Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

15926499 .. 15948473

Gene Structure 21975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGATTCATGAGAATAGTTGCTTCTGATGAAGTACTAGGAACGTTTATCCCTATTATAGTGTACTGGCTATACGCAGCCCTCATTGTATTTATGGAAAAATCATTTCCAAAATACAAAATTCGAAGCGCAGAGGAGCAAGACAAGAGAAACCACCTCGTTTCCAAAGGAACAGTCATCAAAGGCGTCGTCCTCCAACAAGTCCTGCAGGCTCTCACTGCCACACTCGTGTATATTATGACAAACCGTGACGATGATGCGGCTGCTTCTATGACTACTTCTACTACAGGTCAAAATGACGACGGTGATGATGGAATTGGGTCAATGATCATGATGCTGGCCACAACTATGGTCCAGTTTCTGATAGCCATGGTGGTGATGGATACGTGGCAGTACTTCGTGCATAGGTATATGCATGAGAACCAAGTTCCTCTACAAGCACATCCACTCCCAGCATCACAGGCTTGTAGCTCCGTATATGCATATGCAGCATTGTACAACCACCCGTTGGAGCTAGCGTCTTCTCGTGGACACTATGGGCGGAGCCGTCAGCTTCTTGCTGTCGGGCATGTCTCCGCGGACTTCGATTTTCTTATTCTCATTTGCAACCATCAAGGCAGTGGACGACCACTCCGGTGTATACAACTTTCCATGGCACCCGTTTCATGTTCTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

225

Amino Acids

24.99

Weight (kDa)

6.43

Isoelectric Point (pI)

38.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	655
AccB7I	CCANNNNNTGG	1 cut(s)	508
AccI	GTMKAC	1 cut(s)	640
AccII	CGCG	1 cut(s)	578
AciI	CCGC	4 cut(s)	260, 541, 576, 578
AclI	AACGTT	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	1 cut(s)	120
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	4 cut(s)	36, 65, 395, 497
AfiI	CCNNNNNNNGG	1 cut(s)	508
AleI	CACNNNNGTG	2 cut(s)	227, 634
AluBI	AGCT	3 cut(s)	471, 514, 553
AluI	AGCT	3 cut(s)	471, 514, 553
Alw26I	GTCTC	1 cut(s)	577
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	1 cut(s)	339
ApeKI	GCWGC	3 cut(s)	77, 263, 488
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	4 cut(s)	159, 174, 191, 206
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	317, 388
AsuII	TTCGAA	1 cut(s)	124
AsuNHI	GCTAGC	1 cut(s)	514
AvaII	GGWCC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	341
BanI	GGYRCC	1 cut(s)	655
BauI	CACGAG	2 cut(s)	227, 525
BbsI	GAAGAC	1 cut(s)	513
BbvI	GCAGC	3 cut(s)	89, 250, 500
BccI	CCATC	3 cut(s)	305, 373, 618
BceAI	ACGGC	1 cut(s)	531
BciVI	GTATCC	1 cut(s)	376
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	38, 515
BfmI	CTRYAG	2 cut(s)	206, 285
BfuI	GTATCC	1 cut(s)	376
BisI	GCNGC	4 cut(s)	78, 261, 264, 489
BlsI	GCNGC	4 cut(s)	79, 262, 265, 490
BmcAI	AGTACT	2 cut(s)	36, 395
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	2 cut(s)	545, 657
BmsI	GCATC	3 cut(s)	247, 324, 464
BmtI	GCTAGC	1 cut(s)	518
BpiI	GAAGAC	1 cut(s)	513
Bpu14I	TTCGAA	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	369, 576, 651
BsaWI	WCCGGW	1 cut(s)	633
BsaXI	ACNNNNNCTCC	6 cut(s)	432, 462, 503, 533, 615, 645
Bsc4I	CCNNNNNNNGG	1 cut(s)	508
Bse1I	ACTGG	2 cut(s)	71, 355
BseDI	CCNNGG	3 cut(s)	369, 576, 651
BseGI	GGATG	1 cut(s)	442
BseLI	CCNNNNNNNGG	1 cut(s)	508
BseNI	ACTGG	2 cut(s)	71, 355
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	3 cut(s)	89, 250, 500
BseYI	CCCAGC	1 cut(s)	451
Bsh1236I	CGCG	1 cut(s)	578
BshFI	GGCC	1 cut(s)	341
BshNI	GGYRCC	1 cut(s)	655
BsiSI	CCGG	1 cut(s)	634
BslI	CCNNNNNNNGG	1 cut(s)	508
BsmAI	GTCTC	1 cut(s)	577
BsnI	GGCC	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	495
Bsp143I	GATC	1 cut(s)	327
Bsp19I	CCATGG	2 cut(s)	369, 651
BspACI	CCGC	4 cut(s)	260, 541, 576, 578
BspANI	GGCC	1 cut(s)	341
BspFNI	CGCG	1 cut(s)	578
BspHI	TCATGA	2 cut(s)	9, 330
BspLI	GGNNCC	2 cut(s)	545, 657
BspMAI	CTGCAG	1 cut(s)	210
BspOI	GCTAGC	1 cut(s)	518
BspT104I	TTCGAA	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	655
BsrGI	TGTACA	1 cut(s)	495
BsrI	ACTGG	2 cut(s)	71, 355
BssECI	CCNNGG	3 cut(s)	369, 576, 651
BssMI	GATC	1 cut(s)	327
BssNAI	GTATAC	1 cut(s)	641
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	2 cut(s)	227, 525
BssT1I	CCWWGG	2 cut(s)	369, 651
Bst1107I	GTATAC	1 cut(s)	641
Bst2BI	CACGAG	2 cut(s)	227, 525
Bst4CI	ACNGT	3 cut(s)	175, 248, 305
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	495
BstBAI	YACGTR	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	210, 339, 516
BstDSI	CCRYGG	3 cut(s)	369, 576, 651
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	578
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	330
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 461, 488
BstNSI	RCATGY	1 cut(s)	572
BstSFI	CTRYAG	2 cut(s)	206, 285
BstUI	CGCG	1 cut(s)	578
BstV1I	GCAGC	3 cut(s)	89, 250, 500
BstV2I	GAAGAC	1 cut(s)	513
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstZ17I	GTATAC	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	341
BtgI	CCRYGG	3 cut(s)	369, 576, 651
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	2 cut(s)	216, 625
BtsIMutI	CAGTG	2 cut(s)	216, 625
Cac8I	GCNNGC	3 cut(s)	210, 339, 516
CaiI	CAGNNNCTG	1 cut(s)	361
CciI	TCATGA	2 cut(s)	9, 330
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	352
Cfr42I	CCGCGG	1 cut(s)	579
CseI	GACGC	2 cut(s)	175, 507
Csp6I	GTAC	4 cut(s)	35, 64, 394, 496
CviAII	CATG	7 cut(s)	10, 331, 370, 416, 569, 652, 666
CviQI	GTAC	4 cut(s)	35, 64, 394, 496
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	556
Eco130I	CCWWGG	2 cut(s)	369, 651
Eco47I	GGWCC	1 cut(s)	352
EcoT14I	CCWWGG	2 cut(s)	369, 651
EcoT22I	ATGCAT	2 cut(s)	417, 484
ErhI	CCWWGG	2 cut(s)	369, 651
FaeI	CATG	7 cut(s)	13, 334, 373, 419, 572, 655, 669
FatI	CATG	7 cut(s)	9, 330, 369, 415, 568, 651, 665
FauNDI	CATATG	1 cut(s)	484
FbaI	TGATCA	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	640
Fnu4HI	GCNGC	4 cut(s)	78, 261, 264, 489
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	4 cut(s)	78, 261, 264, 489
FspBI	CTAG	2 cut(s)	38, 515
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	4 cut(s)	78, 261, 264, 489
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	341
HapII	CCGG	1 cut(s)	634
HgaI	GACGC	2 cut(s)	175, 507
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	7 cut(s)	13, 334, 373, 419, 572, 655, 669
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	634
HphI	GGTGA	2 cut(s)	317, 388
Hpy166II	GTNNAC	4 cut(s)	64, 530, 623, 641
Hpy188I	TCNGA	2 cut(s)	28, 363
Hpy188III	TCNNGA	2 cut(s)	10, 331
Hpy8I	GTNNAC	4 cut(s)	64, 530, 623, 641
Hpy99I	CGWCG	2 cut(s)	191, 305
HpyCH4III	ACNGT	3 cut(s)	175, 248, 305
HpyCH4IV	ACGT	2 cut(s)	44, 386
HpyCH4V	TGCA	6 cut(s)	208, 403, 415, 482, 488, 606
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 461, 488
HpySE526I	ACGT	2 cut(s)	44, 386
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	7 cut(s)	13, 334, 373, 419, 572, 655, 669
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	327
KspI	CCGCGG	1 cut(s)	579
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	4 cut(s)	136, 476, 511, 543
LpnPI	CCDG	9 cut(s)	52, 194, 218, 273, 323, 368, 446, 465, 647
Lsp1109I	GCAGC	3 cut(s)	89, 250, 500
LweI	GCATC	3 cut(s)	247, 324, 464
MaeI	CTAG	2 cut(s)	38, 515
MaeII	ACGT	2 cut(s)	44, 386
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MboII	GAAGA	1 cut(s)	513
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	2 cut(s)	120, 315
MluNI	TGGCCA	1 cut(s)	341
MmeI	TCCRAC	2 cut(s)	220, 489
MnlI	CCTC	5 cut(s)	92, 127, 167, 203, 441
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	2 cut(s)	417, 484
MscI	TGGCCA	1 cut(s)	341
MslI	CAYNNNNRTG	4 cut(s)	227, 347, 374, 634
Msp20I	TGGCCA	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	1 cut(s)	634
MvnI	CGCG	1 cut(s)	578
MwoI	GCNNNNNNNGC	3 cut(s)	218, 461, 488
NcoI	CCATGG	2 cut(s)	369, 651
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	1 cut(s)	327
NheI	GCTAGC	1 cut(s)	514
NlaIII	CATG	7 cut(s)	13, 334, 373, 419, 572, 655, 669
NlaIV	GGNNCC	2 cut(s)	545, 657
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	2 cut(s)	417, 484
NspI	RCATGY	1 cut(s)	572
NspV	TTCGAA	1 cut(s)	124
OliI	CACNNNNGTG	2 cut(s)	227, 634
PagI	TCATGA	2 cut(s)	9, 330
PfeI	GAWTC	1 cut(s)	6
PflMI	CCANNNNNTGG	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	79, 262, 265, 490
Ppu21I	YACGTR	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	545, 657
PspPI	GGNCC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	361
RsaI	GTAC	4 cut(s)	36, 65, 395, 497
RsaNI	GTAC	4 cut(s)	35, 64, 394, 496
RseI	CAYNNNNRTG	4 cut(s)	227, 347, 374, 634
SacII	CCGCGG	1 cut(s)	579
SatI	GCNGC	4 cut(s)	78, 261, 264, 489
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	352
SbfI	CCTGCAGG	1 cut(s)	210
ScaI	AGTACT	2 cut(s)	36, 395
SdaI	CCTGCAGG	1 cut(s)	210
SetI	ASST	8 cut(s)	47, 159, 292, 389, 410, 473, 516, 555
SfaNI	GCATC	3 cut(s)	247, 324, 464
SfcI	CTRYAG	2 cut(s)	206, 285
Sfr303I	CCGCGG	1 cut(s)	579
SfuI	TTCGAA	1 cut(s)	124
SgrBI	CCGCGG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	4 cut(s)	227, 347, 374, 634
Sse8387I	CCTGCAGG	1 cut(s)	210
Sse9I	AATT	2 cut(s)	120, 315
SsiI	CCGC	4 cut(s)	260, 541, 576, 578
SspMI	CTAG	2 cut(s)	38, 515
StyI	CCWWGG	2 cut(s)	369, 651
TaaI	ACNGT	3 cut(s)	175, 248, 305
TaiI	ACGT	2 cut(s)	47, 389
TaqI	TCGA	2 cut(s)	124, 585
TasI	AATT	2 cut(s)	120, 315
TatI	WGTACW	4 cut(s)	34, 63, 393, 495
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	6
TscAI	CASTG	2 cut(s)	223, 625
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	3 cut(s)	77, 263, 488
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	45, 654
TspGWI	ACGGA	1 cut(s)	463
TspRI	CASTG	2 cut(s)	223, 625
Van91I	CCANNNNNTGG	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	1 cut(s)	572
XcmI	CCANNNNNNNNNTGG	2 cut(s)	376, 617
XmiI	GTMKAC	1 cut(s)	640
XspI	CTAG	2 cut(s)	38, 515
ZrmI	AGTACT	2 cut(s)	36, 395
Zsp2I	ATGCAT	2 cut(s)	417, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.