCCA	1 cut(s)	320
Mph1103I	ATGCAT	3 cut(s)	126, 134, 202
MscI	TGGCCA	1 cut(s)	320
MslI	CAYNNNNRTG	1 cut(s)	56
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	1 cut(s)	279
MvnI	CGCG	2 cut(s)	66, 502
MwoI	GCNNNNNNNGC	2 cut(s)	197, 206
NarI	GGCGCC	1 cut(s)	191
NdeI	CATATG	1 cut(s)	196
NlaIII	CATG	7 cut(s)	38, 55, 111, 124, 136, 253, 286
NlaIV	GGNNCC	5 cut(s)	74, 192, 259, 433, 487
NsiI	ATGCAT	3 cut(s)	126, 134, 202
NspI	RCATGY	2 cut(s)	136, 286
PaeI	GCATGC	1 cut(s)	136
PagI	TCATGA	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	237, 501
PluTI	GGCGCC	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	496
PspFI	CCCAGC	1 cut(s)	450
PspN4I	GGNNCC	5 cut(s)	74, 192, 259, 433, 487
PspPI	GGNCC	2 cut(s)	73, 432
RsaI	GTAC	3 cut(s)	116, 161, 215
RsaNI	GTAC	3 cut(s)	115, 160, 214
RseI	CAYNNNNRTG	1 cut(s)	56
SatI	GCNGC	2 cut(s)	236, 500
Sau96I	GGNCC	2 cut(s)	73, 432
ScaI	AGTACT	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	211
SetI	ASST	5 cut(s)	150, 185, 269, 491, 498
SfaNI	GCATC	4 cut(s)	119, 133, 284, 376
SfoI	GGCGCC	1 cut(s)	192
SinI	GGWCC	2 cut(s)	73, 432
SmiMI	CAYNNNNRTG	1 cut(s)	56
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	77
SsiI	CCGC	2 cut(s)	172, 500
SspDI	GGCGCC	1 cut(s)	190
SspMI	CTAG	1 cut(s)	239
StyI	CCWWGG	1 cut(s)	290
TaaI	ACNGT	4 cut(s)	213, 325, 347, 412
TaiI	ACGT	1 cut(s)	498
TaqI	TCGA	2 cut(s)	127, 228
TasI	AATT	1 cut(s)	77
TatI	WGTACW	3 cut(s)	114, 159, 213
TauI	GCSGC	1 cut(s)	502
TfiI	GAWTC	1 cut(s)	358
TscAI	CASTG	3 cut(s)	216, 339, 350
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	109
TspGWI	ACGGA	2 cut(s)	219, 351
TspRI	CASTG	3 cut(s)	216, 339, 350
Van91I	CCANNNNNTGG	1 cut(s)	184
VpaK11BI	GGWCC	2 cut(s)	73, 432
XceI	RCATGY	2 cut(s)	136, 286
XmiI	GTMKAC	1 cut(s)	243
XspI	CTAG	1 cut(s)	239
ZrmI	AGTACT	1 cut(s)	116
Zsp2I	ATGCAT	3 cut(s)	126, 134, 202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.