Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Reverse (-)

51219017 .. 51219462

Gene Structure 446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003646

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCATGAGAACAAGTTCCTCTACAAGCACATCCACTCCCAGCATCACAGGCTTGTAGCTCCGTATGCATATGCAGCATTGTACAACCACCGTTTGGAGGGTCTTCTCGTGGACACTATGGGCGGAGCCGTCAGCTTCTTGCTGTCAAGCATATCTCCGCAGACTTCGATTTTCTTCCTCTCATTTGCAACCATCGAGGCAGTGGACGACCACTCCGGTCTTTCCGGGACCAAGTACAACTTCTCTCAGCCCTTCTTTGTGTCTTGGGATAGGATACTTGGTACCTACCACATGCCATCATCTACTGAAGACGAGCTCAACAAGGAGGCCAAGAGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

114

Amino Acids

12.82

Weight (kDa)

6.42

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FA_hydroxylase	PF04116	1 - 73	6.4e-10	Fatty acid hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	94
AciI	CCGC	2 cut(s)	123, 158
AcuI	CTGAAG	1 cut(s)	327
AfaI	GTAC	3 cut(s)	83, 236, 283
AfiI	CCNNNNNNNGG	2 cut(s)	94, 97
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	3 cut(s)	59, 135, 316
AluI	AGCT	3 cut(s)	59, 135, 316
Alw21I	GWGCWC	1 cut(s)	318
AoxI	GGCC	1 cut(s)	327
ApeKI	GCWGC	1 cut(s)	74
Asp700I	GAANNNNTTC	1 cut(s)	14
Asp718I	GGTACC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	228
AsuC2I	CCSGG	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	228
BanI	GGYRCC	1 cut(s)	281
BanII	GRGCYC	1 cut(s)	318
BauI	CACGAG	1 cut(s)	107
BbsI	GAAGAC	2 cut(s)	95, 315
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	2 cut(s)	200, 304
BceAI	ACGGC	1 cut(s)	113
BciVI	GTATCC	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	267
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme1390I	CCNGG	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmiI	GGNNCC	3 cut(s)	127, 229, 283
BmrFI	CCNGG	1 cut(s)	226
BmsI	GCATC	1 cut(s)	52
BpiI	GAAGAC	2 cut(s)	95, 315
BpuMI	CCSGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	4 cut(s)	20, 50, 197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 97
BseGI	GGATG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	94, 97
BseMII	CTCAG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	2 cut(s)	216, 225
BslFI	GGGAC	1 cut(s)	241
BslI	CCNNNNNNNGG	2 cut(s)	94, 97
BsmFI	GGGAC	1 cut(s)	241
BsnI	GGCC	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	318
Bsp1407I	TGTACA	1 cut(s)	81
BspACI	CCGC	2 cut(s)	123, 158
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	127, 229, 283
BspT107I	GGYRCC	1 cut(s)	281
BsrGI	TGTACA	1 cut(s)	81
BssSI	CACGAG	1 cut(s)	107
Bst2BI	CACGAG	1 cut(s)	107
Bst4CI	ACNGT	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 65, 74
BstNSI	RCATGY	1 cut(s)	295
BstSCI	CCNGG	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	86
BstV2I	GAAGAC	2 cut(s)	95, 315
BsuI	GTATCC	1 cut(s)	267
BsuRI	GGCC	1 cut(s)	329
BtsCI	GGATG	1 cut(s)	30
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	228
Csp6I	GTAC	3 cut(s)	82, 235, 282
CviAII	CATG	2 cut(s)	5, 292
CviJI	RGCY	7 cut(s)	52, 59, 128, 135, 250, 316, 329
CviKI_1	RGCY	7 cut(s)	52, 59, 128, 135, 250, 316, 329
CviQI	GTAC	3 cut(s)	82, 235, 282
DdeI	CTNAG	1 cut(s)	246
EciI	GGCGGA	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	228
Eco53kI	GAGCTC	1 cut(s)	316
Eco57I	CTGAAG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	316
EcoT22I	ATGCAT	2 cut(s)	6, 70
EcoT38I	GRGCYC	1 cut(s)	318
FaeI	CATG	2 cut(s)	8, 295
FaiI	YATR	7 cut(s)	6, 66, 70, 72, 119, 152, 293
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	241
FatI	CATG	2 cut(s)	4, 291
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	75
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	2 cut(s)	216, 225
Hin1II	CATG	2 cut(s)	8, 295
HpaII	CCGG	2 cut(s)	216, 225
Hpy166II	GTNNAC	2 cut(s)	112, 205
Hpy8I	GTNNAC	2 cut(s)	112, 205
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	4, 68, 74, 188
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 65, 74
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	8, 295
KpnI	GGTACC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	64, 125
LpnPI	CCDG	4 cut(s)	34, 53, 229, 238
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	1 cut(s)	52
MboII	GAAGA	3 cut(s)	95, 166, 320
MhlI	GDGCHC	1 cut(s)	318
MnlI	CCTC	5 cut(s)	29, 91, 188, 190, 319
Mph1103I	ATGCAT	2 cut(s)	6, 70
MroXI	GAANNNNTTC	1 cut(s)	14
MspI	CCGG	2 cut(s)	216, 225
MspR9I	CCNGG	1 cut(s)	226
MwoI	GCNNNNNNNGC	3 cut(s)	49, 65, 74
NciI	CCSGG	1 cut(s)	226
NdeI	CATATG	1 cut(s)	70
NlaIII	CATG	2 cut(s)	8, 295
NlaIV	GGNNCC	3 cut(s)	127, 229, 283
NsiI	ATGCAT	2 cut(s)	6, 70
NspI	RCATGY	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	14
PflMI	CCANNNNNTGG	1 cut(s)	94
PfoI	TCCNGGA	1 cut(s)	224
PkrI	GCNGC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	3 cut(s)	127, 229, 283
PspPI	GGNCC	1 cut(s)	228
RsaI	GTAC	3 cut(s)	83, 236, 283
RsaNI	GTAC	3 cut(s)	82, 235, 282
SacI	GAGCTC	1 cut(s)	318
SatI	GCNGC	1 cut(s)	75
Sau96I	GGNCC	1 cut(s)	228
ScrFI	CCNGG	1 cut(s)	226
SduI	GDGCHC	1 cut(s)	318
SetI	ASST	4 cut(s)	61, 137, 287, 318
SfaNI	GCATC	1 cut(s)	52
SinI	GGWCC	1 cut(s)	228
SsiI	CCGC	2 cut(s)	123, 158
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	92
TaqI	TCGA	2 cut(s)	167, 195
TatI	WGTACW	2 cut(s)	81, 234
TscAI	CASTG	1 cut(s)	207
TseI	GCWGC	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	207
Van91I	CCANNNNNTGG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	228
XceI	RCATGY	1 cut(s)	295
XcmI	CCANNNNNNNNNTGG	1 cut(s)	199
XmnI	GAANNNNTTC	1 cut(s)	14
Zsp2I	ATGCAT	2 cut(s)	6, 70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.