Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

19477079 .. 19478856

Gene Structure 1778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18067

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGGATTCATGAGAATAGTTGCTTCTGATGAAGTACTGGGAACGTTTATCTCTATTATAGTGTACTGGCTGTACCCAGCCCTCATTGTATCTATGGAAAAATCATTTCCGAAATACAAAATTCAAAGCGTAGAGGAGCAAGATAAGAGAAACCACCTTGTTTCCAAAGGGACAGCCATCAAAGGCGTCGTCCTCCAACAAGTCCTGCAGCCTCTCATAATTGCCACACTCTTGTATATTCTAACAAACCGTGACGGTGATGCGACTGCTTCTGTGACTACTTATACTACAGGTCAAAATGACGACGGTGATGATGGAATTGGGTCAATGATCATGATGCTGGCCACAACTATGGTCCAGTTTCTGATAGCCATGGTGGTGTTGGATACGTGGCAGTACTTTGTGCAGGTATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

139

Amino Acids

15.52

Weight (kDa)

4.72

Isoelectric Point (pI)

20.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	397
AclI	AACGTT	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	4 cut(s)	36, 65, 74, 398
AgsI	TTSAA	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	364
AoxI	GGCC	1 cut(s)	342
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspS9I	GGNCC	1 cut(s)	355
AsuHPI	GGTGA	2 cut(s)	269, 320
AvaII	GGWCC	1 cut(s)	355
BalI	TGGCCA	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	2 cut(s)	185, 308
BciVI	GTATCC	1 cut(s)	379
BclI	TGATCA	1 cut(s)	330
BfmI	CTRYAG	2 cut(s)	206, 288
BfuAI	ACCTGC	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	1 cut(s)	209
BlsI	GCNGC	1 cut(s)	210
BmcAI	AGTACT	2 cut(s)	36, 398
Bme18I	GGWCC	1 cut(s)	355
BmgT120I	GGNCC	1 cut(s)	355
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	250, 327
BmuI	ACTGGG	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	372
Bse1I	ACTGG	3 cut(s)	42, 71, 358
BseDI	CCNNGG	1 cut(s)	372
BseNI	ACTGG	3 cut(s)	42, 71, 358
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	1 cut(s)	220
BseYI	CCCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	1 cut(s)	344
Bsp143I	GATC	1 cut(s)	330
Bsp19I	CCATGG	1 cut(s)	372
BspANI	GGCC	1 cut(s)	344
BspHI	TCATGA	2 cut(s)	9, 333
BspMAI	CTGCAG	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	397
BsrI	ACTGG	3 cut(s)	42, 71, 358
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	1 cut(s)	330
BssNI	GRCGYC	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	372
Bst4CI	ACNGT	3 cut(s)	251, 257, 308
BstACI	GRCGYC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	330
BstSFI	CTRYAG	2 cut(s)	206, 288
BstV1I	GCAGC	1 cut(s)	220
BstXI	CCANNNNNNTGG	1 cut(s)	352
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	344
BtgI	CCRYGG	1 cut(s)	372
BveI	ACCTGC	1 cut(s)	397
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	364
CciI	TCATGA	2 cut(s)	9, 333
Cfr13I	GGNCC	1 cut(s)	355
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	4 cut(s)	35, 64, 73, 397
CviAII	CATG	4 cut(s)	10, 334, 373, 417
CviJI	RGCY	6 cut(s)	70, 80, 176, 211, 344, 371
CviKI_1	RGCY	6 cut(s)	70, 80, 176, 211, 344, 371
CviQI	GTAC	4 cut(s)	35, 64, 73, 397
DpnI	GATC	1 cut(s)	332
DpnII	GATC	1 cut(s)	330
EaeI	YGGCCR	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	372
EcoT22I	ATGCAT	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	372
FaeI	CATG	4 cut(s)	13, 337, 376, 420
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	4 cut(s)	9, 333, 372, 416
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	209
Fsp4HI	GCNGC	1 cut(s)	209
GluI	GCNGC	1 cut(s)	209
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	344
HgaI	GACGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	4 cut(s)	13, 337, 376, 420
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	2 cut(s)	269, 320
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	3 cut(s)	28, 111, 366
Hpy188III	TCNNGA	2 cut(s)	10, 334
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	2 cut(s)	191, 308
HpyCH4III	ACNGT	3 cut(s)	251, 257, 308
HpyCH4IV	ACGT	2 cut(s)	44, 389
HpyCH4V	TGCA	3 cut(s)	208, 406, 416
HpySE526I	ACGT	2 cut(s)	44, 389
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	4 cut(s)	13, 337, 376, 420
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	8 cut(s)	23, 52, 90, 218, 276, 326, 371, 392
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	2 cut(s)	250, 327
MaeII	ACGT	2 cut(s)	44, 389
MaeIII	GTNAC	2 cut(s)	251, 274
MalI	GATC	1 cut(s)	332
MboI	GATC	1 cut(s)	330
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	3 cut(s)	120, 219, 318
MluNI	TGGCCA	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	220, 363
MnlI	CCTC	4 cut(s)	92, 127, 203, 222
Mox20I	TGGCCA	1 cut(s)	344
Mph1103I	ATGCAT	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	344
MslI	CAYNNNNRTG	2 cut(s)	350, 377
Msp20I	TGGCCA	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	372
NdeII	GATC	1 cut(s)	330
NlaIII	CATG	4 cut(s)	13, 337, 376, 420
NmuCI	GTSAC	2 cut(s)	251, 274
NsiI	ATGCAT	1 cut(s)	418
PagI	TCATGA	2 cut(s)	9, 333
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	210
Ppu21I	YACGTR	1 cut(s)	390
Psp1406I	AACGTT	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	355
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	364
RsaI	GTAC	4 cut(s)	36, 65, 74, 398
RsaNI	GTAC	4 cut(s)	35, 64, 73, 397
RseI	CAYNNNNRTG	2 cut(s)	350, 377
SatI	GCNGC	1 cut(s)	209
Sau3AI	GATC	1 cut(s)	330
Sau96I	GGNCC	1 cut(s)	355
ScaI	AGTACT	2 cut(s)	36, 398
SetI	ASST	5 cut(s)	47, 159, 295, 392, 411
SfaNI	GCATC	2 cut(s)	250, 327
SfcI	CTRYAG	2 cut(s)	206, 288
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	2 cut(s)	350, 377
Sse9I	AATT	3 cut(s)	120, 219, 318
StyI	CCWWGG	1 cut(s)	372
TaaI	ACNGT	3 cut(s)	251, 257, 308
TaiI	ACGT	2 cut(s)	47, 392
TasI	AATT	3 cut(s)	120, 219, 318
TatI	WGTACW	3 cut(s)	34, 63, 396
TfiI	GAWTC	1 cut(s)	6
TseFI	GTSAC	2 cut(s)	251, 274
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	2 cut(s)	251, 274
TspDTI	ATGAA	1 cut(s)	45
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
ZrmI	AGTACT	2 cut(s)	36, 398
Zsp2I	ATGCAT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.