Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001109

Physical Location & Seq

Genomic Coordinates Forward (+)

18800633 .. 18831013

Gene Structure 30381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG199600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGATTCATGAGAATAGTTGCTTCTGATGAAGTATTAGGAACGTTTATCCCTATCATAGTGTACTGGCTGTACGCAGCCCTCATTGTATTTATGGAAAAATCATTTCCGAAATACAAAATTCGAAGCGCAGAGGAGCAAGACAAGAGAAACCACCTCGTTTCCAAAGGAACAGTCATCAAAGGCGTCGTCCTCCAACAAGTCCTGCAGGCTCTCACTGCCACACTCGTGTATATTCTGACAAACCGTGACGATGATGCGGCTGCTTCTATGACTACTTCTACTACAGGTCAAAATGATGATGGTGATGATGGAATTGGGTCAATGATCATGATGCTTGCCACAACTATGGTCCAGTTTCTGATAGCCATGGTGGTGATGGACACGTGGCAGTACTTCATGCATAGGTATATGCATGAGAACCAAGTTCCTCTACAAGCACATCCTCTAAAGCCTGGCCAGCATCACAGGCTTGTAGCTCCGTATGCATATGCAGCTAGCATTGTACAACCACCCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00600 ko01100 map00600 map01100

Pfam Domains

Protein Families

FA_hydroxylase

Protein Analysis

173

Amino Acids

19.44

Weight (kDa)

6.27

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001109)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14290 AT1G14290 AT1G69640
fragaria_vesca	FvH4_2g12700 FvH4_2g12700 FvH4_4g31451 FvH4_5g00540
malus_domestica	MD02G1032000.v1.1 MD02G1032600.v1.1 MD10G1041400.v1.1 MD13G1072900.v1.1 MD16G1073700.v1.1
prunus_persica	Prupe.1G273200_v2.0.a1 Prupe.7G242800_v2.0.a1 Prupe.8G045600_v2.0.a1 Prupe.8G045600_v2.0.a1
pyrus_communis	pycom02g02680 pycom05g02770 pycom10g02840 pycom13g06540
rosa_chinensis	RchiOBHm_Chr4g0439941 RchiOBHm_Chr6g0273451 RchiOBHm_Chr7g0201821 RchiOBHm_Chr7g0201841 RchiOBHm_Chr7g0201851 RchiOBHm_Chr7g0211541
rosa_laevigata	RLG00000002928 RLG00000003642 RLG00000003646 RLG00000006223 RLG00000013616
rosa_multiflora	Rmu_co8385993.1_g000001 Rmu_sc0001030.1_g000021 Rmu_sc0001030.1_g000025 Rmu_sc0005891.1_g000027 Rmu_sc0006000.1_g000002 Rmu_sc0010380.1_g000002 Rmu_sc0029269.1_g000001
rosa_roxburghii	Rroxscaffold_5G00380890 Rroxscaffold_7G00195320
rosa_rugosa	Rorug04G0322600 Rorug06G0075300 Rorug06G0075400
rosa_samantha	Rh4AG373600 Rh4BG385900 Rh4CG400400 Rh4DG380200 Rh6AG190100 Rh6BG193600 Rh6CG193100 Rh6DG184700 Rh7AG193600 Rh7BG195200 Rh7CG205000 Rh7DG199600 Rh7DG199700
rosa_wichuraiana	Rw4G031950 Rw6G016550 Rw7G016910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	260
AclI	AACGTT	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	457
AcsI	RAATTY	1 cut(s)	120
AcvI	CACGTG	1 cut(s)	387
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	4 cut(s)	65, 74, 395, 507
AflIII	ACRYGT	1 cut(s)	384
AjnI	CCWGG	1 cut(s)	454
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	2 cut(s)	479, 497
AluI	AGCT	2 cut(s)	479, 497
AlwNI	CAGNNNCTG	1 cut(s)	361
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	77, 263, 494
ApoI	RAATTY	1 cut(s)	120
ArsI	GACNNNNNNTTYG	4 cut(s)	159, 174, 191, 206
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	352
AsuHPI	GGTGA	2 cut(s)	317, 388
AsuII	TTCGAA	1 cut(s)	124
AsuNHI	GCTAGC	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	459
BauI	CACGAG	1 cut(s)	227
BbrPI	CACGTG	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	89, 250, 506
BccI	CCATC	3 cut(s)	296, 305, 373
BciT130I	CCWGG	1 cut(s)	456
BclI	TGATCA	1 cut(s)	327
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	206, 285
BisI	GCNGC	4 cut(s)	78, 261, 264, 495
BlsI	GCNGC	4 cut(s)	79, 262, 265, 496
BmcAI	AGTACT	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	3 cut(s)	247, 324, 472
BmtI	GCTAGC	1 cut(s)	501
Bpu14I	TTCGAA	1 cut(s)	124
BsaAI	YACGTR	1 cut(s)	387
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	71, 355
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	1 cut(s)	442
BseNI	ACTGG	2 cut(s)	71, 355
BseRI	GAGGAG	1 cut(s)	149
BseXI	GCAGC	3 cut(s)	89, 250, 506
BshFI	GGCC	1 cut(s)	459
BsnI	GGCC	1 cut(s)	459
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	327
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	459
BspHI	TCATGA	2 cut(s)	9, 330
BspMAI	CTGCAG	1 cut(s)	210
BspOI	GCTAGC	1 cut(s)	501
BspT104I	TTCGAA	1 cut(s)	124
BsrGI	TGTACA	1 cut(s)	505
BsrI	ACTGG	2 cut(s)	71, 355
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	1 cut(s)	327
BssNI	GRCGYC	1 cut(s)	186
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	175, 248
BstACI	GRCGYC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	505
BstBAI	YACGTR	1 cut(s)	387
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	4 cut(s)	210, 339, 461, 499
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 460, 469, 485, 494
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	2 cut(s)	206, 285
BstV1I	GCAGC	3 cut(s)	89, 250, 506
BstXI	CCANNNNNNTGG	1 cut(s)	349
BsuRI	GGCC	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	442
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	4 cut(s)	210, 339, 461, 499
CaiI	CAGNNNCTG	1 cut(s)	361
CciI	TCATGA	2 cut(s)	9, 330
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	352
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	4 cut(s)	64, 73, 394, 506
CviAII	CATG	5 cut(s)	10, 331, 370, 400, 416
CviQI	GTAC	4 cut(s)	64, 73, 394, 506
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
EaeI	YGGCCR	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	352
Eco72I	CACGTG	1 cut(s)	387
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	369
EcoT22I	ATGCAT	3 cut(s)	405, 417, 490
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	5 cut(s)	13, 334, 373, 403, 419
FatI	CATG	5 cut(s)	9, 330, 369, 399, 415
FauNDI	CATATG	1 cut(s)	490
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	78, 261, 264, 495
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	4 cut(s)	78, 261, 264, 495
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	4 cut(s)	78, 261, 264, 495
HaeIII	GGCC	1 cut(s)	459
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	5 cut(s)	13, 334, 373, 403, 419
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HinfI	GANTC	1 cut(s)	6
HphI	GGTGA	2 cut(s)	317, 388
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	4 cut(s)	28, 111, 240, 363
Hpy188III	TCNNGA	2 cut(s)	10, 331
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	191
HpyCH4III	ACNGT	2 cut(s)	175, 248
HpyCH4IV	ACGT	2 cut(s)	44, 386
HpyCH4V	TGCA	5 cut(s)	208, 403, 415, 488, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 460, 469, 485, 494
HpySE526I	ACGT	2 cut(s)	44, 386
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	5 cut(s)	13, 334, 373, 403, 419
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	136, 484
LpnPI	CCDG	9 cut(s)	52, 194, 218, 273, 368, 441, 454, 468, 473
Lsp1109I	GCAGC	3 cut(s)	89, 250, 506
LweI	GCATC	3 cut(s)	247, 324, 472
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	2 cut(s)	44, 386
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MlsI	TGGCCA	1 cut(s)	459
MluCI	AATT	2 cut(s)	120, 315
MluNI	TGGCCA	1 cut(s)	459
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	92, 127, 167, 203, 441, 456
Mox20I	TGGCCA	1 cut(s)	459
Mph1103I	ATGCAT	3 cut(s)	405, 417, 490
MscI	TGGCCA	1 cut(s)	459
MslI	CAYNNNNRTG	3 cut(s)	227, 347, 374
Msp20I	TGGCCA	1 cut(s)	459
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	5 cut(s)	218, 460, 469, 485, 494
NcoI	CCATGG	1 cut(s)	369
NdeI	CATATG	1 cut(s)	490
NdeII	GATC	1 cut(s)	327
NheI	GCTAGC	1 cut(s)	497
NlaIII	CATG	5 cut(s)	13, 334, 373, 403, 419
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	3 cut(s)	405, 417, 490
NspV	TTCGAA	1 cut(s)	124
OliI	CACNNNNGTG	1 cut(s)	227
PagI	TCATGA	2 cut(s)	9, 330
PfeI	GAWTC	1 cut(s)	6
PkrI	GCNGC	4 cut(s)	79, 262, 265, 496
PmaCI	CACGTG	1 cut(s)	387
PmlI	CACGTG	1 cut(s)	387
Ppu21I	YACGTR	1 cut(s)	387
Psp1406I	AACGTT	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	454
PspCI	CACGTG	1 cut(s)	387
PspGI	CCWGG	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	352
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	361
RsaI	GTAC	4 cut(s)	65, 74, 395, 507
RsaNI	GTAC	4 cut(s)	64, 73, 394, 506
RseI	CAYNNNNRTG	3 cut(s)	227, 347, 374
SatI	GCNGC	4 cut(s)	78, 261, 264, 495
Sau3AI	GATC	1 cut(s)	327
Sau96I	GGNCC	1 cut(s)	352
SbfI	CCTGCAGG	1 cut(s)	210
ScaI	AGTACT	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	456
SdaI	CCTGCAGG	1 cut(s)	210
SetI	ASST	7 cut(s)	47, 159, 292, 389, 410, 481, 499
SfaNI	GCATC	3 cut(s)	247, 324, 472
SfcI	CTRYAG	2 cut(s)	206, 285
SfuI	TTCGAA	1 cut(s)	124
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	3 cut(s)	227, 347, 374
Sse8387I	CCTGCAGG	1 cut(s)	210
Sse9I	AATT	2 cut(s)	120, 315
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	454
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	2 cut(s)	175, 248
TaiI	ACGT	2 cut(s)	47, 389
TaqI	TCGA	1 cut(s)	124
TasI	AATT	2 cut(s)	120, 315
TatI	WGTACW	3 cut(s)	63, 393, 505
TauI	GCSGC	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	6
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	3 cut(s)	77, 263, 494
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	45, 388
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XspI	CTAG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	395
Zsp2I	ATGCAT	3 cut(s)	405, 417, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.