Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

18831033 .. 18831332

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG199700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGGCGGAGCCGTCAGCTTCTTGCTGTCGGGCATGTCTCCGCGGACTTCGATTTTCTTCTTCTCATTTGCAACCATCAAGGCATTGGACGACCACTCCGGTGTATGTAACTTTCCATGGCACCCGTTTCATGATCTGTTCAGAAACAACAGCTTGTATCATGATGTGCACCACCAGCTTTCGGGGACCAAGTTCAACTTCTCTCAGCCCTTCTTTGTGTTTTGGGATAGGATACTTGGTACCTACCACATGCCATCATCTGCTGAAGACGAGCTCAACAAGGAGGCCAAGAATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

99

Amino Acids

11.4

Weight (kDa)

6.63

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	6 - 81	1.8e-10	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	239
AccB1I	GGYRCC	2 cut(s)	120, 239
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	6, 41, 43
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	1 cut(s)	196
AjuI	GAANNNNNNNTTGG	2 cut(s)	182, 214
AleI	CACNNNNGTG	1 cut(s)	99
AluBI	AGCT	4 cut(s)	18, 153, 178, 274
AluI	AGCT	4 cut(s)	18, 153, 178, 274
Alw21I	GWGCWC	2 cut(s)	171, 276
Alw26I	GTCTC	1 cut(s)	42
Alw44I	GTGCAC	1 cut(s)	167
AoxI	GGCC	1 cut(s)	285
ApaLI	GTGCAC	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	186
BaeGI	GKGCMC	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	120, 239
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	273
Bbv12I	GWGCWC	2 cut(s)	171, 276
BccI	CCATC	2 cut(s)	83, 262
BciVI	GTATCC	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	42
BfuI	GTATCC	1 cut(s)	225
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	4 cut(s)	10, 122, 187, 241
BpiI	GAAGAC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	41, 116
BsaWI	WCCGGW	1 cut(s)	98
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	41, 116
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	218
BseSI	GKGCMC	1 cut(s)	171
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	2 cut(s)	120, 239
BsiHKAI	GWGCWC	2 cut(s)	171, 276
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	2 cut(s)	171, 276
Bsp143I	GATC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	116
BspACI	CCGC	3 cut(s)	6, 41, 43
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	43
BspHI	TCATGA	2 cut(s)	130, 160
BspLI	GGNNCC	4 cut(s)	10, 122, 187, 241
BspT107I	GGYRCC	2 cut(s)	120, 239
BssECI	CCNNGG	2 cut(s)	41, 116
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	2 cut(s)	41, 116
BstFNI	CGCG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNSI	RCATGY	2 cut(s)	37, 253
BstSLI	GKGCMC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	225
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	2 cut(s)	41, 116
CciI	TCATGA	2 cut(s)	130, 160
Cfr13I	GGNCC	1 cut(s)	186
Cfr42I	CCGCGG	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	5 cut(s)	34, 117, 131, 161, 250
CviJI	RGCY	7 cut(s)	11, 18, 153, 178, 208, 274, 287
CviKI_1	RGCY	7 cut(s)	11, 18, 153, 178, 208, 274, 287
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	274
Eco130I	CCWWGG	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	285
EcoICRI	GAGCTC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	116
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	116
FaeI	CATG	5 cut(s)	37, 120, 134, 164, 253
FaiI	YATR	6 cut(s)	35, 106, 118, 132, 162, 251
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	5 cut(s)	33, 116, 130, 160, 249
FriOI	GRGCYC	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	5 cut(s)	37, 120, 134, 164, 253
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	131, 161
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	71, 169
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	5 cut(s)	37, 120, 134, 164, 253
KpnI	GGTACC	1 cut(s)	243
KspI	CCGCGG	1 cut(s)	44
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	1 cut(s)	8
LpnPI	CCDG	2 cut(s)	112, 188
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	3 cut(s)	49, 52, 278
MhlI	GDGCHC	2 cut(s)	171, 276
MnlI	CCTC	1 cut(s)	277
MslI	CAYNNNNRTG	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	1 cut(s)	99
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	116
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	5 cut(s)	37, 120, 134, 164, 253
NlaIV	GGNNCC	4 cut(s)	10, 122, 187, 241
NspI	RCATGY	2 cut(s)	37, 253
OliI	CACNNNNGTG	1 cut(s)	99
PagI	TCATGA	2 cut(s)	130, 160
Psp124BI	GAGCTC	1 cut(s)	276
PspN4I	GGNNCC	4 cut(s)	10, 122, 187, 241
PspPI	GGNCC	1 cut(s)	186
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
RseI	CAYNNNNRTG	1 cut(s)	99
SacI	GAGCTC	1 cut(s)	276
SacII	CCGCGG	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	186
SduI	GDGCHC	2 cut(s)	171, 276
SetI	ASST	5 cut(s)	20, 155, 180, 245, 276
Sfr303I	CCGCGG	1 cut(s)	44
SgrBI	CCGCGG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	99
SsiI	CCGC	3 cut(s)	6, 41, 43
SstI	GAGCTC	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	116
TaqI	TCGA	1 cut(s)	50
TspDTI	ATGAA	1 cut(s)	119
VneI	GTGCAC	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	186
XceI	RCATGY	2 cut(s)	37, 253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.