Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001787

Physical Location & Seq

Genomic Coordinates Reverse (-)

1728262 .. 1730888

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG024300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAGAGAGTTGAGATAGTTGATCGTTTGAGTTCTCTTGTGAGCTCTTCGTCCTCTTCACTTGACAATGGAGAAGTATATTCTCCGAACTGCTCGTCATTTGGTGATCATGCTATGAGAATTGCAGCTCAAAGAATGAGAGTTCACTATACTAATTTGCCAGCCCATCAGATAAGCCTGCTGAAATCATCAACTACAGTTAGACCTTATGTTCGTTCGAAAGTGCCTCGGCTTCGTTGGTCACCTGATCTTCACCGCTGTTTTGTGCATGCAGTTGAAAGGCTTGGAGGAGAAGACAGAGCTACTCCAAAGTTGATTTTGGAGATCATGAATGTGAAGGGCCTTACCATATCTCATATAAAAAGCCATCTTCAGATGTACAGGAGCATGAAGCATGAAAAACGCATACAAGAAGCGGCTATAGCAGCAAAGAGGAACGATAAGGCAAAATATCCCTCGGACTCAAACAATTCATACTGGCTAAATTCAAATAAGAGTACTGCTACTCCCCCTACTTATTGCCAAAGGAGCAATTGGATGATGAGAAACATGTACAATAGTGCGCCCTACCAAAGCAATAGAAGCTACATTGATGGAATTGATCACAAGAATACGACCACCCTGGCAAAATGGAACAATGAGAATTACAGACAGAATTCTTACTTCATATTCACTGATCTAGTCAAAAGAGGCAGTGATGATGCTCAAGTACTACGACTATCTCTCTTGTCTATATCTATGACTTGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

250

Amino Acids

28.81

Weight (kDa)

9.81

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	77 - 128	9.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14600 AT2G02060 AT2G02060 AT2G02060 AT4G04555 AT4G04580 AT4G04605
fragaria_vesca	FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g01830 FvH4_3g16530
malus_domestica	MD10G1323600.v1.1
prunus_persica	Prupe.4G018700_v2.0.a1
pyrus_communis	pycom10g27390
rosa_chinensis	RchiOBHm_Chr5g0002671 RchiOBHm_Chr5g0027581
rosa_laevigata	RLG00000008425 RLG00000031051 RLG00000033029 RLG00000033030
rosa_multiflora	Rmu_co8356799.1_g000001 Rmu_sc0001647.1_g000007 Rmu_sc0001969.1_g000009 Rmu_sc0011056.1_g000003
rosa_roxburghii	Rroxscaffold_1G00051950 Rroxscaffold_1G00073200 Rroxscaffold_5G00355280
rosa_rugosa	Rorug04G0398200 Rorug04G0398300
rosa_samantha	Rh2CG329100 Rh2DG367900 Rh4BG160200 Rh4DG156300 Rh5AG021600 Rh5AG194200 Rh5BG024300 Rh5BG192300 Rh5CG023800 Rh5CG212300 Rh5DG022700 Rh5DG022800 Rh5DG194000
rosa_wichuraiana	Rw0G014380 Rw4G013410 Rw5G002010 Rw5G017700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	256, 416
AcsI	RAATTY	2 cut(s)	484, 655
AcuI	CTGAAG	1 cut(s)	356
AfaI	GTAC	4 cut(s)	380, 499, 554, 711
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	2 cut(s)	278, 489
AjnI	CCWGG	1 cut(s)	621
AluBI	AGCT	4 cut(s)	45, 128, 302, 585
AluI	AGCT	4 cut(s)	45, 128, 302, 585
Alw21I	GWGCWC	1 cut(s)	47
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	2 cut(s)	125, 425
ApoI	RAATTY	2 cut(s)	484, 655
ArsI	GACNNNNNNTTYG	4 cut(s)	80, 112, 195, 227
AspLEI	GCGC	1 cut(s)	565
AspS9I	GGNCC	1 cut(s)	340
AsuHPI	GGTGA	3 cut(s)	116, 234, 245
AsuII	TTCGAA	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	300
Bbv12I	GWGCWC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	137, 437
BccI	CCATC	3 cut(s)	174, 375, 587
BciT130I	CCWGG	1 cut(s)	623
BclI	TGATCA	2 cut(s)	106, 601
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	2 cut(s)	195, 420
BisI	GCNGC	3 cut(s)	126, 417, 426
BlsI	GCNGC	3 cut(s)	127, 418, 427
BmcAI	AGTACT	2 cut(s)	499, 711
Bme1390I	CCNGG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	340
BmrFI	CCNGG	1 cut(s)	623
BmsI	GCATC	1 cut(s)	691
BpiI	GAAGAC	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	690
BsaJI	CCNNGG	3 cut(s)	227, 456, 621
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bse1I	ACTGG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	3 cut(s)	227, 456, 621
BseGI	GGATG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	137, 437
BshFI	GGCC	1 cut(s)	342
BsiHKAI	GWGCWC	1 cut(s)	47
BsnI	GGCC	1 cut(s)	342
Bsp119I	TTCGAA	1 cut(s)	218
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp1407I	TGTACA	2 cut(s)	378, 552
Bsp143I	GATC	6 cut(s)	22, 106, 247, 324, 601, 676
BspACI	CCGC	2 cut(s)	256, 416
BspANI	GGCC	1 cut(s)	342
BspHI	TCATGA	1 cut(s)	327
BspQI	GCTCTTC	1 cut(s)	52
BspT104I	TTCGAA	1 cut(s)	218
BsrGI	TGTACA	2 cut(s)	378, 552
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	3 cut(s)	227, 456, 621
BssMI	GATC	6 cut(s)	22, 106, 247, 324, 601, 676
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	52, 61
BstAUI	TGTACA	2 cut(s)	378, 552
BstBI	TTCGAA	1 cut(s)	218
BstC8I	GCNNGC	3 cut(s)	162, 179, 270
BstEII	GGTNACC	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	543
BstHHI	GCGC	1 cut(s)	565
BstKTI	GATC	6 cut(s)	25, 109, 250, 327, 604, 679
BstMBI	GATC	6 cut(s)	22, 106, 247, 324, 601, 676
BstMWI	GCNNNNNNNGC	4 cut(s)	422, 425, 528, 582
BstNI	CCWGG	1 cut(s)	623
BstNSI	RCATGY	2 cut(s)	272, 553
BstPI	GGTNACC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	621
BstSFI	CTRYAG	2 cut(s)	195, 420
BstV1I	GCAGC	2 cut(s)	137, 437
BstV2I	GAAGAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	1 cut(s)	543
BtsI	GCAGTG	1 cut(s)	700
BtsIMutI	CAGTG	2 cut(s)	672, 700
Cac8I	GCNNGC	3 cut(s)	162, 179, 270
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	565
Cfr13I	GGNCC	1 cut(s)	340
Csp6I	GTAC	4 cut(s)	379, 498, 553, 710
CviAII	CATG	6 cut(s)	110, 269, 328, 388, 395, 550
CviQI	GTAC	4 cut(s)	379, 498, 553, 710
DpnI	GATC	6 cut(s)	24, 108, 249, 326, 603, 678
DpnII	GATC	6 cut(s)	22, 106, 247, 324, 601, 676
Eam1104I	CTCTTC	2 cut(s)	52, 61
EarI	CTCTTC	2 cut(s)	52, 61
Ecl136II	GAGCTC	1 cut(s)	45
Eco24I	GRGCYC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	356
Eco91I	GGTNACC	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	340
EcoO65I	GGTNACC	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	6 cut(s)	113, 272, 331, 391, 398, 553
FatI	CATG	6 cut(s)	109, 268, 327, 387, 394, 549
FbaI	TGATCA	2 cut(s)	106, 601
Fnu4HI	GCNGC	3 cut(s)	126, 417, 426
FokI	GGATG	1 cut(s)	550
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	126, 417, 426
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	1 cut(s)	564
GluI	GCNGC	3 cut(s)	126, 417, 426
HaeIII	GGCC	1 cut(s)	342
HhaI	GCGC	1 cut(s)	565
Hin1II	CATG	6 cut(s)	113, 272, 331, 391, 398, 553
Hin6I	GCGC	1 cut(s)	563
HinP1I	GCGC	1 cut(s)	563
HinfI	GANTC	1 cut(s)	461
HphI	GGTGA	3 cut(s)	116, 234, 245
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	5 cut(s)	87, 171, 375, 460, 752
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	1 cut(s)	331
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	3 cut(s)	125, 268, 272
HpyF10VI	GCNNNNNNNGC	4 cut(s)	422, 425, 528, 582
Hsp92II	CATG	6 cut(s)	113, 272, 331, 391, 398, 553
HspAI	GCGC	1 cut(s)	563
Ksp22I	TGATCA	2 cut(s)	106, 601
Kzo9I	GATC	6 cut(s)	22, 106, 247, 324, 601, 676
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	2 cut(s)	384, 528
LpnPI	CCDG	7 cut(s)	174, 191, 258, 367, 463, 608, 635
Lsp1109I	GCAGC	2 cut(s)	137, 437
LweI	GCATC	1 cut(s)	691
MaeI	CTAG	1 cut(s)	680
MaeIII	GTNAC	1 cut(s)	240
MalI	GATC	6 cut(s)	24, 108, 249, 326, 603, 678
MboI	GATC	6 cut(s)	22, 106, 247, 324, 601, 676
MboII	GAAGA	5 cut(s)	39, 48, 242, 305, 362
MfeI	CAATTG	1 cut(s)	532
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	8 cut(s)	120, 154, 469, 484, 532, 597, 643, 655
MlyI	GAGTC	1 cut(s)	455
MnlI	CCTC	6 cut(s)	64, 237, 281, 426, 466, 683
MslI	CAYNNNNRTG	1 cut(s)	332
MspA1I	CMGCKG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	623
MunI	CAATTG	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	4 cut(s)	422, 425, 528, 582
NdeII	GATC	6 cut(s)	22, 106, 247, 324, 601, 676
NlaIII	CATG	6 cut(s)	113, 272, 331, 391, 398, 553
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	240
NspI	RCATGY	2 cut(s)	272, 553
NspV	TTCGAA	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	272
PagI	TCATGA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	549
PciSI	GCTCTTC	1 cut(s)	52
PkrI	GCNGC	3 cut(s)	127, 418, 427
PleI	GAGTC	1 cut(s)	455
PpsI	GAGTC	1 cut(s)	455
PscI	ACATGT	1 cut(s)	549
Psp124BI	GAGCTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	621
PspEI	GGTNACC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	621
PspPI	GGNCC	1 cut(s)	340
RsaI	GTAC	4 cut(s)	380, 499, 554, 711
RsaNI	GTAC	4 cut(s)	379, 498, 553, 710
RseI	CAYNNNNRTG	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	47
SapI	GCTCTTC	1 cut(s)	52
SatI	GCNGC	3 cut(s)	126, 417, 426
Sau3AI	GATC	6 cut(s)	22, 106, 247, 324, 601, 676
Sau96I	GGNCC	1 cut(s)	340
ScaI	AGTACT	2 cut(s)	499, 711
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	623
SduI	GDGCHC	1 cut(s)	47
SetI	ASST	6 cut(s)	47, 130, 208, 247, 304, 587
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	2 cut(s)	195, 420
SfuI	TTCGAA	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	705
SmoI	CTYRAG	1 cut(s)	705
SphI	GCATGC	1 cut(s)	272
Sse9I	AATT	8 cut(s)	120, 154, 469, 484, 532, 597, 643, 655
SsiI	CCGC	2 cut(s)	256, 416
SspMI	CTAG	1 cut(s)	680
SstI	GAGCTC	1 cut(s)	47
StyD4I	CCNGG	1 cut(s)	621
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	218
TasI	AATT	8 cut(s)	120, 154, 469, 484, 532, 597, 643, 655
TatI	WGTACW	4 cut(s)	378, 497, 552, 709
TauI	GCSGC	1 cut(s)	419
TscAI	CASTG	2 cut(s)	679, 700
TseFI	GTSAC	1 cut(s)	240
TseI	GCWGC	2 cut(s)	125, 425
Tsp45I	GTSAC	1 cut(s)	240
TspDTI	ATGAA	5 cut(s)	344, 404, 411, 462, 655
TspRI	CASTG	2 cut(s)	679, 700
XapI	RAATTY	2 cut(s)	484, 655
XceI	RCATGY	2 cut(s)	272, 553
XspI	CTAG	1 cut(s)	680
ZrmI	AGTACT	2 cut(s)	499, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.