Rh6CG193100

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001109
Physical Location & Seq
Forward (+)
31905819 .. 31908835
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG193100.1

Sequence Viewer

Length: 783 bp
ATGGTGTTTTGGGAAGGGTATGTGAGTGATGAGGCAATGGGGACGTTTGCACCAATTGTGGTTTACTGGTTGTATGCGGGGTTTTACCAGTTGTTGCCGCCGTTGGACAGTTACCGGTTGCACACTCGAAAAGAGGAGGACGAGAAGAACTCGGTGCCCCTTCCCTCTGTTGTAAAGGGTGTTTTGCTTCAACAGCTCGCTCAGGCCACCGTCGCTCAGGGGCTCTTTGTGTTAACCAAAAAGGCCAATACGTCTGGTGTCACAATTCAGCCATCCATTCTTGTCCAGATTGTGCAGATTGTTGTTGCAATGCTAGTCATGGACACATGGCAATACTTTGTGCACCGCTACATGCATCAGAACAAGTTCTTGTACCGCCATGTCCACTCTCAGCACCACAGACTTGTTGTTCCCTACGCAATTGGAGCCCTTTATAACCACCCACTTGAGGGTCTCTTACTTGACACTTTCGGCGGGGCTATCTCTTTTCTAGTGTCGGGAATGACTGCACGGACGGCTGTTATATTCTTCTGCTTTGCTGTGATTAAAACAGTAGATGATCACTGTGGACTTTGGTTGCCTGGTAACATCTTCCACATTTTCTTCCAGAACAATACTGCTTATCATGACATTCATCATCAACTTCAGGGCTTGAAGTATAACTATTCTCAGCCATTCTTCCCGATATGGGATAAAATTTTTGGAACTTACATGCCTTACAGTCTTGTAAAGAGACCTGAAGGGGGTTTTGAAGCAAAGGCAATGAAAGCAATGCAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 map00600 map01100
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

260

Amino Acids

29.78

Weight (kDa)

7.84

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_hydroxylase PF04116 101 - 236 8.1e-27 Fatty acid hydroxylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 154
AciI CCGC 5 cut(s) 77, 98, 346, 376, 474
AcsI RAATTY 1 cut(s) 696
AcuI CTGAAG 2 cut(s) 629, 759
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
AgeI ACCGGT 1 cut(s) 114
AgsI TTSAA 3 cut(s) 191, 655, 752
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 458, 727
Alw44I GTGCAC 1 cut(s) 341
AoxI GGCC 2 cut(s) 204, 243
ApaLI GTGCAC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 696
AsiGI ACCGGT 1 cut(s) 114
Asp700I GAANNNNTTC 1 cut(s) 365
BaeGI GKGCMC 2 cut(s) 159, 345
BanI GGYRCC 1 cut(s) 154
BanII GRGCYC 2 cut(s) 225, 430
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 1 cut(s) 280
BceAI ACGGC 2 cut(s) 85, 531
BciT130I CCWGG 1 cut(s) 582
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 458, 727
BfaI CTAG 3 cut(s) 314, 491, 781
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 582
BmiI GGNNCC 2 cut(s) 156, 427
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 1 cut(s) 364
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bpu10I CCTNAGC 2 cut(s) 201, 216
BpuEI CTTGAG 1 cut(s) 467
BsaI GGTCTC 2 cut(s) 458, 727
BsaWI WCCGGW 1 cut(s) 114
Bsc4I CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
Bse118I RCCGGY 1 cut(s) 114
Bse1I ACTGG 2 cut(s) 71, 88
Bse3DI GCAATG 4 cut(s) 42, 315, 768, 777
BseBI CCWGG 1 cut(s) 582
BseGI GGATG 1 cut(s) 272
BseLI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
BseMI GCAATG 4 cut(s) 42, 315, 768, 777
BseMII CTCAG 4 cut(s) 215, 230, 404, 683
BseNI ACTGG 2 cut(s) 71, 88
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 2 cut(s) 159, 345
BsgI GTGCAG 2 cut(s) 314, 492
BshFI GGCC 2 cut(s) 206, 245
BshNI GGYRCC 1 cut(s) 154
BshTI ACCGGT 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 115
BslFI GGGAC 1 cut(s) 55
BslI CCNNNNNNNGG 4 cut(s) 448, 449, 688, 743
BsmAI GTCTC 2 cut(s) 458, 727
BsmFI GGGAC 1 cut(s) 55
BsnI GGCC 2 cut(s) 206, 245
Bso31I GGTCTC 2 cut(s) 458, 727
Bsp1286I GDGCHC 4 cut(s) 159, 225, 345, 430
Bsp143I GATC 1 cut(s) 559
BspACI CCGC 5 cut(s) 77, 98, 346, 376, 474
BspANI GGCC 2 cut(s) 206, 245
BspCNI CTCAG 4 cut(s) 214, 229, 403, 682
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 156, 427
BspT107I GGYRCC 1 cut(s) 154
BspTNI GGTCTC 2 cut(s) 458, 727
BsrDI GCAATG 4 cut(s) 42, 315, 768, 777
BsrFI RCCGGY 1 cut(s) 114
BsrI ACTGG 2 cut(s) 71, 88
BssAI RCCGGY 1 cut(s) 114
BssMI GATC 1 cut(s) 559
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 5 cut(s) 110, 211, 553, 566, 722
BstC8I GCNNGC 1 cut(s) 198
BstDEI CTNAG 4 cut(s) 201, 216, 390, 669
BstF5I GGATG 1 cut(s) 272
BstKTI GATC 1 cut(s) 562
BstMAI GTCTC 2 cut(s) 458, 727
BstMBI GATC 1 cut(s) 559
BstMWI GCNNNNNNNGC 5 cut(s) 193, 212, 425, 515, 767
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 2 cut(s) 355, 715
BstSCI CCNGG 1 cut(s) 580
BstSLI GKGCMC 2 cut(s) 159, 345
BsuRI GGCC 2 cut(s) 206, 245
BtsCI GGATG 1 cut(s) 272
BtsIMutI CAGTG 1 cut(s) 562
Cac8I GCNNGC 1 cut(s) 198
CciI TCATGA 1 cut(s) 625
Cfr10I RCCGGY 1 cut(s) 114
Csp6I GTAC 1 cut(s) 373
CspAI ACCGGT 1 cut(s) 114
CviAII CATG 6 cut(s) 319, 327, 352, 380, 626, 712
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 4 cut(s) 201, 216, 390, 669
DpnI GATC 1 cut(s) 561
DpnII GATC 1 cut(s) 559
Eco24I GRGCYC 2 cut(s) 225, 430
Eco31I GGTCTC 2 cut(s) 458, 727
Eco57I CTGAAG 2 cut(s) 629, 759
EcoRII CCWGG 1 cut(s) 580
EcoT22I ATGCAT 1 cut(s) 357
EcoT38I GRGCYC 2 cut(s) 225, 430
FaeI CATG 6 cut(s) 322, 330, 355, 383, 629, 715
FaqI GGGAC 1 cut(s) 55
FatI CATG 6 cut(s) 318, 326, 351, 379, 625, 711
FauI CCCGC 2 cut(s) 70, 467
FbaI TGATCA 1 cut(s) 559
Fnu4HI GCNGC 1 cut(s) 98
FokI GGATG 1 cut(s) 259
FriOI GRGCYC 2 cut(s) 225, 430
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 3 cut(s) 314, 491, 781
GluI GCNGC 1 cut(s) 98
HaeIII GGCC 2 cut(s) 206, 245
HapII CCGG 1 cut(s) 115
Hin1II CATG 6 cut(s) 322, 330, 355, 383, 629, 715
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HpaI GTTAAC 1 cut(s) 234
HpaII CCGG 1 cut(s) 115
Hpy166II GTNNAC 5 cut(s) 64, 234, 343, 385, 569
Hpy188I TCNGA 1 cut(s) 360
Hpy188III TCNNGA 5 cut(s) 286, 498, 607, 626, 682
Hpy8I GTNNAC 5 cut(s) 64, 234, 343, 385, 569
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 3 cut(s) 8, 170, 734
HpyCH4III ACNGT 5 cut(s) 110, 211, 553, 566, 722
HpyCH4IV ACGT 2 cut(s) 44, 251
HpyCH4V TGCA 8 cut(s) 50, 121, 295, 308, 343, 355, 509, 775
HpyF10VI GCNNNNNNNGC 5 cut(s) 193, 212, 425, 515, 767
HpyF3I CTNAG 4 cut(s) 201, 216, 390, 669
HpySE526I ACGT 2 cut(s) 44, 251
Hsp92II CATG 6 cut(s) 322, 330, 355, 383, 629, 715
Ksp22I TGATCA 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 559
LmnI GCTCC 1 cut(s) 425
LweI GCATC 1 cut(s) 364
MaeI CTAG 3 cut(s) 314, 491, 781
MaeII ACGT 2 cut(s) 44, 251
MaeIII GTNAC 3 cut(s) 110, 259, 584
MalI GATC 1 cut(s) 561
MboI GATC 1 cut(s) 559
MboII GAAGA 5 cut(s) 157, 520, 583, 595, 670
MfeI CAATTG 2 cut(s) 54, 420
MhlI GDGCHC 4 cut(s) 159, 225, 345, 430
MluCI AATT 4 cut(s) 54, 264, 420, 696
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 5 cut(s) 25, 127, 130, 175, 442
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 365
MseI TTAA 2 cut(s) 233, 546
MspI CCGG 1 cut(s) 115
MspR9I CCNGG 1 cut(s) 582
MunI CAATTG 2 cut(s) 54, 420
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 5 cut(s) 193, 212, 425, 515, 767
NdeII GATC 1 cut(s) 559
NlaIII CATG 6 cut(s) 322, 330, 355, 383, 629, 715
NlaIV GGNNCC 2 cut(s) 156, 427
NmuCI GTSAC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 2 cut(s) 355, 715
PagI TCATGA 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 365
PinAI ACCGGT 1 cut(s) 114
PkrI GCNGC 1 cut(s) 99
PsiI TTATAA 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 156, 427
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 233, 546
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 1 cut(s) 559
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 4 cut(s) 159, 225, 345, 430
SetI ASST 4 cut(s) 47, 198, 254, 739
SfaNI GCATC 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 54, 264, 420, 696
SsiI CCGC 5 cut(s) 77, 98, 346, 376, 474
SspMI CTAG 3 cut(s) 314, 491, 781
StyD4I CCNGG 1 cut(s) 580
TaaI ACNGT 5 cut(s) 110, 211, 553, 566, 722
TaiI ACGT 2 cut(s) 47, 254
TaqI TCGA 1 cut(s) 127
TasI AATT 4 cut(s) 54, 264, 420, 696
TauI GCSGC 1 cut(s) 100
Tru1I TTAA 2 cut(s) 233, 546
Tru9I TTAA 2 cut(s) 233, 546
TscAI CASTG 1 cut(s) 569
TseFI GTSAC 1 cut(s) 259
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 2 cut(s) 623, 779
TspGWI ACGGA 1 cut(s) 526
TspRI CASTG 1 cut(s) 569
VneI GTGCAC 1 cut(s) 341
XapI RAATTY 1 cut(s) 696
XceI RCATGY 2 cut(s) 355, 715
XmnI GAANNNNTTC 1 cut(s) 365
XspI CTAG 3 cut(s) 314, 491, 781
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.