AT1G14600
MYB Family

Myb family transcription factor At1g14600 isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001787
Physical Location & Seq
Reverse (-)
5000986 .. 5003637
2652 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G14600.1

Sequence Viewer

Length: 768 bp
ATGGGTAGGTGTGGAAGAAGCAACGACGGAGTAATTGGTGGAGTAAGACCATACGTACGATCTCCGGTGCCTCGTCTGAGATGGACGCCGGAGCTTCACCGGAGTTTCGTTCACGCCGTTGATTTGCTCGGCGGTCAATATAAAGCAACTCCAAAACTTGTTCTGAAGATAATGGATGTCAAGGGACTAACCATATCACACGTCAAGAGCCATCTCCAGATGTATAGGGGATCCAGAATCACTCTTCTTGGAAAACCAGAAGAGAGTTCTTCACCATCTTCAAGAAGAAGAAGAAGACAAGACAATGAAGAAGATCATCTTCATGACAACTTGTCTGTACACGCAAGGAATGATTGTCTTTTGGGTTTTCACTCTTTTAACTTTAGAGAGCAGACTTCAGCGACTGATAATGATGACGATGACTTTCTTAACATCATGAACATGGAGAGAACGAAGACATTTGCAGGCAATGGCGAGTCCATCAAATTTCAGTCTCATCACTCTCTCGAGGCTGAGAACACGAAGAACATTTGGAAAAACACATGGCGAGAAAACGAACACGAAGAAGAAGAAGAGTTATCGCTGTCTCTGTCGTTGAATCATCCTCATAACCATCAACAAAGATGGAAAAGCAATGCTTCATCATCACTCAGTGAAACAAGCGAAGCAGTCTCATCTTCTTCTGGTCCATTCATCTTCAGAGATTGTTTTGCTTCTTCGAAGATTGATCTTAATCTTAATCTCTCCTTTTCTCTACTCCATAGCTGA

Protein Analysis

255

Amino Acids

29.09

Weight (kDa)

6.95

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 25 - 76 1.2e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 67
AciI CCGC 1 cut(s) 132
AclWI GGATC 2 cut(s) 225, 238
AcsI RAATTY 1 cut(s) 485
AcuI CTGAAG 3 cut(s) 185, 381, 682
AcyI GRCGYC 1 cut(s) 86
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 2 cut(s) 57, 339
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 2 cut(s) 282, 598
AhdI GACNNNNNGTC 1 cut(s) 331
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 2 cut(s) 94, 765
AluI AGCT 2 cut(s) 94, 765
Alw26I GTCTC 3 cut(s) 498, 591, 676
AlwI GGATC 2 cut(s) 225, 238
AlwNI CAGNNNCTG 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 506
ApoI RAATTY 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 686
AsuHPI GGTGA 2 cut(s) 89, 264
AsuII TTCGAA 1 cut(s) 719
AvaI CYCGRG 1 cut(s) 506
AvaII GGWCC 1 cut(s) 686
BamHI GGATCC 1 cut(s) 230
BanI GGYRCC 1 cut(s) 67
BbsI GAAGAC 2 cut(s) 301, 461
BccI CCATC 6 cut(s) 75, 219, 283, 488, 618, 621
BceAI ACGGC 1 cut(s) 101
BcoDI GTCTC 3 cut(s) 498, 591, 676
Bme18I GGWCC 1 cut(s) 686
BmeRI GACNNNNNGTC 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 506
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 1 cut(s) 686
BmiI GGNNCC 2 cut(s) 69, 232
BpiI GAAGAC 2 cut(s) 301, 461
BpmI CTGGAG 1 cut(s) 200
Bpu14I TTCGAA 1 cut(s) 719
BsaAI YACGTR 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 732
BsaHI GRCGYC 1 cut(s) 86
BsaWI WCCGGW 2 cut(s) 64, 99
Bse3DI GCAATG 2 cut(s) 475, 640
Bse8I GATNNNNATC 1 cut(s) 732
BseGI GGATG 2 cut(s) 181, 601
BseJI GATNNNNATC 1 cut(s) 732
BseMI GCAATG 2 cut(s) 475, 640
BseMII CTCAG 3 cut(s) 68, 504, 664
BshNI GGYRCC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 506
BsiSI CCGG 3 cut(s) 65, 89, 100
BsiWI CGTACG 1 cut(s) 55
BslFI GGGAC 1 cut(s) 198
BsmAI GTCTC 3 cut(s) 498, 591, 676
BsmFI GGGAC 1 cut(s) 198
BsoBI CYCGRG 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 719
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 4 cut(s) 59, 230, 313, 727
BspACI CCGC 1 cut(s) 132
BspCNI CTCAG 3 cut(s) 69, 505, 663
BspHI TCATGA 2 cut(s) 322, 435
BspLI GGNNCC 2 cut(s) 69, 232
BspPI GGATC 2 cut(s) 225, 238
BspT104I TTCGAA 1 cut(s) 719
BspT107I GGYRCC 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 475, 640
BsrGI TGTACA 1 cut(s) 337
BssMI GATC 4 cut(s) 59, 230, 313, 727
BssNI GRCGYC 1 cut(s) 86
Bst6I CTCTTC 3 cut(s) 249, 255, 567
BstACI GRCGYC 1 cut(s) 86
BstAUI TGTACA 1 cut(s) 337
BstBAI YACGTR 1 cut(s) 55
BstBI TTCGAA 1 cut(s) 719
BstC8I GCNNGC 1 cut(s) 466
BstDEI CTNAG 3 cut(s) 77, 513, 650
BstF5I GGATG 2 cut(s) 181, 601
BstKTI GATC 4 cut(s) 62, 233, 316, 730
BstMAI GTCTC 3 cut(s) 498, 591, 676
BstMBI GATC 4 cut(s) 59, 230, 313, 727
BstSNI TACGTA 1 cut(s) 55
BstV2I GAAGAC 2 cut(s) 301, 461
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BtrI CACGTC 1 cut(s) 202
BtsCI GGATG 2 cut(s) 181, 601
BtsIMutI CAGTG 1 cut(s) 658
Cac8I GCNNGC 1 cut(s) 466
CaiI CAGNNNCTG 1 cut(s) 404
CciI TCATGA 2 cut(s) 322, 435
Cfr13I GGNCC 1 cut(s) 686
CseI GACGC 1 cut(s) 94
Csp6I GTAC 2 cut(s) 56, 338
CviAII CATG 4 cut(s) 323, 436, 442, 543
CviJI RGCY 4 cut(s) 94, 210, 512, 765
CviKI_1 RGCY 4 cut(s) 94, 210, 512, 765
CviQI GTAC 2 cut(s) 56, 338
DdeI CTNAG 3 cut(s) 77, 513, 650
DpnI GATC 4 cut(s) 61, 232, 315, 729
DpnII GATC 4 cut(s) 59, 230, 313, 727
DraIII CACNNNGTG 1 cut(s) 653
DriI GACNNNNNGTC 1 cut(s) 331
Eam1104I CTCTTC 3 cut(s) 249, 255, 567
Eam1105I GACNNNNNGTC 1 cut(s) 331
EarI CTCTTC 3 cut(s) 249, 255, 567
Eco105I TACGTA 1 cut(s) 55
Eco47I GGWCC 1 cut(s) 686
Eco57I CTGAAG 3 cut(s) 185, 381, 682
Eco88I CYCGRG 1 cut(s) 506
FaeI CATG 4 cut(s) 326, 439, 445, 546
FalI AAGNNNNNCTT 4 cut(s) 303, 335, 622, 654
FaqI GGGAC 1 cut(s) 198
FatI CATG 4 cut(s) 322, 435, 441, 542
FokI GGATG 2 cut(s) 188, 588
GsuI CTGGAG 1 cut(s) 200
HapII CCGG 3 cut(s) 65, 89, 100
HgaI GACGC 1 cut(s) 94
Hin1I GRCGYC 1 cut(s) 86
Hin1II CATG 4 cut(s) 326, 439, 445, 546
HinfI GANTC 3 cut(s) 237, 476, 598
HpaII CCGG 3 cut(s) 65, 89, 100
HphI GGTGA 2 cut(s) 89, 264
Hpy166II GTNNAC 2 cut(s) 112, 340
Hpy188I TCNGA 3 cut(s) 78, 165, 701
Hpy188III TCNNGA 7 cut(s) 205, 217, 234, 282, 323, 436, 506
Hpy8I GTNNAC 2 cut(s) 112, 340
Hpy99I CGWCG 1 cut(s) 29
HpyCH4IV ACGT 2 cut(s) 54, 201
HpyCH4V TGCA 1 cut(s) 464
HpyF3I CTNAG 3 cut(s) 77, 513, 650
HpySE526I ACGT 2 cut(s) 54, 201
Hsp92I GRCGYC 1 cut(s) 86
Hsp92II CATG 4 cut(s) 326, 439, 445, 546
Kzo9I GATC 4 cut(s) 59, 230, 313, 727
LmnI GCTCC 1 cut(s) 91
LpnPI CCDG 8 cut(s) 78, 102, 113, 230, 247, 270, 450, 669
MaeII ACGT 2 cut(s) 54, 201
MalI GATC 4 cut(s) 61, 232, 315, 729
MboI GATC 4 cut(s) 59, 230, 313, 727
MflI RGATCY 1 cut(s) 230
MluCI AATT 2 cut(s) 33, 485
MlyI GAGTC 1 cut(s) 485
MnlI CCTC 3 cut(s) 81, 502, 615
MseI TTAA 4 cut(s) 378, 429, 732, 738
MslI CAYNNNNRTG 2 cut(s) 321, 440
MspI CCGG 3 cut(s) 65, 89, 100
NdeII GATC 4 cut(s) 59, 230, 313, 727
NlaIII CATG 4 cut(s) 326, 439, 445, 546
NlaIV GGNNCC 2 cut(s) 69, 232
NmeAIII GCCGAG 1 cut(s) 108
NspV TTCGAA 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 506
PagI TCATGA 2 cut(s) 322, 435
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 237, 598
Pfl23II CGTACG 1 cut(s) 55
PleI GAGTC 1 cut(s) 484
PpsI GAGTC 1 cut(s) 484
Ppu21I YACGTR 1 cut(s) 55
PspLI CGTACG 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 69, 232
PspPI GGNCC 1 cut(s) 686
PstNI CAGNNNCTG 1 cut(s) 404
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 2 cut(s) 57, 339
RsaNI GTAC 2 cut(s) 56, 338
RseI CAYNNNNRTG 2 cut(s) 321, 440
SaqAI TTAA 4 cut(s) 378, 429, 732, 738
Sau3AI GATC 4 cut(s) 59, 230, 313, 727
Sau96I GGNCC 1 cut(s) 686
SchI GAGTC 1 cut(s) 485
SetI ASST 5 cut(s) 11, 57, 96, 204, 767
Sfr274I CTCGAG 1 cut(s) 506
SfuI TTCGAA 1 cut(s) 719
SinI GGWCC 1 cut(s) 686
SlaI CTCGAG 1 cut(s) 506
SmiMI CAYNNNNRTG 2 cut(s) 321, 440
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SnaBI TACGTA 1 cut(s) 55
Sse9I AATT 2 cut(s) 33, 485
SsiI CCGC 1 cut(s) 132
TaiI ACGT 2 cut(s) 57, 204
TaqI TCGA 2 cut(s) 507, 719
TasI AATT 2 cut(s) 33, 485
TatI WGTACW 1 cut(s) 337
TfiI GAWTC 2 cut(s) 237, 598
Tru1I TTAA 4 cut(s) 378, 429, 732, 738
Tru9I TTAA 4 cut(s) 378, 429, 732, 738
TscAI CASTG 1 cut(s) 658
TspDTI ATGAA 5 cut(s) 311, 321, 452, 630, 682
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 1 cut(s) 658
VpaK11BI GGWCC 1 cut(s) 686
XapI RAATTY 1 cut(s) 485
XhoI CTCGAG 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.