Prupe.7G242800_v2.0.a1

Belongs to the sterol desaturase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001109
Physical Location & Seq
Reverse (-)
20819685 .. 20820476
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G242800.1

Sequence Viewer

Length: 792 bp
ATGGGTATCAACTTTAAAAATTCAGATGAAGTGTTGGGAATTTTTGTCCCAATCTTCATATATTGGATTTATGCAGGCATAGTTGCAGTTATAGAAACTGCATTTCCCAAGTACAAAATGCAAACAACTGAAGAACAAGATGAGAAAAATTTGGTGTCCAGATCGACAGTCATCAAAGGCGTCTTAGTGCAGCAATCCTTGCAGGCCATCAGTGCGGCTCTGCTGTTCTTTCTAACTGGAGGCGCAAATCATCATGATGTCCATGCGGCTGCTCATGCTGCAGCAGGAGGAGGGACTGGAGCCGCTGCATCTGCATGCAGGTATATTATTCAGTTCGCCACTGCCATGGTGGTAATGGACACGTGGCAATACTTCATGCATAGATACATGCATCAGAATAAGTTTTTGTACAAGCATATCCACTCGCATCATCACAGACTAATGGCTCCTTACGCGTTTGGAGCTTTTTACAATCACCCTTTGGAGGGACTTATGGTGGATACGATGAGCGGGGCAATAAGTTTTCTGGTGTCTGGAATGTCTGCACGAGCCTCCATCTTCTTCTTCTCCTTTGCAACGATCAAAGCCGTGGACGATCATTCTGGGTTATGGATCCCTTGGAACCCATTACATGTATTTTTCAGAAACAATAGTGGTTACCATGCTCTTCACCATCAGCTTCATGGAACCAAGTATAACTTCTCTCAGCCCTTCTTTGTGTTTTGGGATATAATACTTGCCACCTACTATATGCCACAAGTTGATCATAAAAACGAGGACAAGCAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 map00600 map01100
Pfam Domains
Protein Families
FA_hydroxylase

Protein Analysis

264

Amino Acids

29.84

Weight (kDa)

7.95

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 309
AccBSI CCGCTC 1 cut(s) 510
AccII CGCG 1 cut(s) 455
AciI CCGC 4 cut(s) 215, 266, 303, 510
AclWI GGATC 2 cut(s) 607, 620
AcsI RAATTY 3 cut(s) 19, 39, 148
AcuI CTGAAG 1 cut(s) 150
AcvI CACGTG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 2 cut(s) 113, 410
AfiI CCNNNNNNNGG 2 cut(s) 484, 485
AflIII ACRYGT 3 cut(s) 360, 453, 631
AjuI GAANNNNNNNTTGG 2 cut(s) 683, 715
AluBI AGCT 2 cut(s) 464, 679
AluI AGCT 2 cut(s) 464, 679
AlwI GGATC 2 cut(s) 607, 620
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 5 cut(s) 190, 269, 278, 281, 305
ApoI RAATTY 3 cut(s) 19, 39, 148
AspLEI GCGC 1 cut(s) 245
AsuHPI GGTGA 2 cut(s) 467, 662
BamHI GGATCC 1 cut(s) 612
BauI CACGAG 1 cut(s) 546
BbrPI CACGTG 1 cut(s) 363
BbvI GCAGC 5 cut(s) 202, 256, 265, 292, 293
BccI CCATC 3 cut(s) 215, 563, 681
BceAI ACGGC 1 cut(s) 572
BciVI GTATCC 1 cut(s) 493
BclI TGATCA 1 cut(s) 763
BfmI CTRYAG 1 cut(s) 279
BfuAI ACCTGC 1 cut(s) 309
BfuI GTATCC 1 cut(s) 493
BisI GCNGC 8 cut(s) 191, 216, 267, 270, 279, 282, 303, 306
BlsI GCNGC 8 cut(s) 192, 217, 268, 271, 280, 283, 304, 307
BmiI GGNNCC 5 cut(s) 301, 447, 614, 623, 688
BmsI GCATC 3 cut(s) 317, 400, 436
BpmI CTGGAG 2 cut(s) 258, 318
BsaAI YACGTR 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 3 cut(s) 345, 588, 617
Bsc4I CCNNNNNNNGG 2 cut(s) 484, 485
Bse1I ACTGG 2 cut(s) 241, 301
BseDI CCNNGG 3 cut(s) 345, 588, 617
BseLI CCNNNNNNNGG 2 cut(s) 484, 485
BseMII CTCAG 1 cut(s) 719
BseNI ACTGG 2 cut(s) 241, 301
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 5 cut(s) 202, 256, 265, 292, 293
BsgI GTGCAG 2 cut(s) 209, 528
Bsh1236I CGCG 1 cut(s) 455
BshFI GGCC 1 cut(s) 206
BslFI GGGAC 3 cut(s) 32, 307, 501
BslI CCNNNNNNNGG 2 cut(s) 484, 485
BsmFI GGGAC 3 cut(s) 32, 307, 501
BsnI GGCC 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 408
Bsp143I GATC 5 cut(s) 161, 579, 595, 612, 763
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 4 cut(s) 215, 266, 303, 510
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 1 cut(s) 718
BspFNI CGCG 1 cut(s) 455
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 5 cut(s) 301, 447, 614, 623, 688
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 1 cut(s) 309
BspPI GGATC 2 cut(s) 607, 620
BspQI GCTCTTC 1 cut(s) 672
BsrBI CCGCTC 1 cut(s) 510
BsrGI TGTACA 1 cut(s) 408
BsrI ACTGG 2 cut(s) 241, 301
BssECI CCNNGG 3 cut(s) 345, 588, 617
BssMI GATC 5 cut(s) 161, 579, 595, 612, 763
BssNI GRCGYC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 546
BssT1I CCWWGG 2 cut(s) 345, 617
Bst2BI CACGAG 1 cut(s) 546
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 1 cut(s) 672
BstACI GRCGYC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 199
BstAUI TGTACA 1 cut(s) 408
BstBAI YACGTR 1 cut(s) 363
BstC8I GCNNGC 3 cut(s) 76, 204, 316
BstDEI CTNAG 2 cut(s) 184, 705
BstDSI CCRYGG 2 cut(s) 345, 588
BstEII GGTNACC 1 cut(s) 656
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 5 cut(s) 164, 582, 598, 615, 766
BstMBI GATC 5 cut(s) 161, 579, 595, 612, 763
BstMWI GCNNNNNNNGC 7 cut(s) 199, 212, 275, 278, 311, 452, 461
BstNSI RCATGY 3 cut(s) 318, 391, 635
BstPI GGTNACC 1 cut(s) 656
BstSFI CTRYAG 1 cut(s) 279
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 5 cut(s) 202, 256, 265, 292, 293
BstX2I RGATCY 1 cut(s) 612
BstXI CCANNNNNNTGG 1 cut(s) 346
BstYI RGATCY 1 cut(s) 612
BsuI GTATCC 1 cut(s) 493
BsuRI GGCC 1 cut(s) 206
BtgI CCRYGG 2 cut(s) 345, 588
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 2 cut(s) 217, 339
BveI ACCTGC 1 cut(s) 309
Cac8I GCNNGC 3 cut(s) 76, 204, 316
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 245
CseI GACGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 112, 409
CviQI GTAC 2 cut(s) 112, 409
DdeI CTNAG 2 cut(s) 184, 705
DpnI GATC 5 cut(s) 163, 581, 597, 614, 765
DpnII GATC 5 cut(s) 161, 579, 595, 612, 763
DraI TTTAAA 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 672
EarI CTCTTC 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 345, 617
Eco57I CTGAAG 1 cut(s) 150
Eco72I CACGTG 1 cut(s) 363
Eco91I GGTNACC 1 cut(s) 656
EcoO65I GGTNACC 1 cut(s) 656
EcoT14I CCWWGG 2 cut(s) 345, 617
EcoT22I ATGCAT 2 cut(s) 381, 393
ErhI CCWWGG 2 cut(s) 345, 617
FalI AAGNNNNNCTT 2 cut(s) 683, 715
FaqI GGGAC 3 cut(s) 32, 307, 501
FauI CCCGC 1 cut(s) 503
FbaI TGATCA 1 cut(s) 763
Fnu4HI GCNGC 8 cut(s) 191, 216, 267, 270, 279, 282, 303, 306
Fsp4HI GCNGC 8 cut(s) 191, 216, 267, 270, 279, 282, 303, 306
GlaI GCGC 1 cut(s) 244
GluI GCNGC 8 cut(s) 191, 216, 267, 270, 279, 282, 303, 306
GsuI CTGGAG 2 cut(s) 258, 318
HaeIII GGCC 1 cut(s) 206
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 180
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HphI GGTGA 2 cut(s) 467, 662
Hpy166II GTNNAC 1 cut(s) 592
Hpy188I TCNGA 3 cut(s) 25, 396, 644
Hpy188III TCNNGA 3 cut(s) 159, 254, 534
Hpy8I GTNNAC 1 cut(s) 592
HpyAV CCTTC 1 cut(s) 721
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 7 cut(s) 199, 212, 275, 278, 311, 452, 461
HpyF3I CTNAG 2 cut(s) 184, 705
HpySE526I ACGT 1 cut(s) 362
Hsp92I GRCGYC 1 cut(s) 180
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 763
Kzo9I GATC 5 cut(s) 161, 579, 595, 612, 763
LguI GCTCTTC 1 cut(s) 672
LmnI GCTCC 3 cut(s) 299, 451, 461
Lsp1109I GCAGC 5 cut(s) 202, 256, 265, 292, 293
LweI GCATC 3 cut(s) 317, 400, 436
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 656
MalI GATC 5 cut(s) 163, 581, 597, 614, 765
MbiI CCGCTC 1 cut(s) 510
MboI GATC 5 cut(s) 161, 579, 595, 612, 763
MboII GAAGA 6 cut(s) 46, 143, 550, 553, 556, 659
MflI RGATCY 1 cut(s) 612
MluCI AATT 3 cut(s) 19, 39, 148
MluI ACGCGT 1 cut(s) 453
MnlI CCTC 6 cut(s) 233, 281, 284, 478, 562, 769
Mph1103I ATGCAT 2 cut(s) 381, 393
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 3 cut(s) 255, 313, 344
MspA1I CMGCKG 1 cut(s) 305
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 7 cut(s) 199, 212, 275, 278, 311, 452, 461
NcoI CCATGG 1 cut(s) 345
NdeII GATC 5 cut(s) 161, 579, 595, 612, 763
NlaIV GGNNCC 5 cut(s) 301, 447, 614, 623, 688
NsiI ATGCAT 2 cut(s) 381, 393
NspI RCATGY 3 cut(s) 318, 391, 635
PaeI GCATGC 1 cut(s) 318
PagI TCATGA 1 cut(s) 253
PciI ACATGT 1 cut(s) 631
PciSI GCTCTTC 1 cut(s) 672
PkrI GCNGC 8 cut(s) 192, 217, 268, 271, 280, 283, 304, 307
PmaCI CACGTG 1 cut(s) 363
PmlI CACGTG 1 cut(s) 363
Ppu21I YACGTR 1 cut(s) 363
PscI ACATGT 1 cut(s) 631
PspCI CACGTG 1 cut(s) 363
PspEI GGTNACC 1 cut(s) 656
PspN4I GGNNCC 5 cut(s) 301, 447, 614, 623, 688
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 612
RsaI GTAC 2 cut(s) 113, 410
RsaNI GTAC 2 cut(s) 112, 409
RseI CAYNNNNRTG 3 cut(s) 255, 313, 344
SapI GCTCTTC 1 cut(s) 672
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 8 cut(s) 191, 216, 267, 270, 279, 282, 303, 306
Sau3AI GATC 5 cut(s) 161, 579, 595, 612, 763
SetI ASST 5 cut(s) 323, 365, 466, 681, 746
SfaNI GCATC 3 cut(s) 317, 400, 436
SfcI CTRYAG 1 cut(s) 279
SmiMI CAYNNNNRTG 3 cut(s) 255, 313, 344
SphI GCATGC 1 cut(s) 318
Sse9I AATT 3 cut(s) 19, 39, 148
SsiI CCGC 4 cut(s) 215, 266, 303, 510
StyI CCWWGG 2 cut(s) 345, 617
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 1 cut(s) 365
TaqI TCGA 1 cut(s) 164
TasI AATT 3 cut(s) 19, 39, 148
TatI WGTACW 2 cut(s) 111, 408
TauI GCSGC 3 cut(s) 218, 269, 305
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TscAI CASTG 2 cut(s) 217, 346
TseI GCWGC 5 cut(s) 190, 269, 278, 281, 305
TspDTI ATGAA 4 cut(s) 42, 46, 364, 671
TspRI CASTG 2 cut(s) 217, 346
XapI RAATTY 3 cut(s) 19, 39, 148
XceI RCATGY 3 cut(s) 318, 391, 635
XcmI CCANNNNNNNNNTGG 3 cut(s) 346, 352, 680
Zsp2I ATGCAT 2 cut(s) 381, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.