Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

17480438 .. 17488106

Gene Structure 7669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGAATAGTTGCTTCTGATGAAGTACTAGGAACGTTTATCCCTATTATAGTGTACTGGCTGTATGCAGCCCTCATTGTATCTATGAAAAAATCATTTCCGAAATACAAAATTCAAAGCGCAGAGGAGCAAGACGAGAAACCACCTCGCTTCCAAAGGGACAACCATCAAAGGCCGATAGGTCAAAATGAAGACGGTGATGATGGAATTGGGTCAATGATCATGATCCTTGCCACAACTATGGTCCAGTTTCTGATAGCCATGGTGGTGATGGATACGTGGCAGTACTTCCTCCGTATGCATATGCAGCTAGCATTGTACAACCACCCGTTGGAGGGTCTTCTCTTGGACACTATGGGCGGAGCCGTCAGCTTCTTGCTATCAGGCATGTCTCCGCGGACTTCAATTTTCTTCTTCTCATTTGCAACCATCAAGGCAGTGGACGACCACTCCGGTGTATGCAACTTTCCATGGCACCCGTTTCATGTTCTGTTTAGAAACAACAGCTTGTATCACGATGTGCACCACCAGCTTTCCGGGACCAAGTACAACTTCTCTCAGCCCTTCTTTGTGTCTTGGGATAGGATACTTGGTACCTACCACATGCCATCATCTGCTGAAGACGAGCTCAACAAGGAGGCCAAGAGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

217

Amino Acids

24.96

Weight (kDa)

6.18

Isoelectric Point (pI)

31.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	100 - 199	6.2e-12	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	593
AccB1I	GGYRCC	2 cut(s)	474, 593
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccII	CGCG	1 cut(s)	397
AciI	CCGC	3 cut(s)	360, 395, 397
AclI	AACGTT	1 cut(s)	35
AclWI	GGATC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	639
AdeI	CACNNNGTG	1 cut(s)	520
AfaI	GTAC	6 cut(s)	27, 56, 287, 320, 548, 595
AfiI	CCNNNNNNNGG	3 cut(s)	331, 334, 335
AgsI	TTSAA	2 cut(s)	116, 405
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AleI	CACNNNNGTG	1 cut(s)	453
AluBI	AGCT	5 cut(s)	310, 372, 507, 532, 628
AluI	AGCT	5 cut(s)	310, 372, 507, 532, 628
Alw21I	GWGCWC	2 cut(s)	525, 630
Alw26I	GTCTC	1 cut(s)	396
Alw44I	GTGCAC	1 cut(s)	521
AlwI	GGATC	1 cut(s)	220
AlwNI	CAGNNNCTG	1 cut(s)	253
AoxI	GGCC	2 cut(s)	173, 639
ApaLI	GTGCAC	1 cut(s)	521
ApeKI	GCWGC	2 cut(s)	68, 307
ApoI	RAATTY	1 cut(s)	111
Asp718I	GGTACC	1 cut(s)	593
AspLEI	GCGC	1 cut(s)	122
AspS9I	GGNCC	2 cut(s)	244, 540
AsuC2I	CCSGG	1 cut(s)	538
AsuHPI	GGTGA	2 cut(s)	209, 280
AsuNHI	GCTAGC	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	244, 540
BaeGI	GKGCMC	1 cut(s)	525
BanI	GGYRCC	2 cut(s)	474, 593
BanII	GRGCYC	1 cut(s)	630
BbsI	GAAGAC	3 cut(s)	198, 332, 627
Bbv12I	GWGCWC	2 cut(s)	525, 630
BbvI	GCAGC	2 cut(s)	80, 319
BccI	CCATC	5 cut(s)	174, 197, 265, 437, 616
BceAI	ACGGC	1 cut(s)	350
BciVI	GTATCC	2 cut(s)	268, 579
BclI	TGATCA	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	538
BcoDI	GTCTC	1 cut(s)	396
BfaI	CTAG	2 cut(s)	29, 311
BfuI	GTATCC	2 cut(s)	268, 579
BisI	GCNGC	2 cut(s)	69, 308
BlsI	GCNGC	2 cut(s)	70, 309
BmcAI	AGTACT	2 cut(s)	27, 287
Bme1390I	CCNGG	1 cut(s)	538
Bme18I	GGWCC	2 cut(s)	244, 540
BmgT120I	GGNCC	2 cut(s)	244, 540
BmiI	GGNNCC	4 cut(s)	364, 476, 541, 595
BmrFI	CCNGG	1 cut(s)	538
BmtI	GCTAGC	1 cut(s)	314
BpiI	GAAGAC	3 cut(s)	198, 332, 627
BpuMI	CCSGG	1 cut(s)	538
BsaAI	YACGTR	1 cut(s)	279
BsaBI	GATNNNNATC	1 cut(s)	224
BsaJI	CCNNGG	3 cut(s)	261, 395, 470
BsaWI	WCCGGW	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 334, 335
Bse1I	ACTGG	2 cut(s)	62, 247
Bse8I	GATNNNNATC	1 cut(s)	224
BseDI	CCNNGG	3 cut(s)	261, 395, 470
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	3 cut(s)	331, 334, 335
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	2 cut(s)	62, 247
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	80, 319
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	175, 641
BshNI	GGYRCC	2 cut(s)	474, 593
BsiHKAI	GWGCWC	2 cut(s)	525, 630
BsiSI	CCGG	2 cut(s)	453, 537
BslFI	GGGAC	2 cut(s)	173, 553
BslI	CCNNNNNNNGG	3 cut(s)	331, 334, 335
BsmAI	GTCTC	1 cut(s)	396
BsmFI	GGGAC	2 cut(s)	173, 553
BsnI	GGCC	2 cut(s)	175, 641
Bsp1286I	GDGCHC	2 cut(s)	525, 630
Bsp1407I	TGTACA	1 cut(s)	318
Bsp143I	GATC	2 cut(s)	219, 225
Bsp19I	CCATGG	2 cut(s)	261, 470
BspACI	CCGC	3 cut(s)	360, 395, 397
BspANI	GGCC	2 cut(s)	175, 641
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	397
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	4 cut(s)	364, 476, 541, 595
BspOI	GCTAGC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	220
BspT107I	GGYRCC	2 cut(s)	474, 593
BsrGI	TGTACA	1 cut(s)	318
BsrI	ACTGG	2 cut(s)	62, 247
BssECI	CCNNGG	3 cut(s)	261, 395, 470
BssMI	GATC	2 cut(s)	219, 225
BssT1I	CCWWGG	2 cut(s)	261, 470
Bst4CI	ACNGT	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	3 cut(s)	261, 395, 470
BstFNI	CGCG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	122
BstKTI	GATC	2 cut(s)	222, 228
BstMAI	GTCTC	1 cut(s)	396
BstMBI	GATC	2 cut(s)	219, 225
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 529
BstNSI	RCATGY	2 cut(s)	391, 607
BstSCI	CCNGG	1 cut(s)	536
BstSLI	GKGCMC	1 cut(s)	525
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	80, 319
BstV2I	GAAGAC	3 cut(s)	198, 332, 627
BstXI	CCANNNNNNTGG	1 cut(s)	241
BsuI	GTATCC	2 cut(s)	268, 579
BsuRI	GGCC	2 cut(s)	175, 641
BtgI	CCRYGG	3 cut(s)	261, 395, 470
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	1 cut(s)	444
Cac8I	GCNNGC	1 cut(s)	312
CaiI	CAGNNNCTG	1 cut(s)	253
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	244, 540
Cfr42I	CCGCGG	1 cut(s)	398
Csp6I	GTAC	6 cut(s)	26, 55, 286, 319, 547, 594
CviAII	CATG	6 cut(s)	223, 262, 388, 471, 485, 604
CviQI	GTAC	6 cut(s)	26, 55, 286, 319, 547, 594
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	2 cut(s)	221, 227
DpnII	GATC	2 cut(s)	219, 225
DraIII	CACNNNGTG	1 cut(s)	520
EciI	GGCGGA	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	628
Eco130I	CCWWGG	2 cut(s)	261, 470
Eco24I	GRGCYC	1 cut(s)	630
Eco47I	GGWCC	2 cut(s)	244, 540
Eco53kI	GAGCTC	1 cut(s)	628
Eco57I	CTGAAG	1 cut(s)	639
EcoICRI	GAGCTC	1 cut(s)	628
EcoT14I	CCWWGG	2 cut(s)	261, 470
EcoT22I	ATGCAT	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	630
ErhI	CCWWGG	2 cut(s)	261, 470
FaeI	CATG	6 cut(s)	226, 265, 391, 474, 488, 607
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	2 cut(s)	173, 553
FatI	CATG	6 cut(s)	222, 261, 387, 470, 484, 603
FauNDI	CATATG	1 cut(s)	303
FbaI	TGATCA	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	69, 308
FriOI	GRGCYC	1 cut(s)	630
Fsp4HI	GCNGC	2 cut(s)	69, 308
FspBI	CTAG	2 cut(s)	29, 311
GlaI	GCGC	1 cut(s)	121
GluI	GCNGC	2 cut(s)	69, 308
HaeIII	GGCC	2 cut(s)	175, 641
HapII	CCGG	2 cut(s)	453, 537
HhaI	GCGC	1 cut(s)	122
Hin1II	CATG	6 cut(s)	226, 265, 391, 474, 488, 607
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HpaII	CCGG	2 cut(s)	453, 537
HphI	GGTGA	2 cut(s)	209, 280
Hpy166II	GTNNAC	3 cut(s)	55, 442, 523
Hpy188I	TCNGA	3 cut(s)	19, 102, 255
Hpy188III	TCNNGA	2 cut(s)	223, 515
Hpy8I	GTNNAC	3 cut(s)	55, 442, 523
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	2 cut(s)	35, 278
HpyCH4V	TGCA	6 cut(s)	68, 301, 307, 425, 462, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 529
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	2 cut(s)	35, 278
Hsp92II	CATG	6 cut(s)	226, 265, 391, 474, 488, 607
HspAI	GCGC	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	219
KspI	CCGCGG	1 cut(s)	398
Kzo9I	GATC	2 cut(s)	219, 225
LmnI	GCTCC	2 cut(s)	127, 362
LpnPI	CCDG	6 cut(s)	43, 260, 369, 466, 542, 550
Lsp1109I	GCAGC	2 cut(s)	80, 319
MaeI	CTAG	2 cut(s)	29, 311
MaeII	ACGT	2 cut(s)	35, 278
MalI	GATC	2 cut(s)	221, 227
MboI	GATC	2 cut(s)	219, 225
MboII	GAAGA	5 cut(s)	203, 332, 403, 406, 632
MhlI	GDGCHC	2 cut(s)	525, 630
MluCI	AATT	3 cut(s)	111, 207, 405
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	83, 118, 156, 302, 328, 631
Mph1103I	ATGCAT	1 cut(s)	303
MslI	CAYNNNNRTG	3 cut(s)	239, 266, 453
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	2 cut(s)	453, 537
MspR9I	CCNGG	1 cut(s)	538
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	2 cut(s)	307, 529
NciI	CCSGG	1 cut(s)	538
NcoI	CCATGG	2 cut(s)	261, 470
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	2 cut(s)	219, 225
NheI	GCTAGC	1 cut(s)	310
NlaIII	CATG	6 cut(s)	226, 265, 391, 474, 488, 607
NlaIV	GGNNCC	4 cut(s)	364, 476, 541, 595
NsiI	ATGCAT	1 cut(s)	303
NspI	RCATGY	2 cut(s)	391, 607
OliI	CACNNNNGTG	1 cut(s)	453
PagI	TCATGA	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	331
PfoI	TCCNGGA	1 cut(s)	536
PkrI	GCNGC	2 cut(s)	70, 309
Ppu21I	YACGTR	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	630
Psp1406I	AACGTT	1 cut(s)	35
PspN4I	GGNNCC	4 cut(s)	364, 476, 541, 595
PspPI	GGNCC	2 cut(s)	244, 540
PstNI	CAGNNNCTG	1 cut(s)	253
RsaI	GTAC	6 cut(s)	27, 56, 287, 320, 548, 595
RsaNI	GTAC	6 cut(s)	26, 55, 286, 319, 547, 594
RseI	CAYNNNNRTG	3 cut(s)	239, 266, 453
SacI	GAGCTC	1 cut(s)	630
SacII	CCGCGG	1 cut(s)	398
SatI	GCNGC	2 cut(s)	69, 308
Sau3AI	GATC	2 cut(s)	219, 225
Sau96I	GGNCC	2 cut(s)	244, 540
ScaI	AGTACT	2 cut(s)	27, 287
ScrFI	CCNGG	1 cut(s)	538
SduI	GDGCHC	2 cut(s)	525, 630
Sfr303I	CCGCGG	1 cut(s)	398
SgrBI	CCGCGG	1 cut(s)	398
SinI	GGWCC	2 cut(s)	244, 540
SmiMI	CAYNNNNRTG	3 cut(s)	239, 266, 453
Sse9I	AATT	3 cut(s)	111, 207, 405
SsiI	CCGC	3 cut(s)	360, 395, 397
SspMI	CTAG	2 cut(s)	29, 311
SstI	GAGCTC	1 cut(s)	630
StyD4I	CCNGG	1 cut(s)	536
StyI	CCWWGG	2 cut(s)	261, 470
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	2 cut(s)	38, 281
TasI	AATT	3 cut(s)	111, 207, 405
TatI	WGTACW	5 cut(s)	25, 54, 285, 318, 546
TscAI	CASTG	1 cut(s)	444
TseI	GCWGC	2 cut(s)	68, 307
TspDTI	ATGAA	4 cut(s)	36, 101, 204, 473
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	444
Van91I	CCANNNNNTGG	1 cut(s)	331
VneI	GTGCAC	1 cut(s)	521
VpaK11BI	GGWCC	2 cut(s)	244, 540
XapI	RAATTY	1 cut(s)	111
XceI	RCATGY	2 cut(s)	391, 607
XcmI	CCANNNNNNNNNTGG	2 cut(s)	268, 436
XspI	CTAG	2 cut(s)	29, 311
ZrmI	AGTACT	2 cut(s)	27, 287
Zsp2I	ATGCAT	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.