Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029269.1

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

400 .. 2564

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgggattcatgagaatagttgcttctgatgaagtactgggaacgtttatctctattatagtgtactggctgtacccagccctcattgtatctatggaaaaatcatttccgaaatacaaaattcaaagcgtagaggagcaagataagagaaaccaccttgtttccaaagggacagccatcaaaggcgtcgtcctccaacaagtcctgcagcctctcataattgccacactcttgtatattctaacaaaccgtgacggtgatgcgactgcttctgtgactacttatactacaggtcaaaatgacgacggtgatgatggaattgggtcaatgatcatgatgctggccacaactatggtccagtttctgatagccatggtggtgttggatacgtggcagtactttgtgcagctagcattgtacaaccacccgtttgagcgtattctcgtggacactatgggcggagccgtcagcttcttgctgtcgggcatgtctccgcggacttcgattttcttcttctcatttgcaaccatcaaggcattggacgaccactccggtgtatgtaactttccatggcacccgtttcatgatctgttcagaaacaacagcttgtatcatgatgtgcaccaccagctttcggggaccaagttcaacttctctcagcccttctttgtgttttgggataggatacttggtacctaccacatgccatcatctgctgaagacgagctcaacaaggaggccaagaataaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

250

Amino Acids

28.36

Weight (kDa)

5.8

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	692
AccB1I	GGYRCC	2 cut(s)	573, 692
AccII	CGCG	1 cut(s)	496
AciI	CCGC	3 cut(s)	459, 494, 496
AclI	AACGTT	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	738
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	6 cut(s)	36, 65, 74, 398, 419, 694
AfiI	CCNNNNNNNGG	1 cut(s)	634
AgsI	TTSAA	2 cut(s)	125, 649
AjuI	GAANNNNNNNTTGG	2 cut(s)	635, 667
AleI	CACNNNNGTG	1 cut(s)	552
AluBI	AGCT	5 cut(s)	409, 471, 606, 631, 727
AluI	AGCT	5 cut(s)	409, 471, 606, 631, 727
Alw21I	GWGCWC	2 cut(s)	624, 729
Alw26I	GTCTC	1 cut(s)	495
Alw44I	GTGCAC	1 cut(s)	620
AlwNI	CAGNNNCTG	1 cut(s)	364
AoxI	GGCC	2 cut(s)	342, 738
ApaLI	GTGCAC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	208, 406
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
Asp718I	GGTACC	1 cut(s)	692
AspS9I	GGNCC	2 cut(s)	355, 639
AsuHPI	GGTGA	2 cut(s)	269, 320
AsuNHI	GCTAGC	1 cut(s)	409
AvaII	GGWCC	2 cut(s)	355, 639
BaeGI	GKGCMC	1 cut(s)	624
BalI	TGGCCA	1 cut(s)	344
BanI	GGYRCC	2 cut(s)	573, 692
BanII	GRGCYC	1 cut(s)	729
BauI	CACGAG	1 cut(s)	443
BbsI	GAAGAC	1 cut(s)	726
Bbv12I	GWGCWC	2 cut(s)	624, 729
BbvI	GCAGC	2 cut(s)	220, 418
BccI	CCATC	4 cut(s)	185, 308, 536, 715
BceAI	ACGGC	1 cut(s)	449
BciVI	GTATCC	2 cut(s)	379, 678
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	1 cut(s)	410
BfmI	CTRYAG	2 cut(s)	206, 288
BfuI	GTATCC	2 cut(s)	379, 678
BisI	GCNGC	2 cut(s)	209, 407
BlsI	GCNGC	2 cut(s)	210, 408
BmcAI	AGTACT	2 cut(s)	36, 398
Bme18I	GGWCC	2 cut(s)	355, 639
BmgT120I	GGNCC	2 cut(s)	355, 639
BmiI	GGNNCC	4 cut(s)	463, 575, 640, 694
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	2 cut(s)	250, 327
BmtI	GCTAGC	1 cut(s)	413
BmuI	ACTGGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	726
BsaAI	YACGTR	1 cut(s)	390
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	3 cut(s)	372, 494, 569
BsaWI	WCCGGW	1 cut(s)	551
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	1 cut(s)	634
Bse1I	ACTGG	3 cut(s)	42, 71, 358
BseDI	CCNNGG	3 cut(s)	372, 494, 569
BseLI	CCNNNNNNNGG	1 cut(s)	634
BseMII	CTCAG	1 cut(s)	671
BseNI	ACTGG	3 cut(s)	42, 71, 358
BseRI	GAGGAG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	624
BseXI	GCAGC	2 cut(s)	220, 418
BseYI	CCCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	496
BshFI	GGCC	2 cut(s)	344, 740
BshNI	GGYRCC	2 cut(s)	573, 692
BsiHKAI	GWGCWC	2 cut(s)	624, 729
BsiSI	CCGG	1 cut(s)	552
BslFI	GGGAC	2 cut(s)	184, 652
BslI	CCNNNNNNNGG	1 cut(s)	634
BsmAI	GTCTC	1 cut(s)	495
BsmFI	GGGAC	2 cut(s)	184, 652
BsnI	GGCC	2 cut(s)	344, 740
Bsp1286I	GDGCHC	2 cut(s)	624, 729
Bsp1407I	TGTACA	1 cut(s)	417
Bsp143I	GATC	2 cut(s)	330, 586
Bsp19I	CCATGG	2 cut(s)	372, 569
BspACI	CCGC	3 cut(s)	459, 494, 496
BspANI	GGCC	2 cut(s)	344, 740
BspCNI	CTCAG	1 cut(s)	670
BspFNI	CGCG	1 cut(s)	496
BspHI	TCATGA	4 cut(s)	9, 333, 583, 613
BspLI	GGNNCC	4 cut(s)	463, 575, 640, 694
BspMAI	CTGCAG	1 cut(s)	210
BspOI	GCTAGC	1 cut(s)	413
BspT107I	GGYRCC	2 cut(s)	573, 692
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	3 cut(s)	42, 71, 358
BssECI	CCNNGG	3 cut(s)	372, 494, 569
BssMI	GATC	2 cut(s)	330, 586
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	443
BssT1I	CCWWGG	2 cut(s)	372, 569
Bst2BI	CACGAG	1 cut(s)	443
Bst4CI	ACNGT	3 cut(s)	251, 257, 308
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	417
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	2 cut(s)	342, 411
BstDEI	CTNAG	1 cut(s)	657
BstDSI	CCRYGG	3 cut(s)	372, 494, 569
BstFNI	CGCG	1 cut(s)	496
BstKTI	GATC	2 cut(s)	333, 589
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	2 cut(s)	330, 586
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNSI	RCATGY	2 cut(s)	490, 706
BstSFI	CTRYAG	2 cut(s)	206, 288
BstSLI	GKGCMC	1 cut(s)	624
BstUI	CGCG	1 cut(s)	496
BstV1I	GCAGC	2 cut(s)	220, 418
BstV2I	GAAGAC	1 cut(s)	726
BstXI	CCANNNNNNTGG	1 cut(s)	352
BsuI	GTATCC	2 cut(s)	379, 678
BsuRI	GGCC	2 cut(s)	344, 740
BtgI	CCRYGG	3 cut(s)	372, 494, 569
Cac8I	GCNNGC	2 cut(s)	342, 411
CaiI	CAGNNNCTG	1 cut(s)	364
CciI	TCATGA	4 cut(s)	9, 333, 583, 613
Cfr13I	GGNCC	2 cut(s)	355, 639
Cfr42I	CCGCGG	1 cut(s)	497
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	6 cut(s)	35, 64, 73, 397, 418, 693
CviAII	CATG	8 cut(s)	10, 334, 373, 487, 570, 584, 614, 703
CviQI	GTAC	6 cut(s)	35, 64, 73, 397, 418, 693
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	2 cut(s)	332, 588
DpnII	GATC	2 cut(s)	330, 586
EaeI	YGGCCR	1 cut(s)	342
EciI	GGCGGA	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	727
Eco130I	CCWWGG	2 cut(s)	372, 569
Eco24I	GRGCYC	1 cut(s)	729
Eco47I	GGWCC	2 cut(s)	355, 639
Eco53kI	GAGCTC	1 cut(s)	727
Eco57I	CTGAAG	1 cut(s)	738
EcoICRI	GAGCTC	1 cut(s)	727
EcoT14I	CCWWGG	2 cut(s)	372, 569
EcoT38I	GRGCYC	1 cut(s)	729
ErhI	CCWWGG	2 cut(s)	372, 569
FaeI	CATG	8 cut(s)	13, 337, 376, 490, 573, 587, 617, 706
FalI	AAGNNNNNCTT	2 cut(s)	635, 667
FaqI	GGGAC	2 cut(s)	184, 652
FatI	CATG	8 cut(s)	9, 333, 372, 486, 569, 583, 613, 702
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	209, 407
FriOI	GRGCYC	1 cut(s)	729
Fsp4HI	GCNGC	2 cut(s)	209, 407
FspBI	CTAG	1 cut(s)	410
GluI	GCNGC	2 cut(s)	209, 407
GsaI	CCCAGC	1 cut(s)	80
HaeIII	GGCC	2 cut(s)	344, 740
HapII	CCGG	1 cut(s)	552
HgaI	GACGC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	8 cut(s)	13, 337, 376, 490, 573, 587, 617, 706
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	552
HphI	GGTGA	2 cut(s)	269, 320
Hpy166II	GTNNAC	3 cut(s)	64, 448, 622
Hpy188I	TCNGA	4 cut(s)	28, 111, 366, 596
Hpy188III	TCNNGA	4 cut(s)	10, 334, 584, 614
Hpy8I	GTNNAC	3 cut(s)	64, 448, 622
Hpy99I	CGWCG	2 cut(s)	191, 308
HpyAV	CCTTC	1 cut(s)	673
HpyCH4III	ACNGT	3 cut(s)	251, 257, 308
HpyCH4IV	ACGT	2 cut(s)	44, 389
HpyCH4V	TGCA	4 cut(s)	208, 406, 524, 622
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	2 cut(s)	44, 389
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	8 cut(s)	13, 337, 376, 490, 573, 587, 617, 706
KpnI	GGTACC	1 cut(s)	696
Ksp22I	TGATCA	1 cut(s)	330
KspI	CCGCGG	1 cut(s)	497
Kzo9I	GATC	2 cut(s)	330, 586
LmnI	GCTCC	2 cut(s)	136, 461
LpnPI	CCDG	9 cut(s)	23, 52, 90, 218, 276, 326, 371, 565, 641
Lsp1109I	GCAGC	2 cut(s)	220, 418
LweI	GCATC	2 cut(s)	250, 327
MaeI	CTAG	1 cut(s)	410
MaeII	ACGT	2 cut(s)	44, 389
MaeIII	GTNAC	3 cut(s)	251, 274, 560
MalI	GATC	2 cut(s)	332, 588
MboI	GATC	2 cut(s)	330, 586
MboII	GAAGA	3 cut(s)	502, 505, 731
MhlI	GDGCHC	2 cut(s)	624, 729
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	3 cut(s)	120, 219, 318
MluNI	TGGCCA	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	220, 363
MnlI	CCTC	5 cut(s)	92, 127, 203, 222, 730
Mox20I	TGGCCA	1 cut(s)	344
MscI	TGGCCA	1 cut(s)	344
MslI	CAYNNNNRTG	3 cut(s)	350, 377, 552
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	1 cut(s)	552
MvnI	CGCG	1 cut(s)	496
MwoI	GCNNNNNNNGC	1 cut(s)	628
NcoI	CCATGG	2 cut(s)	372, 569
NdeII	GATC	2 cut(s)	330, 586
NheI	GCTAGC	1 cut(s)	409
NlaIII	CATG	8 cut(s)	13, 337, 376, 490, 573, 587, 617, 706
NlaIV	GGNNCC	4 cut(s)	463, 575, 640, 694
NmuCI	GTSAC	2 cut(s)	251, 274
NspI	RCATGY	2 cut(s)	490, 706
OliI	CACNNNNGTG	1 cut(s)	552
PagI	TCATGA	4 cut(s)	9, 333, 583, 613
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	2 cut(s)	210, 408
Ppu21I	YACGTR	1 cut(s)	390
Psp124BI	GAGCTC	1 cut(s)	729
Psp1406I	AACGTT	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	76
PspN4I	GGNNCC	4 cut(s)	463, 575, 640, 694
PspPI	GGNCC	2 cut(s)	355, 639
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	364
RsaI	GTAC	6 cut(s)	36, 65, 74, 398, 419, 694
RsaNI	GTAC	6 cut(s)	35, 64, 73, 397, 418, 693
RseI	CAYNNNNRTG	3 cut(s)	350, 377, 552
SacI	GAGCTC	1 cut(s)	729
SacII	CCGCGG	1 cut(s)	497
SatI	GCNGC	2 cut(s)	209, 407
Sau3AI	GATC	2 cut(s)	330, 586
Sau96I	GGNCC	2 cut(s)	355, 639
ScaI	AGTACT	2 cut(s)	36, 398
SduI	GDGCHC	2 cut(s)	624, 729
SfaNI	GCATC	2 cut(s)	250, 327
SfcI	CTRYAG	2 cut(s)	206, 288
Sfr303I	CCGCGG	1 cut(s)	497
SgrBI	CCGCGG	1 cut(s)	497
SinI	GGWCC	2 cut(s)	355, 639
SmiMI	CAYNNNNRTG	3 cut(s)	350, 377, 552
Sse9I	AATT	3 cut(s)	120, 219, 318
SsiI	CCGC	3 cut(s)	459, 494, 496
SspMI	CTAG	1 cut(s)	410
SstI	GAGCTC	1 cut(s)	729
StyI	CCWWGG	2 cut(s)	372, 569
TaaI	ACNGT	3 cut(s)	251, 257, 308
TaiI	ACGT	2 cut(s)	47, 392
TaqI	TCGA	1 cut(s)	503
TasI	AATT	3 cut(s)	120, 219, 318
TatI	WGTACW	4 cut(s)	34, 63, 396, 417
TfiI	GAWTC	1 cut(s)	6
TseFI	GTSAC	2 cut(s)	251, 274
TseI	GCWGC	2 cut(s)	208, 406
Tsp45I	GTSAC	2 cut(s)	251, 274
TspDTI	ATGAA	2 cut(s)	45, 572
VneI	GTGCAC	1 cut(s)	620
VpaK11BI	GGWCC	2 cut(s)	355, 639
XapI	RAATTY	1 cut(s)	120
XceI	RCATGY	2 cut(s)	490, 706
XcmI	CCANNNNNNNNNTGG	2 cut(s)	379, 535
XspI	CTAG	1 cut(s)	410
ZrmI	AGTACT	2 cut(s)	36, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.