Rorug04G0398300
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001787
Physical Location & Seq
Reverse (-)
56430839 .. 56431345
507 bp
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UTR
Exon/CDS
Intron
Rorug04G0398300.1

Sequence Viewer

Length: 507 bp
ATGGAGGAAGTAGAGGTAGTCATAGTAGGTGCAGGTCCTGCTGGTCTAGCAACCTCTGCATGGCTTAACCGCCTCAATATCTCAAATGTCGTACTCGAAAGAGAAGATTGCTATGCTTCTCTTTGGAAGAATAGGACATACGATCGTTTGAAGCTTCACTTAGCAAAGCAATTCTGTGAACTACCGTATATGCCTTTCCCTAAAAATGCACCCACATATGTTCCTAGGAAAGAGTTTATTCAATACTTGGATACTTATGTGTCCACTTTCAAGATAAACCCTCTTTACCACAGAAGTGTGCAGGCTGCTTTTTATGATGAGGATGTGGAAAAATGGAGTGTCCTTGTCAACAACACAAAACAGGGTGTACAAGAAAGTTACTACGGGAAATCTCTTGTGGTTGCGACCGGAGAAAATAGTGAAGGCTATTTTCCTCAAACGAAAGGATTGGGTAGCTTTAAAGGCGAAATCATTCATTCAAGTGAGTATGGAAATGGCAAGAAGTAA

Protein Analysis

168

Amino Acids

19.12

Weight (kDa)

6.83

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 3 - 36 3.5e-06 FAD binding domain
FMO-like PF00743 5 - 165 7.1e-07 Flavin-binding monooxygenase-like
Pyr_redox_2 PF07992 5 - 152 1.6e-06 Pyridine nucleotide-disulphide oxidoreductase
Pyr_redox_3 PF13738 7 - 151 4.3e-10 Pyridine nucleotide-disulphide oxidoreductase
Lys_Orn_oxgnase PF13434 68 - 165 3.3e-06 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AciI CCGC 1 cut(s) 70
AfaI GTAC 2 cut(s) 93, 369
AfiI CCNNNNNNNGG 1 cut(s) 60
AgsI TTSAA 4 cut(s) 151, 242, 271, 480
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 2 cut(s) 154, 456
AluI AGCT 2 cut(s) 154, 456
AlwNI CAGNNNCTG 1 cut(s) 38
ApeKI GCWGC 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 471
AspA2I CCTAGG 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 35
AvaII GGWCC 1 cut(s) 35
AvrII CCTAGG 1 cut(s) 224
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BbvI GCAGC 1 cut(s) 292
BciVI GTATCC 1 cut(s) 244
BfaI CTAG 2 cut(s) 47, 225
BfuAI ACCTGC 1 cut(s) 23
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 1 cut(s) 306
BlnI CCTAGG 1 cut(s) 224
BlsI GCNGC 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 1 cut(s) 35
BsaJI CCNNGG 1 cut(s) 224
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 328
BseLI CCNNNNNNNGG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 292
BsgI GTGCAG 2 cut(s) 51, 320
Bsh1285I CGRYCG 2 cut(s) 145, 408
BsiEI CGRYCG 2 cut(s) 145, 408
BsiSI CCGG 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 60
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 142
BssT1I CCWWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 186
BstAPI GCANNNNNTGC 2 cut(s) 38, 56
BstAUI TGTACA 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 160
BstF5I GGATG 1 cut(s) 328
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMCI CGRYCG 2 cut(s) 145, 408
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 56, 462
BstV1I GCAGC 1 cut(s) 292
BsuI GTATCC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 328
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 35
Csp6I GTAC 2 cut(s) 92, 368
CviAII CATG 1 cut(s) 60
CviJI RGCY 5 cut(s) 64, 154, 305, 426, 456
CviKI_1 RGCY 5 cut(s) 64, 154, 305, 426, 456
CviQI GTAC 2 cut(s) 92, 368
DdeI CTNAG 1 cut(s) 160
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
DraI TTTAAA 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 35
EcoO109I RGGNCCY 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 63
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 1 cut(s) 59
FauNDI CATATG 1 cut(s) 217
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 2 cut(s) 47, 225
GluI GCNGC 1 cut(s) 306
HapII CCGG 1 cut(s) 408
Hin1II CATG 1 cut(s) 63
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HindIII AAGCTT 1 cut(s) 152
HpaII CCGG 1 cut(s) 408
Hpy166II GTNNAC 4 cut(s) 179, 264, 349, 368
Hpy188III TCNNGA 1 cut(s) 271
Hpy8I GTNNAC 4 cut(s) 179, 264, 349, 368
HpyAV CCTTC 1 cut(s) 416
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 32, 59, 209, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 56, 462
HpyF3I CTNAG 1 cut(s) 160
Hsp92II CATG 1 cut(s) 63
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 6 cut(s) 18, 27, 51, 287, 347, 421
Lsp1109I GCAGC 1 cut(s) 292
MaeI CTAG 2 cut(s) 47, 225
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 2 cut(s) 116, 139
MluCI AATT 1 cut(s) 170
MnlI CCTC 6 cut(s) 7, 64, 83, 291, 313, 444
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 2 cut(s) 66, 459
MslI CAYNNNNRTG 2 cut(s) 294, 480
MspI CCGG 1 cut(s) 408
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 56, 462
NdeI CATATG 1 cut(s) 217
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 63
OliI CACNNNNGTG 1 cut(s) 294
PdmI GAANNNNTTC 1 cut(s) 471
PkrI GCNGC 1 cut(s) 307
Ple19I CGATCG 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 35
PspPI GGNCC 1 cut(s) 35
PspPPI RGGWCCY 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 38
PvuI CGATCG 1 cut(s) 145
RsaI GTAC 2 cut(s) 93, 369
RsaNI GTAC 2 cut(s) 92, 368
RseI CAYNNNNRTG 2 cut(s) 294, 480
SaqAI TTAA 2 cut(s) 66, 459
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 1 cut(s) 35
SetI ASST 6 cut(s) 18, 31, 37, 56, 156, 458
SinI GGWCC 1 cut(s) 35
SmiMI CAYNNNNRTG 2 cut(s) 294, 480
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 70
SspMI CTAG 2 cut(s) 47, 225
StyI CCWWGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 186
TaqI TCGA 1 cut(s) 96
TasI AATT 1 cut(s) 170
TatI WGTACW 1 cut(s) 367
Tru1I TTAA 2 cut(s) 66, 459
Tru9I TTAA 2 cut(s) 66, 459
TseI GCWGC 1 cut(s) 305
TspDTI ATGAA 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 35
XmaJI CCTAGG 1 cut(s) 224
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 2 cut(s) 47, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.